RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17192
(74 letters)
>gnl|CDD|238328 cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database
nomenclature); composed of eukaryotic bleomycin
hydrolases (BH) and bacterial aminopeptidases C (pepC).
The proteins of this subfamily contain a large insert
relative to the C1A peptidase (papain) subfamily. BH is
a cysteine peptidase that detoxifies bleomycin by
hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. Bleomycin, a glycopeptide derived from the
fungus Streptomyces verticullus, is an effective
anticancer drug due to its ability to induce DNA strand
breaks. Human BH is the major cause of tumor cell
resistance to bleomycin chemotherapy, and is also
genetically linked to Alzheimer's disease. In addition
to its peptidase activity, the yeast BH (Gal6) binds DNA
and acts as a repressor in the Gal4 regulatory system.
BH forms a hexameric ring barrel structure with the
active sites imbedded in the central channel. The
bacterial homolog of BH, called pepC, is a cysteine
aminopeptidase possessing broad specificity. Although
its crystal structure has not been solved, biochemical
analysis shows that pepC also forms a hexamer. .
Length = 437
Score = 116 bits (293), Expect = 6e-33
Identities = 41/67 (61%), Positives = 51/67 (76%)
Query: 4 ETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYVFEVVVDKKYVPASVLDVFNQEPTIL 63
E +P KW+VENSWGE+ KGY +M+ WF EYV++VVVDKKY+P VLD+ QEP +L
Sbjct: 371 EDGKPVKWKVENSWGEKVGKKGYFVMSDDWFDEYVYQVVVDKKYLPEEVLDLLKQEPIVL 430
Query: 64 PAWDPMG 70
P WDPMG
Sbjct: 431 PPWDPMG 437
>gnl|CDD|202517 pfam03051, Peptidase_C1_2, Peptidase C1-like family. This family
is closely related to the Peptidase_C1 family pfam00112,
containing several prokaryotic and eukaryotic
aminopeptidases and bleomycin hydrolases.
Length = 438
Score = 113 bits (285), Expect = 9e-32
Identities = 39/67 (58%), Positives = 50/67 (74%)
Query: 4 ETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYVFEVVVDKKYVPASVLDVFNQEPTIL 63
+ +PTKW+VENSWG++ KGY +M+ WF EYV++VVVDKKY+P VL QEP +L
Sbjct: 372 DDGKPTKWKVENSWGDDSGKKGYFVMSDEWFDEYVYQVVVDKKYLPEEVLAALEQEPIVL 431
Query: 64 PAWDPMG 70
P WDPMG
Sbjct: 432 PPWDPMG 438
>gnl|CDD|226107 COG3579, PepC, Aminopeptidase C [Amino acid transport and
metabolism].
Length = 444
Score = 98.3 bits (245), Expect = 3e-26
Identities = 33/71 (46%), Positives = 48/71 (67%)
Query: 4 ETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYVFEVVVDKKYVPASVLDVFNQEPTIL 63
ET P +W+VENSWG++ KGY + + W EY +++VVDKK++P L + +EP +L
Sbjct: 374 ETGNPLRWKVENSWGKDVGKKGYFVASDAWMDEYTYQIVVDKKFLPKEELAAYEEEPIVL 433
Query: 64 PAWDPMGTLAQ 74
WDPMG LA+
Sbjct: 434 APWDPMGALAK 444
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 30.6 bits (69), Expect = 0.042
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 11 WRVENSWGEEQNHKGYILMTSPWFKEYVFEVVV 43
+ V+NSWG + GY ++ E F V
Sbjct: 191 FIVKNSWGTDWGDNGYGRISYEDVYEMTFGANV 223
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 29.7 bits (66), Expect = 0.086
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 5 TEEPTKWRVENSWGEEQNHKGYILMT 30
T E W ++NSWGE+ KGY+ +T
Sbjct: 298 TGEVPYWVIKNSWGEDWGEKGYVRVT 323
>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related
proteins of the D-specific 2-hydroxy dehydrogenase
family. This group contains a variety of proteins
variously identified as glycerate dehydrogenase (GDH,
also known as hydroxypyruvate reductase) and other
enzymes of the 2-hydroxyacid dehydrogenase family. GDH
catalyzes the reversible reaction of (R)-glycerate +
NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid
dehydrogenases catalyze the conversion of a wide variety
of D-2-hydroxy acids to their corresponding keto acids.
