RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17191
(377 letters)
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1
protease, hydrolase; 1.73A {Saccharomyces cerevisiae}
PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A
1gcb_A
Length = 457
Score = 225 bits (574), Expect = 8e-70
Identities = 103/369 (27%), Positives = 175/369 (47%), Gaps = 39/369 (10%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKNC- 84
DK+E+ N++L+ +V +A + +D RLV +L+ +P DGGQ+ M +NL+ +GL+PK+
Sbjct: 110 DKLEKANYFLDQIVSSADQ--DIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKDLY 167
Query: 85 --LVWIRIRIIYNNQPVELLMKLAAESIKNNEAVWFGCENRIIRIRIIYNNQPVELLMKL 142
L + N + ++ AE+++ ++ I+ +R + L+
Sbjct: 168 GDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQREIFRLMSLF 227
Query: 143 AAE--SIKNNEAVWFGCENSRIRIIYNNQPVELLMKLAAESIKNNEAVW------FG--- 191
N + W + + + P+E K A ++ +G
Sbjct: 228 MDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDPRHPYGKLI 287
Query: 192 ----CENRIIRIRIIYNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIH 247
N + +IY N E L KL + ++NN+AV+FG K K G+ D+E+
Sbjct: 288 KIDRLGNVLGGDAVIYLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELW 347
Query: 248 NFKAVFDSDVSLPMSKAERMMYGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNH 307
N+ A+ +LP KA R+ Y ES MT AM+I+ +D+ ++ P ++RVENSWG++
Sbjct: 348 NYPAI---GYNLPQQKASRIRYHESLMTAAMLITGCHVDETSKLPLRYRVENSWGKDSGK 404
Query: 308 KGYILMTSPWFKEYVFEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILP 367
G +MT +F+EY F++VVD +P + +EP +LP
Sbjct: 405 DGLYVMTQKYFEEYCFQIVVDINELPKELAS----------------KFTSGKEEPIVLP 448
Query: 368 AWDPMGTLA 376
WDPMG LA
Sbjct: 449 IWDPMGALA 457
Score = 40.1 bits (93), Expect = 0.001
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 1 MSKAERMMYGESSMTHAMVISAVSIDKIERCNFY 34
KA R+ Y ES MT AM+I+ +D+ +
Sbjct: 358 QQKASRIRYHESLMTAAMLITGCHVDETSKLPLR 391
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 220 bits (562), Expect = 4e-68
Identities = 142/378 (37%), Positives = 187/378 (49%), Gaps = 56/378 (14%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPK--- 82
DK+ERC F+L+ V+TA+R EP DGRLV FL+ +P DGGQWDMLVN++ +G++PK
Sbjct: 105 DKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCF 164
Query: 83 -------NCLVWIRIRIIYNNQPVELLMKLAAESIKNNE--AVWFGCENRIIRIRIIYNN 133
I + L L E A I R+ I
Sbjct: 165 PESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVVCICLG 224
Query: 134 QPVELLMKLAAESIKNNEAVWFG--------------CENSRIRIIYNNQPVELLMKLAA 179
P E K+ G N +I N P
Sbjct: 225 NPPETFT--WEYRDKDKNYEKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKHNKL 282
Query: 180 ESIKNNEAVWFGCENRIIRIRIIYNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKL 239
+++ + G + +YNNQP++ L K+ A SIK+ EAVWFGC+V K F +KL
Sbjct: 283 YTVEYLSNMVGGR-------KTLYNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKL 335
Query: 240 GLNDLEIHNFKAVFDSDVSLPMSKAERMMYGESSMTHAMVISAVSIDK-ETEEPTKWRVE 298
GL+D+ +++ + VF + M+KAER+ +GES MTHAM +AVS + TKWRVE
Sbjct: 336 GLSDMNLYDHELVFGVSLK-NMNKAERLTFGESLMTHAMTFTAVSEKDDQDGAFTKWRVE 394
Query: 299 NSWGEEQNHKGYILMTSPWFKEYVFEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDV 358
NSWGE+ HKGY+ MT WF EYV+EVVVD+K+VP VL V
Sbjct: 395 NSWGEDHGHKGYLCMTDEWF-------------------SEYVYEVVVDRKHVPEEVLAV 435
Query: 359 FNQEPTILPAWDPMGTLA 376
QEP ILPAWDPMG LA
Sbjct: 436 LEQEPIILPAWDPMGALA 453
Score = 39.0 bits (90), Expect = 0.002
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1 MSKAERMMYGESSMTHAMVISAVSIDKIERCNF 33
M+KAER+ +GES MTHAM +AVS + F
Sbjct: 356 MNKAERLTFGESLMTHAMTFTAVSEKDDQDGAF 388
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural
