RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17192
(74 letters)
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 106 bits (266), Expect = 2e-29
Identities = 48/72 (66%), Positives = 54/72 (75%)
Query: 2 DQETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYVFEVVVDKKYVPASVLDVFNQEPT 61
D + TKWRVENSWGE+ HKGY+ MT WF EYV+EVVVD+K+VP VL V QEP
Sbjct: 382 DDQDGAFTKWRVENSWGEDHGHKGYLCMTDEWFSEYVYEVVVDRKHVPEEVLAVLEQEPI 441
Query: 62 ILPAWDPMGTLA 73
ILPAWDPMG LA
Sbjct: 442 ILPAWDPMGALA 453
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1
protease, hydrolase; 1.73A {Saccharomyces cerevisiae}
PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A
1gcb_A
Length = 457
Score = 103 bits (257), Expect = 3e-28
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 1 MDQETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYVFEVVVDKKYVPASVLDVFN--- 57
+D+ ++ P ++RVENSWG++ G +MT +F+EY F++VVD +P + F
Sbjct: 382 VDETSKLPLRYRVENSWGKDSGKDGLYVMTQKYFEEYCFQIVVDINELPKELASKFTSGK 441
Query: 58 QEPTILPAWDPMGTLA 73
+EP +LP WDPMG LA
Sbjct: 442 EEPIVLPIWDPMGALA 457
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural
genomics, JO center for structural genomics, JCSG; HET:
MSE; 2.23A {Parabacteroides distasonis}
Length = 383
Score = 79.5 bits (195), Expect = 1e-19
Identities = 11/59 (18%), Positives = 25/59 (42%)
Query: 1 MDQETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYVFEVVVDKKYVPASVLDVFNQE 59
+ ++ E + V+NSWG + G + + + +VV K +P ++ +
Sbjct: 325 IAKDQEGNEYYMVKNSWGTNSKYNGIWYASKAFVRYKTMNIVVHKDALPKAIKAKLGIK 383
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB;
0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 34.8 bits (81), Expect = 7e-04
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWGEE GY+ M
Sbjct: 183 WLVKNSWGEEWGMGGYVKM 201
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 33.8 bits (78), Expect = 0.002
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWGEE GY+ M
Sbjct: 279 WLVKNSWGEEWGMGGYVKM 297
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 33.7 bits (78), Expect = 0.002
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W ++NSWG GY+ M
Sbjct: 185 WIMKNSWGTGWGRDGYMYM 203
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 33.2 bits (77), Expect = 0.003
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W ++NSWGE +KGYILM
Sbjct: 178 WIIKNSWGENWGNKGYILM 196
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET: O64;
1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 32.9 bits (76), Expect = 0.003
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWG +GYI M
Sbjct: 181 WLVKNSWGHNFGEEGYIRM 199
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH
2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP:
d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Length = 208
Score = 32.6 bits (75), Expect = 0.004
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V NSWG KGYI M
Sbjct: 169 WIVRNSWGRYWGEKGYIRM 187
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 32.5 bits (75), Expect = 0.005
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWG +GY+ +
Sbjct: 178 WIVKNSWGTTWGEEGYMRI 196
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP:
d.3.1.1 PDB: 1gec_E*
Length = 218
Score = 32.1 bits (74), Expect = 0.008
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 11 WRVENSWGEEQNHKGYILM 29
++NSWG KGY+ +
Sbjct: 175 IIIKNSWGPNWGEKGYMRL 193
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 32.1 bits (74), Expect = 0.008
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWG E KGYI M
Sbjct: 179 WTVKNSWGPEWGEKGYIRM 197
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD,
L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 31.7 bits (73), Expect = 0.008
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V NSWG+ ++GYI M
Sbjct: 174 WIVRNSWGQNWGNQGYIWM 192
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline
specificity, carboh papain family, hydrolase; HET: NAG
FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Length = 221