The general mechanism is (R)-lactate + acceptor to
pyruvate + reduced acceptor. Formate/glycerate and
related dehydrogenases of the D-specific 2-hydroxyacid
dehydrogenase superfamily include groups such as formate
dehydrogenase, glycerate dehydrogenase, L-alanine
dehydrogenase, and S-adenosylhomocysteine hydrolase.
Despite often low sequence identity, these proteins
typically have a characteristic arrangement of 2 similar
subdomains of the alpha/beta Rossmann-fold NAD+ binding
form. The NAD+ binding domain is inserted within the
linear sequence of the mostly N-terminal catalytic
domain, which has a similar domain structure to the
internal NAD binding domain. Structurally, these domains
are connected by extended alpha helices and create a
cleft in which NAD is bound, primarily to the C-terminal
portion of the 2nd (internal) domain. Some related
proteins have similar structural subdomain but with a
tandem arrangement of the catalytic and NAD-binding
subdomains in the linear sequence. While many members of
this family are dimeric, alanine DH is hexameric and
phosphoglycerate DH is tetrameric.
Length = 306
Score = 28.6 bits (65), Expect = 0.18
Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 52 VLDVFNQEPTILPAWDP 68
VLDVF QEP LPA P
Sbjct: 245 VLDVFEQEP--LPADHP 259
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 28.1 bits (63), Expect = 0.29
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 11 WRVENSWGEEQNHKGY 26
W V+NSWG KGY
Sbjct: 206 WIVKNSWGSSWGEKGY 221
>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase
NAD-binding and catalytic domains.
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene
PdxB), a D-specific 2-hydroxyacid dehydrogenase family
member, catalyzes the NAD-dependent oxidation of
erythronate-4-phosphate, which is followed by
transamination to form 4-hydroxy-L-threonine-4-phosphate
within the de novo biosynthesis pathway of vitamin B6.
D-Erythronate-4-phosphate dehydrogenase has the common
architecture shared with D-isomer specific 2-hydroxyacid
dehydrogenases but contains an additional C-terminal
dimerization domain in addition to an NAD-binding domain
and the "lid" domain. The lid domain corresponds to the
catalytic domain of phosphoglycerate dehydrogenase and
other proteins of the D-isomer specific 2-hydroxyacid
dehydrogenase family, which include groups such as
formate dehydrogenase, glycerate dehydrogenase,
L-alanine dehydrogenase, and S-adenosylhomocysteine
hydrolase. Despite often low sequence identity, these
proteins typically have a characteristic arrangement of
2 similar subdomains of the alpha/beta Rossmann fold
NAD+ binding form. The NAD+ binding domain is inserted
within the linear sequence of the mostly N-terminal
catalytic domain, which has a similar domain structure
to the internal NAD binding domain. Structurally, these
domains are connected by extended alpha helices and
create a cleft in which NAD is bound, primarily to the
C-terminal portion of the 2nd (internal) domain. Some
related proteins have similar structural subdomain but
with a tandem arrangement of the catalytic and
NAD-binding subdomains in the linear sequence.
Length = 343
Score = 28.3 bits (64), Expect = 0.29
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 52 VLDVFNQEPTILPA 65
VLDV+ EP I
Sbjct: 229 VLDVWENEPEIDLE 242
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 28.4 bits (63), Expect = 0.29
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 4 ETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYVFEVVVDKK 46
R E SW E N I ++ WFK YV +VV K
Sbjct: 2906 AVLNSLFSRKEKSWFEVYN----ISLSFGWFKRYVEDVVYPIK 2944
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 27.5 bits (62), Expect = 0.40
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWG + GY +
Sbjct: 139 WIVKNSWGTDWGENGYFRI 157
>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid
dehydrogenase. 2-Hydroxyacid dehydrogenases catalyze
the conversion of a wide variety of D-2-hydroxy acids to
their corresponding keto acids. The general mechanism is
(R)-lactate + acceptor to pyruvate + reduced acceptor.