genomics, JO center for structural genomics, JCSG; HET:
MSE; 2.23A {Parabacteroides distasonis}
Length = 383
Score = 141 bits (355), Expect = 1e-38
Identities = 49/321 (15%), Positives = 101/321 (31%), Gaps = 48/321 (14%)
Query: 51 RLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKNC--LVWIRIRIIYNNQP--------VE 100
V GG + + + GL+P+ + + N+ V
Sbjct: 73 AAVRTHGDVSFSQGGSFYDALYGMETFGLVPEEEMRPGMMYADTLSNHTELSALTDAMVA 132
Query: 101 LLMKLAAESIKNNEAVWFGCENRIIRIRIIYNNQPVELLMKLAAESIKNNEAVWFGCENS 160
+ K ++++E + + + IY P E E + G + S
Sbjct: 133 AIAKGKLRKLQSDENNAMLWKKAVAAVHQIYLGVPPEKFTYKGKEYTPKSFFESTGLKAS 192
Query: 161 RIRIIYNNQPVELLMKLAAESIKNNEAVWFGCENRIIRIRIIYNNQPVELLMKLAAESIK 220
+ + + E N G + N P++ M++ +I
Sbjct: 193 DYVSLTSYTHHPFYTQFPLEIQDN---WRHG----------MSYNLPLDEFMEVFDNAIN 239
Query: 221 NNEAVWFGCEVSKRFANKLGL--------------------NDLEIHNFKAVFDSDVSLP 260
+ +G +VS+ + G+ L+ K
Sbjct: 240 TGYTIAWGSDVSESGFTRDGVAVMPDDEKVQELSGSDMAHWLKLKPEEKKLNTKPQPQKW 299
Query: 261 MSKAERMM---YGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPW 317
++AER + E++ H M I ++ D+E + V+NSWG + G + +
Sbjct: 300 CTQAERQLAYDNYETTDDHGMQIYGIAKDQE--GNEYYMVKNSWGTNSKYNGIWYASKAF 357
Query: 318 FKEYVFEVVVDKKYVPASVLD 338
+ +VV K +P ++
Sbjct: 358 VRYKTMNIVVHKDALPKAIKA 378
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 3e-12
Identities = 57/374 (15%), Positives = 117/374 (31%), Gaps = 107/374 (28%)
Query: 44 RGEPVDGRLVSFLMQ-SPNGDGGQWDMLVNLIVNHGLMP---KNCLV------------- 86
R +P +L L++ P N+++ G + K +
Sbjct: 133 RLQPYL-KLRQALLELRPAK---------NVLI-DG-VLGSGKTWVALDVCLSYKVQCKM 180
Query: 87 -----WIRIRIIYNNQPVELLMKLAA--ESIKNNEAVWFGCENRIIRIRIIYNNQPVELL 139
W+ ++ N P +L L I N W + I++ ++ EL
Sbjct: 181 DFKIFWLNLK--NCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNIKLRIHSIQAELR 235
Query: 140 MKLAAESIKN---------NEAVW----FGC-------ENSRIRIIYNNQPVELLMKLAA 179
L ++ +N N W C + + + +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 180 ESIKNNE-----AVWFGCENRIIRIRIIYNNQPVELLMKLAAESIKNNEAVW-----FGC 229
++ +E + C + + ++ N P + + AESI++ A W C
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-P--RRLSIIAESIRDGLATWDNWKHVNC 352
Query: 230 EVSKRFANKLGLNDLEIHNFK------AVFDSDVSLPMSKAERMMYGESSMTHAMVI--- 280
+ + LN LE ++ +VF +P +++ + + MV+
Sbjct: 353 DKLTT-IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVMVVVNK 410
Query: 281 --SAVSIDKETEEPT----------KWRVENSWGEEQNHKGYILMTSPWFKEYVFEVVVD 328
++K+ +E T K ++EN E H+ + Y D
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLEN---EYALHRSIV-------DHYNIPKTFD 460
Query: 329 KKYVPASVLDEYVF 342
+ LD+Y +
Sbjct: 461 SDDLIPPYLDQYFY 474
Score = 36.8 bits (84), Expect = 0.014
Identities = 52/292 (17%), Positives = 92/292 (31%), Gaps = 93/292 (31%)
Query: 87 WIRIRIIYNNQPVE------LLMKLAAESIKNNEAVW-----FGCENRIIRIRIIYNNQ- 134
++ R + P E + + AESI++ A W C+ I N
Sbjct: 310 YLDCRP--QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 135 PVE---LLMKLA--AESIKNNEAV----WFGCENSRIRIIYNNQPVELLMKLAAESIKNN 185
P E + +L+ S + WF S + ++ N +L E K
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN----KLHKYSLVE--KQP 421
Query: 186 EAVWFGCENRIIRIRIIYNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLE 245
+ I I IY +EL +KL NE + + ++
Sbjct: 422 -------KESTISIPSIY----LELKVKL------ENEY-----ALHRSI--------VD 451
Query: 246 IHNFKAVFDSDVSLP--------------MSKAERMMYGESSMTHAMVISAVSID----- 286
+N FDSD +P + E ++ V +D
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--HPERMTL-----FRMVFLDFRFLE 504
Query: 287 -KETEEPTKWR----VENSWGEEQNHKGYILMTSPWFKEYVFEVVVDKKYVP 333
K + T W + N+ + + +K YI P ++ V + ++P
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI---LDFLP 553