Score = 31.7 bits (73), Expect = 0.008
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWG+ GYI
Sbjct: 177 WIVKNSWGKNWGESGYIRA 195
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 31.9 bits (73), Expect = 0.009
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWG +GYI +
Sbjct: 184 WTVKNSWGPSWGEQGYIRV 202
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 31.8 bits (73), Expect = 0.009
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWG +GYI M
Sbjct: 278 WLVKNSWGHNFGEEGYIRM 296
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen, hydro; 1.40A {Fasciola
hepatica}
Length = 310
Score = 31.8 bits (73), Expect = 0.009
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWG +GYI M
Sbjct: 269 WIVKNSWGLSWGERGYIRM 287
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 31.5 bits (72), Expect = 0.010
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W ++NSWG GY
Sbjct: 292 WILKNSWGSGWGESGYWRQ 310
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 31.4 bits (72), Expect = 0.011
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W ++NSWGE +KGYILM
Sbjct: 277 WIIKNSWGENWGNKGYILM 295
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya}
SCOP: d.3.1.1 PDB: 1meg_A*
Length = 216
Score = 31.3 bits (72), Expect = 0.011
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 5 TEEPTK-WRVENSWGEEQNHKGYILM 29
++NSWG KGYI +
Sbjct: 168 KSGGKGYILIKNSWGTAWGEKGYIRI 193
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein,
hydrola protease, secreted, thiol protease; HET: P6G;
1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A
3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Length = 222
Score = 31.3 bits (72), Expect = 0.013
Identities = 7/19 (36%), Positives = 7/19 (36%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V NSW GY
Sbjct: 186 WIVRNSWDTNWGDNGYGYF 204
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase;
HET: E64 SO4; 1.87A {Carica candamarcensis}
Length = 213
Score = 31.3 bits (72), Expect = 0.014
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 11 WRVENSWGEEQNHKGYILM 29
++NSWG GYI +
Sbjct: 171 ILIKNSWGTGWGEGGYIRI 189
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP,
cysteine protease, allergen, protease, thiol protease;
1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B
3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A*
1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A*
5pad_A* 6pad_A* ...
Length = 212
Score = 31.3 bits (72), Expect = 0.014
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 11 WRVENSWGEEQNHKGYILM 29
++NSWG GYI +
Sbjct: 171 ILIKNSWGTGWGENGYIRI 189
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET:
E64; 2.10A {Jacaratia mexicana}
Length = 214
Score = 31.3 bits (72), Expect = 0.015
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 11 WRVENSWGEEQNHKGYILM 29
++NSWG KGYI +
Sbjct: 171 LLLKNSWGPNWGEKGYIRI 189
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A
{Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 31.0 bits (71), Expect = 0.017
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 5 TEEPTK-WRVENSWGEEQNHKGYILM 29
+E+ W +NSWGE+ GYI +
Sbjct: 177 SEDGVDYWIAKNSWGEDWGIDGYIRI 202
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase,
peptidase_C1A, hydrolase, in form; 1.31A {Crocus
sativus}
Length = 222
Score = 31.0 bits (70), Expect = 0.017
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWG E GYIL+
Sbjct: 179 WIVKNSWGTEWGIDGYILI 197
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A
{Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 31.0 bits (71), Expect = 0.018
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 11 WRVENSWGEEQNHKGYILM 29
+ ++NSWG + GYI +
Sbjct: 202 YIIKNSWGSDWGEGGYINL 220
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol
protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi}
PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A*
1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A*
1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A*
...