Formate/glycerate and related dehydrogenases of the
D-specific 2-hydroxyacid dehydrogenase superfamily
include groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomains but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. While many members of this family are dimeric,
alanine DH is hexameric and phosphoglycerate DH is
tetrameric. Formate dehydrogenase (FDH) catalyzes the
NAD+-dependent oxidation of formate ion to carbon
dioxide with the concomitant reduction of NAD+ to NADH.
FDHs of this family contain no metal ions or prosthetic
groups. Catalysis occurs though direct transfer of the
hydride ion to NAD+ without the stages of acid-base
catalysis typically found in related dehydrogenases.
FDHs are found in all methylotrophic microorganisms in
energy production and in the stress responses of plants.
Length = 313
Score = 27.5 bits (62), Expect = 0.43
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 6/20 (30%)
Query: 52 VLDVFNQEPTILPA----WD 67
LDVF +EP LPA WD
Sbjct: 248 ALDVFEEEP--LPADSPLWD 265
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 27.5 bits (62), Expect = 0.54
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 5 TEEPTK-WRVENSWGEEQNHKGYILM 29
TE W V+NSWG + GY +
Sbjct: 171 TENGVPYWIVKNSWGTDWGENGYFRI 196
>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific
2-hydroxyacid-related dehydrogenase.
Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the
NADP-dependent reduction of hydroxyphenylpyruvates,
hydroxypyruvate, or pyruvate to its respective lactate.
HPPR acts as a dimer and is related to D-isomer-specific
2-hydroxyacid dehydrogenases, a superfamily that
includes groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-Adenosylhomocysteine Hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomain but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. While many members of this family are dimeric,
alanine DH is hexameric and phosphoglycerate DH is
tetrameric.
Length = 301
Score = 27.4 bits (62), Expect = 0.60
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 53 LDVFNQEPTILPAW 66
LDVF EP + A
Sbjct: 252 LDVFENEPNVPAAL 265
>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases.
Phosphoglycerate dehydrogenases (PGDHs) catalyze the
initial step in the biosynthesis of L-serine from
D-3-phosphoglycerate. PGDHs come in 3 distinct
structural forms, with this first group being related to
2-hydroxy acid dehydrogenases, sharing structural
similarity to formate and glycerate dehydrogenases of
the D-specific 2-hydroxyacid dehydrogenase superfamily,
which also include groups such as L-alanine
dehydrogenase and S-adenosylhomocysteine hydrolase.
Despite often low sequence identity, these proteins
typically have a characteristic arrangement of 2 similar
subdomains of the alpha/beta Rossmann fold NAD+ binding
form. The NAD+ binding domain is inserted within the
linear sequence of the mostly N-terminal catalytic
domain, which has a similar domain structure to the
internal NAD binding domain. Structurally, these domains
are connected by extended alpha helices and create a
cleft in which NAD is bound, primarily to the C-terminal
portion of the 2nd (internal) domain. Some related
proteins have similar structural subdomain but with a
tandem arrangement of the catalytic and NAD-binding
subdomains in the linear sequence. Many, not all,
members of this family are dimeric.
Length = 308
Score = 27.1 bits (61), Expect = 0.71
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 53 LDVFNQEPTILPAWDPMGTL 72
LDVF+ EP LPA P+ L
Sbjct: 257 LDVFDVEP--LPADHPLRGL 274
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 26.4 bits (59), Expect = 1.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWG KGYI +
Sbjct: 176 WIVKNSWGTSWGEKGYIRI 194
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 26.2 bits (57), Expect = 1.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MDQETEEPTKWRVENSWGEEQNHKGY 26
++ E E+ + W V NSWG+ +GY
Sbjct: 734 INDEDEKKSYWIVRNSWGKYWGDEGY 759
>gnl|CDD|235083 PRK02889, tolB, translocation protein TolB; Provisional.