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.002
Identities = 43/276 (15%), Positives = 72/276 (26%), Gaps = 116/276 (42%)
Query: 86 VW------------IRIRIIYNNQPVELLMKLAAESIKNNEAVWFGCEN-RIIR---IRI 129
VW I I N PV L + FG E + IR +
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNL-------------TIHFGGEKGKRIRENYSAM 1691
Query: 130 IYNNQP-----VELLMKLAAESIKNNEAVWFGCENSRIRIIYNNQPVELLMKLAA-ESIK 183
I+ E + K E + F E + QP LM+ AA E +K
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHST---SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 184 N----NEAVWF-----GCEN----------------RIIRIR------------------ 200
+ F G E ++ R
Sbjct: 1749 SKGLIPADATFAGHSLG-EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 201 -IIYNNQPVELLMKLAAESIKN------NEAVWFGCEVSKRFAN---------------- 237
+I N P + + E+++ W E+ N
Sbjct: 1808 GMIAIN-PGRVAASFSQEALQYVVERVGKRTGWL-VEI----VNYNVENQQYVAAGDLRA 1861
Query: 238 --KLG--LNDLEIHNFKAVFDSDVSLPMSKAERMMY 269
+ LN +++ + + SL + + E ++
Sbjct: 1862 LDTVTNVLNFIKLQKIDII-ELQKSLSLEEVEGHLF 1896
Score = 29.2 bits (65), Expect = 3.1
Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 67/179 (37%)
Query: 10 GESSMTHAMVISAVSIDK----IERCNFYLNTVVETARRGEPVDGRL-VSFLMQSPNGDG 64
E + + IS ++ ++ + + N +L P ++ +S L+
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHL-----------PAGKQVEIS-LVNGAK--- 375
Query: 65 GQWDMLVNLIVNHGLMPKNCLVWIRIRIIYNNQPVEL------LMKLAAESIKNNEAVWF 118
NL+V+ G P P L L K A S + + F
Sbjct: 376 -------NLVVS-G--P----------------PQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 119 GCENRIIRIRIIYNNQPV-----ELLMKLAAESIKNN-EAVWFGCENSRIRIIYNNQPV 171
R ++ + PV L+ A++ I + I+I PV
Sbjct: 410 --SERKLKFSNRFL--PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-----PV 459
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB;
0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 35.6 bits (83), Expect = 0.015
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 270 GESSMTHAMVISAV---SIDKETEEPTKWRVENSWGEEQNHKGYILM 313
M H ++ V E++ W V+NSWGEE GY+ M
Sbjct: 157 SSEDMDHGVL--VVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 201
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 35.7 bits (83), Expect = 0.019
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 270 GESSMTHAMVISAV---SIDKETEEPTKWRVENSWGEEQNHKGYILM 313
M H ++ V E++ W V+NSWGEE GY+ M
Sbjct: 253 SSEDMDHGVL--VVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 297
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 34.8 bits (81), Expect = 0.024
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 272 SSMTHAMVISAVSIDKETEEPTK-WRVENSWGEEQNHKGYILM 313
+ + H ++ V + E W ++NSWG GY+ M
Sbjct: 163 TDLDHGVL--LVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYM 203
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase,
peptidase_C1A, hydrolase, in form; 1.31A {Crocus
sativus}
Length = 222
Score = 34.1 bits (78), Expect = 0.048
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 272 SSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILM 313
+++ H ++ V W V+NSWG E GYIL+
Sbjct: 158 ATVDHTVL--IVGYGSNGTNADYWIVKNSWGTEWGIDGYILI 197
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 33.6 bits (78), Expect = 0.070
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W ++NSWGE +KGYILM
Sbjct: 178 WIIKNSWGENWGNKGYILM 196
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET: O64;
1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 33.2 bits (77), Expect = 0.093
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V+NSWG +GYI M
Sbjct: 181 WLVKNSWGHNFGEEGYIRM 199
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH
2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP:
d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Length = 208
Score = 33.0 bits (76), Expect = 0.10
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V NSWG KGYI M
Sbjct: 169 WIVRNSWGRYWGEKGYIRM 187
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 32.9 bits (76), Expect = 0.11
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 272 SSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILM 313
+ + H + V + W V+NSWG E KGYI M
Sbjct: 158 TELDHGVA--IVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRM 197
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 32.5 bits (75), Expect = 0.13
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V+NSWG +GY+ +
Sbjct: 178 WIVKNSWGTTWGEEGYMRI 196
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP:
d.3.1.1 PDB: 1gec_E*
Length = 218
Score = 32.1 bits (74), Expect = 0.18
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 295 WRVENSWGEEQNHKGYILM 313
++NSWG KGY+ +
Sbjct: 175 IIIKNSWGPNWGEKGYMRL 193
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD,
L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 32.1 bits (74), Expect = 0.20
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V NSWG+ ++GYI M
Sbjct: 174 WIVRNSWGQNWGNQGYIWM 192
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline
specificity, carboh papain family, hydrolase; HET: NAG
FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Length = 221
Score = 32.1 bits (74), Expect = 0.20
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V+NSWG+ GYI
Sbjct: 177 WIVKNSWGKNWGESGYIRA 195
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 32.2 bits (74), Expect = 0.22
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V+NSWG +GYI +
Sbjct: 184 WTVKNSWGPSWGEQGYIRV 202
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen, hydro; 1.40A {Fasciola
hepatica}
Length = 310
Score = 32.2 bits (74), Expect = 0.25
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V+NSWG +GYI M
Sbjct: 269 WIVKNSWGLSWGERGYIRM 287
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya}
SCOP: d.3.1.1 PDB: 1meg_A*
Length = 216
Score = 31.7 bits (73), Expect = 0.25
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 289 TEEPTK-WRVENSWGEEQNHKGYILM 313
++NSWG KGYI +
Sbjct: 168 KSGGKGYILIKNSWGTAWGEKGYIRI 193
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 32.2 bits (74), Expect = 0.26
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V+NSWG +GYI M
Sbjct: 278 WLVKNSWGHNFGEEGYIRM 296
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein,
hydrola protease, secreted, thiol protease; HET: P6G;
1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A
3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Length = 222
Score = 31.7 bits (73), Expect = 0.30
Identities = 7/19 (36%), Positives = 7/19 (36%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V NSW GY
Sbjct: 186 WIVRNSWDTNWGDNGYGYF 204
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 31.9 bits (73), Expect = 0.30
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W ++NSWG GY
Sbjct: 292 WILKNSWGSGWGESGYWRQ 310
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 31.8 bits (73), Expect = 0.31
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W ++NSWGE +KGYILM
Sbjct: 277 WIIKNSWGENWGNKGYILM 295
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP,
cysteine protease, allergen, protease, thiol protease;
1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B
3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A*
1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A*
5pad_A* 6pad_A* ...