Length = 215
Score = 30.9 bits (71), Expect = 0.019
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W ++NSW + +GYI +
Sbjct: 178 WIIKNSWTTQWGEEGYIRI 196
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut;
1.85A {Tenebrio molitor}
Length = 331
Score = 31.1 bits (71), Expect = 0.019
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWG+ GY +
Sbjct: 294 WLVKNSWGDGWGLDGYFKI 312
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular
interaction, HY hydrolase inhibitor complex; 2.20A
{Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A
3bpf_A* 3pnr_A
Length = 241
Score = 30.6 bits (70), Expect = 0.020
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 11 WRVENSWGEEQNHKGYILM 29
+ ++NSWG++ +G+I +
Sbjct: 200 YIIKNSWGQQWGERGFINI 218
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 30.7 bits (70), Expect = 0.021
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 11 WRVENSWGEEQNHKGYILM 29
++NSWG KGYI +
Sbjct: 281 ILIKNSWGTAWGEKGYIRI 299
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase,
aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP:
d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Length = 220
Score = 30.5 bits (70), Expect = 0.022
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V+NSWG + GY L+
Sbjct: 182 WIVKNSWGPQWGMNGYFLI 200
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 30.7 bits (70), Expect = 0.022
Identities = 7/19 (36%), Positives = 7/19 (36%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V NSW GY
Sbjct: 266 WIVRNSWDTNWGDNGYGYF 284
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase;
HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Length = 214
Score = 30.1 bits (69), Expect = 0.030
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W ++NSWG + KGY +
Sbjct: 177 WAIKNSWGTDWGEKGYYYL 195
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
cathepsin, hydrolase, glycoprotein, thiol protease; HET:
DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Length = 265
Score = 29.6 bits (67), Expect = 0.049
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 11 WRVENSWGEEQNHKGYILM 29
W V NSWG +GY +
Sbjct: 221 WIVRNSWGPYWGDEGYFKV 239
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A
{Xylella fastidiosa}
Length = 291
Score = 29.8 bits (67), Expect = 0.052
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 11 WRVENSWGEEQNHKGYILMT 30
+R+ NSWG GY M
Sbjct: 251 FRIRNSWGNNVGEDGYFWMP 270
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 28.4 bits (64), Expect = 0.13
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 52 VLDVFNQEPTILPAWDP 68
+LDVF+QEP LP P
Sbjct: 252 MLDVFSQEP--LPQESP 266
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 28.2 bits (63), Expect = 0.17
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 4 ETEEPTK-WRVENSWGEEQNHKGYILM 29
++ W V+NSWG GY +
Sbjct: 391 DSASGMDYWIVKNSWGTGWGENGYFRI 417
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A
{Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 27.7 bits (62), Expect = 0.25
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 5 TEEPTK-WRVENSWGEEQNHKGYILM 29
+ T+ W V NSWGE +G++ +
Sbjct: 224 ISDGTEYWIVRNSWGEPWGERGWLRI 249
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 27.7 bits (62), Expect = 0.30
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 6/20 (30%)
Query: 52 VLDVFNQEPTILPA----WD 67
VLDVF QEP LPA W
Sbjct: 253 VLDVFEQEP--LPADSPLWG 270
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 27.3 bits (61), Expect = 0.40
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 5 TEEPTK-WRVENSWGEEQNHKGYILM 29
T W++ NSW E GY L+
Sbjct: 269 TSNGVPYWKIANSWNTEWGMDGYFLI 294
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 26.9 bits (60), Expect = 0.45
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 5 TEEPTK-WRVENSWGEEQNHKGYILM 29
E T W V NSW + G+ +
Sbjct: 271 VENGTPYWLVANSWNTDWGDNGFFKI 296
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 26.9 bits (60), Expect = 0.48
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 48 VPASVLDVFNQEPTILP 64
LDV+ EP P
Sbjct: 226 DLEVALDVWEGEPQADP 242
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 25.7 bits (57), Expect = 1.3
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 5 TEEPTK-WRVENSWGEEQNHKGYILM 29
E W + NSW E+ GY +
Sbjct: 210 VENKAPYWLIANSWNEDWGENGYFRI 235
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 25.7 bits (57), Expect = 1.4