Length = 427
Score = 25.7 bits (57), Expect = 2.2
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 59 EPTILPAWDPMGT 71
EP I PAW P GT
Sbjct: 196 EPIISPAWSPDGT 208
>gnl|CDD|173235 PRK14774, PRK14774, lipoprotein signal peptidase; Provisional.
Length = 185
Score = 25.4 bits (55), Expect = 3.0
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 6 EEPTKWRVENSWGEEQNHKGYILMTSPWF 34
++ TKW V WG + ++G I + +PW
Sbjct: 15 DQLTKWLV--VWGLDLANRGAIDLVAPWL 41
>gnl|CDD|215118 PLN02177, PLN02177, glycerol-3-phosphate acyltransferase.
Length = 497
Score = 25.2 bits (55), Expect = 3.5
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 8 PTKWRVENSWGEEQNHKGYILMTSP 32
P WRV NS+G K YI+ SP
Sbjct: 113 PETWRVFNSFG-----KRYIITASP 132
>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate
reductase B; Provisional.
Length = 323
Score = 25.1 bits (55), Expect = 3.6
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 50 ASVLDVFNQEPTILPAWDPMGTLA 73
A+ LDVF QEP L P+ +L
Sbjct: 257 AAGLDVFEQEP--LSVDSPLLSLP 278
>gnl|CDD|224272 COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense
mechanisms].
Length = 799
Score = 25.1 bits (55), Expect = 3.9
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 5 TEEPTK-----WRVENSWGEEQNHKGYILMTSPWFKEYVFEVVVD--KKYVPASV 52
TEE K + N W EQN K + + W + + + +K++
Sbjct: 312 TEEVRKILEEIEKELNEWLIEQNFKVDLYLELAWVELTLKDFYRRWFRKHLEKVS 366
>gnl|CDD|227342 COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein
[Cell envelope biogenesis, outer membrane].
Length = 797
Score = 25.0 bits (55), Expect = 4.4
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 34 FKEYVFEVVVDKKYVPASVLD----VFNQEPTILPAWDP 68
FK +V+ +DK PASV++ F W P
Sbjct: 461 FKPFVYSAALDKGLTPASVINDAPISFWDGGG-GGVWRP 498
>gnl|CDD|223534 COG0458, CarB, Carbamoylphosphate synthase large subunit (split
gene in MJ) [Amino acid transport and metabolism /
Nucleotide transport and metabolism].
Length = 400
Score = 24.6 bits (54), Expect = 5.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 34 FKEYVFEVVVDKKYVPASVLDVFNQEPTIL 63
+KE+ +EVV D K V ++ N +P +
Sbjct: 200 WKEFEYEVVRDGKDNCIVVCNMENLDPMGV 229
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 24.7 bits (54), Expect = 5.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 13 VENSWGEEQNHKGYI 27
++NSWGE KG+I
Sbjct: 450 IKNSWGESWGEKGFI 464
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been shown
to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X. Some
studies point to a role in early tumorigenesis. A more
recent study indicates that cathepsin X expression is
restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 24.3 bits (53), Expect = 8.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 11 WRVENSWGEEQNHKGYI 27
W V NSWGE +G+
Sbjct: 197 WIVRNSWGEPWGERGWF 213
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1740
Score = 24.3 bits (52), Expect = 8.6
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 2 DQETEEPTKWRVENSWGEE----------QNHKGYILMTSPWFKEYV 38
D ET+ K +V+ W E + +KG ++TSPW +V
Sbjct: 358 DPETKRVVKGKVKVIWKYELGEDVPKYEIKTNKGTKILTSPWHPFFV 404
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.425
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,739,558
Number of extensions: 273767
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 29
Length of query: 74
Length of database: 10,937,602
Length adjustment: 44
Effective length of query: 30
Effective length of database: 8,986,026
Effective search space: 269580780
Effective search space used: 269580780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)