Length = 212
Score = 31.3 bits (72), Expect = 0.32
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 295 WRVENSWGEEQNHKGYILM 313
++NSWG GYI +
Sbjct: 171 ILIKNSWGTGWGENGYIRI 189
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET:
E64; 2.10A {Jacaratia mexicana}
Length = 214
Score = 31.3 bits (72), Expect = 0.32
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 295 WRVENSWGEEQNHKGYILM 313
++NSWG KGYI +
Sbjct: 171 LLLKNSWGPNWGEKGYIRI 189
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase;
HET: E64 SO4; 1.87A {Carica candamarcensis}
Length = 213
Score = 31.3 bits (72), Expect = 0.32
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 295 WRVENSWGEEQNHKGYILM 313
++NSWG GYI +
Sbjct: 171 ILIKNSWGTGWGEGGYIRI 189
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A
{Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 31.4 bits (72), Expect = 0.34
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 289 TEEPTK-WRVENSWGEEQNHKGYILM 313
+E+ W +NSWGE+ GYI +
Sbjct: 177 SEDGVDYWIAKNSWGEDWGIDGYIRI 202
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A
{Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 31.4 bits (72), Expect = 0.40
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 295 WRVENSWGEEQNHKGYILM 313
+ ++NSWG + GYI +
Sbjct: 202 YIIKNSWGSDWGEGGYINL 220
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol
protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi}
PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A*
1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A*
1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A*
...
Length = 215
Score = 31.3 bits (72), Expect = 0.41
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W ++NSW + +GYI +
Sbjct: 178 WIIKNSWTTQWGEEGYIRI 196
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular
interaction, HY hydrolase inhibitor complex; 2.20A
{Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A
3bpf_A* 3pnr_A
Length = 241
Score = 31.0 bits (71), Expect = 0.45
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 295 WRVENSWGEEQNHKGYILM 313
+ ++NSWG++ +G+I +
Sbjct: 200 YIIKNSWGQQWGERGFINI 218
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase,
aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP:
d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Length = 220
Score = 30.9 bits (71), Expect = 0.46
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V+NSWG + GY L+
Sbjct: 182 WIVKNSWGPQWGMNGYFLI 200
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut;
1.85A {Tenebrio molitor}
Length = 331
Score = 31.1 bits (71), Expect = 0.52
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V+NSWG+ GY +
Sbjct: 294 WLVKNSWGDGWGLDGYFKI 312
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 31.1 bits (71), Expect = 0.57
Identities = 7/19 (36%), Positives = 7/19 (36%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V NSW GY
Sbjct: 266 WIVRNSWDTNWGDNGYGYF 284
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 31.1 bits (71), Expect = 0.58
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 295 WRVENSWGEEQNHKGYILM 313
++NSWG KGYI +
Sbjct: 281 ILIKNSWGTAWGEKGYIRI 299
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase;
HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Length = 214
Score = 30.5 bits (70), Expect = 0.63
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W ++NSWG + KGY +
Sbjct: 177 WAIKNSWGTDWGEKGYYYL 195
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A
{Xylella fastidiosa}
Length = 291
Score = 30.6 bits (69), Expect = 0.68
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 295 WRVENSWGEEQNHKGYILMT 314
+R+ NSWG GY M
Sbjct: 251 FRIRNSWGNNVGEDGYFWMP 270
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 29.2 bits (65), Expect = 0.83
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 5/87 (5%)
Query: 207 PVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLPMSKAER 266
L+ L + + E F ++S LN E+ + + A R
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTIIQGTWFLNGEELKS-----NEPEGQVEPGALR 62