Identities = 8/20 (40%), Positives = 8/20 (40%), Gaps = 6/20 (30%)
Query: 52 VLDVFNQEPTILPA----WD 67
LDV EP LP W
Sbjct: 250 ALDVTEPEP--LPTDHPLWQ 267
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 25.7 bits (57), Expect = 1.6
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 53 LDVFNQEPTILPAW 66
LDVF EP I +
Sbjct: 282 LDVFVNEPAIRSEF 295
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT,
cytoplasmic vesicle, membrane, Ca structural protein;
7.94A {Bos taurus}
Length = 190
Score = 25.5 bits (55), Expect = 1.6
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 2 DQETEEPTKWRVENSWGEEQN 22
D+ T+EP R W EEQ
Sbjct: 78 DRLTQEPESIR---KWREEQR 95
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 25.3 bits (56), Expect = 1.7
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 7/29 (24%)
Query: 5 TEEPTK-WRVENSWGE---EQNHKGYILM 29
E T W V NSW + G+ +
Sbjct: 214 VENGTPYWLVANSWNTDWGD---NGFFKI 239
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 25.3 bits (56), Expect = 2.1
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 48 VPASVLDVFNQEPTI 62
+ VLDV+ EP +
Sbjct: 229 PLSVVLDVWEGEPDL 243
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 24.9 bits (55), Expect = 2.5
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 53 LDVFNQEPTILPAW 66
LDVF +EP +
Sbjct: 275 LDVFEREPEVPEKL 288
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 2.8
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 9/71 (12%)
Query: 5 TEEPTKWRVENSWGEEQN-HKGYILMTSPWFKEYVFEVVVDKKYVPASVLDVFNQEPTIL 63
P + + + + Y M FE +VD K + N+ T
Sbjct: 1666 INNPVNLTIHFGGEKGKRIRENYSAMI--------FETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 64 PAWDPMGTLAQ 74
G L+
Sbjct: 1718 TFRSEKGLLSA 1728
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S-
adenosylmethionine, structural genomics, NPPSFA; 2.10A
{Thermus thermophilus} PDB: 2zie_A* 2zif_A
Length = 297
Score = 24.6 bits (54), Expect = 2.9
Identities = 2/27 (7%), Positives = 10/27 (37%)
Query: 11 WRVENSWGEEQNHKGYILMTSPWFKEY 37
G ++++ ++ ++E
Sbjct: 57 EDTPGQLGHIEDYEAFLDELDRVWREV 83
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 24.5 bits (54), Expect = 3.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 53 LDVFNQEPTILPA 65
LDVF EP I P
Sbjct: 287 LDVFANEPAIDPR 299
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 24.2 bits (53), Expect = 5.1
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 53 LDVFNQEPTILPA 65
LDV EP +
Sbjct: 280 LDVHEFEPQVSKE 292
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar
binding, sugar binding protein, beta-galactoside binding
lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A
{Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A*
1ulf_A* 1ulg_A* 1uld_A*
Length = 150
Score = 23.7 bits (51), Expect = 6.8
Identities = 6/40 (15%), Positives = 10/40 (25%), Gaps = 6/40 (15%)
Query: 15 NSWGEEQNHKGYILMTSPWFK------EYVFEVVVDKKYV 48
+WG E+ P F++ D
Sbjct: 70 GAWGPEERIPYAEKFRPPNPSITVIDHGDRFQIRFDYGTS 109
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU;
CAMP-dependent protein kinase,catalytic mechanism, ATP
hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A
{Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E*
1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A*
1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A*
3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Length = 350
Score = 23.4 bits (51), Expect = 8.2
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 11/50 (22%)
Query: 32 PWFKEYVFEVVVDKKYVP-----------ASVLDVFNQEPTILPAWDPMG 70
WF + + +K S D + +E + + G
Sbjct: 295 KWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEKCG 344
>2gig_A Type II restriction enzyme hincii; protein DNA complex, indirect
readout, DNA intercalation, endonuclease, hydrolase/DNA
complex; 1.83A {Haemophilus influenzae} PDB: 2gih_A
2gii_A 2gij_A 3e3y_A 3e40_A 3e41_A 3e42_A 3e43_A 3e44_A
3e45_A 1tx3_A 1tw8_A 1kc6_A 1xhu_A 1xhv_A 2gie_A 2aud_A
Length = 257
Score = 23.6 bits (50), Expect = 9.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 10 KWRVENSWGEEQNHKGYILMTSPWFKEYV 38
W +EN + E+QN IL+ F E +
Sbjct: 97 NWSIENLFEEKQNDTADILLVKDQFYELL 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.425
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,152,365
Number of extensions: 52185
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 62
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.2 bits)