Query: 267 MMYGESSMTHAMVISAVSIDKETEEPT 293
+ + H +++ AV
Sbjct: 63 YRIEQKGLQHRLILHAVKHQDSGALVG 89
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
cathepsin, hydrolase, glycoprotein, thiol protease; HET:
DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Length = 265
Score = 29.6 bits (67), Expect = 1.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V NSWG +GY +
Sbjct: 221 WIVRNSWGPYWGDEGYFKV 239
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: d.15.1.1
Length = 100
Score = 28.1 bits (62), Expect = 1.7
Identities = 10/53 (18%), Positives = 26/53 (49%)
Query: 136 VELLMKLAAESIKNNEAVWFGCENSRIRIIYNNQPVELLMKLAAESIKNNEAV 188
+E + + +++ A FG + + I+I+ N + ++L L + + +N
Sbjct: 34 LETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA 86
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 29.2 bits (66), Expect = 2.3
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 355 VLDVFNQEPTILPAWDP 371
+LDVF+QEP LP P
Sbjct: 252 MLDVFSQEP--LPQESP 266
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 28.9 bits (65), Expect = 2.3
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 330 KYVPASVLDEYVFEVVVDKKYVPASVLDVFNQE 362
Y+P +V D + V VD + V + D QE
Sbjct: 37 DYIP-TVFDNFSANVAVDGQIVNLGLWDTAGQE 68
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 29.4 bits (66), Expect = 2.4
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 288 ETEEPTK-WRVENSWGEEQNHKGYILM 313
++ W V+NSWG GY +
Sbjct: 391 DSASGMDYWIVKNSWGTGWGENGYFRI 417
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A
{Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 28.1 bits (63), Expect = 4.2
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 289 TEEPTK-WRVENSWGEEQNHKGYILM 313
+ T+ W V NSWGE +G++ +
Sbjct: 224 ISDGTEYWIVRNSWGEPWGERGWLRI 249
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 28.0 bits (63), Expect = 5.0
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 6/20 (30%)
Query: 355 VLDVFNQEPTILPA----WD 370
VLDVF QEP LPA W
Sbjct: 253 VLDVFEQEP--LPADSPLWG 270
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 27.4 bits (61), Expect = 6.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 331 YVPASVLDEYVFEVVVDKKYVPASVLDVFNQE 362
YVP +V + YV ++ VD K V ++ D QE
Sbjct: 54 YVP-TVFENYVADIEVDGKQVELALWDTAGQE 84
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 27.7 bits (62), Expect = 6.9
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 289 TEEPTK-WRVENSWGEEQNHKGYILM 313
T W++ NSW E GY L+
Sbjct: 269 TSNGVPYWKIANSWNTEWGMDGYFLI 294
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 27.3 bits (61), Expect = 7.3
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 331 YVPASVLDEYVFEVVVDKKYVPASVLDVFNQE 362
YVP +V + + + + + D QE
Sbjct: 52 YVP-TVFENFSHVMKYKNEEFILHLWDTAGQE 82
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 7.4
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 11/30 (36%)
Query: 280 ISAVSIDKETEEP---TKWRVENSWGEEQN 306
I+ D+ T+EP KWR EEQ
Sbjct: 74 IAQA--DRLTQEPESIRKWR------EEQR 95
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 27.3 bits (61), Expect = 8.0
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 289 TEEPTK-WRVENSWGEEQNHKGYILM 313
E T W V NSW + G+ +
Sbjct: 271 VENGTPYWLVANSWNTDWGDNGFFKI 296
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 27.0 bits (60), Expect = 9.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 329 KKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQE 362
+Y+P + D + V VD + V + D Q+
Sbjct: 47 TEYIP-TAFDNFSAVVSVDGRPVRLQLCDTAGQD 79
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.403
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,864,458
Number of extensions: 352054
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 70
Length of query: 377
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 282
Effective length of database: 4,049,298
Effective search space: 1141902036
Effective search space used: 1141902036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)