RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17194
(871 letters)
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 142 bits (361), Expect = 1e-39
Identities = 63/141 (44%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Query: 108 GVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFARSL 167
G+L A A+ QL+ +P SG L DR G +++GL I LSTA+FA + VL AR L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 168 QGVGSAFADTSGLAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQFAGKEIP 227
QG G+AFA +G A+IAD + E ER ALG+ A I+ G L+ PP GG L QF G P
Sbjct: 61 QGFGAAFALVAGAALIADIYPPE-ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAP 119
Query: 228 FLILAFVSLLDGFMLLLVMKP 248
FL LA ++L +L ++
Sbjct: 120 FLFLAILALAAFILLAFLLPE 140
Score = 40.7 bits (96), Expect = 6e-04
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 527 ASAPSTGPPETPPFGGALYQFAGKEIPFLILAFVSLLDGFMLLLVMKP 574
++ + GP PP GG L QF G PFL LA ++L +L ++
Sbjct: 93 SAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 139 bits (353), Expect = 4e-36
Identities = 85/410 (20%), Positives = 164/410 (40%), Gaps = 58/410 (14%)
Query: 45 LVIVSTALLLDNMLYMVIVPIIPDYLRFIGAWGEEDQLQALNESRYHTKPHHREHAEGED 104
L+++ L + ++ P +P +G
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGL---------------------------SA 33
Query: 105 SATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFA 164
S G++ ++ ++ + + +G L DR G +++GL + L + L A S +L
Sbjct: 34 SQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVG 93
Query: 165 RSLQGVGSAFADTSGLAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQFAGK 224
R L G+G + A+IA+ F + ER +ALG+ A G L+ P GG L + G
Sbjct: 94 RFLLGLGGGALYPAAAALIAEWFPPK-ERGRALGLFSAGFGLGALLGPLLGGLLAESLGW 152
Query: 225 EIPFLILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKLFMDPYIAVCSGALLM 284
FLILA + LL +LL +++ + +A+ L
Sbjct: 153 RWLFLILAILGLLLALLLLFLLRLL-----------------------LLLALAFFLLSF 189
Query: 285 ANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKLYPTYQWLMV 344
L P +++ L + G++ + G ++ L+ + L++
Sbjct: 190 GYYGLLTYLPLY---LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLL 246
Query: 345 AVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLVDVRYVSVYGSI 404
GL+L L ++ + S +L++ + + FG+ ALL L G+
Sbjct: 247 I-GLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEAR---GTA 302
Query: 405 YAIADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAFMNILYAPVLIYLK 454
+ + SL A+GP++AG ++D G+ + ++A + +L A +L+ L
Sbjct: 303 SGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
Score = 72.3 bits (178), Expect = 2e-13
Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 30/243 (12%)
Query: 538 PPFGGALYQFAGKEIPFLILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKLFM 597
P GG L + G FLILA + LL +LL +++ +
Sbjct: 140 PLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLL---------------------- 177
Query: 598 DPYIAVCSGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVK 657
+A+ L L P +++ L + G++ + G ++
Sbjct: 178 -LLLALAFFLLSFGYYGLLTYLPLY---LQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 658 LAKLYPTYQWLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGY 717
L+ + L++ GL+L L ++ + S +L++ + + FG+ ALL
Sbjct: 234 LSDRLGRRRLLLLI-GLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292
Query: 718 LVDVRYVSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAFMNILYAPVLI 777
L G+ + + SL A+GP++AG ++D G+ + ++A + +L A +L+
Sbjct: 293 LAPPEAR---GTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349
Query: 778 YLK 780
L
Sbjct: 350 LLP 352
Score = 41.5 bits (98), Expect = 0.001
Identities = 31/179 (17%), Positives = 76/179 (42%), Gaps = 6/179 (3%)
Query: 601 IAVCSGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAK 660
+ + ++ + L P + L ED L + G+I + G ++ L+
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSD 59
Query: 661 LYPTYQWLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLVD 720
+ ++ +GL+L L ++ F++S +L++ + G + A +
Sbjct: 60 RFGR--RRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFP 117
Query: 721 VRYVSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAFMNILYAPVLIYL 779
+ G + + L +GP++ G + +++G+ L ++A + +L A +L++L
Sbjct: 118 PKER---GRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFL 173
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 114 bits (287), Expect = 1e-27
Identities = 83/320 (25%), Positives = 133/320 (41%), Gaps = 9/320 (2%)
Query: 105 SATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFA 164
+ G+L + ++ + P +G L DR G ++IGL + L L S +L
Sbjct: 32 TEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL 91
Query: 165 RSLQGVGSAFADTSGLAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQFAGK 224
R LQG+G + A+IAD F E ER +ALG+ A G + P GG L G
Sbjct: 92 RVLQGLGGGALFPAAAALIADWFPPE-ERGRALGLLSAGFGLGAALGPLLGGLLASLFGW 150
Query: 225 EIPFLILAFVSLLDGFM---LLLVMKPVKEQLNQKKPESHSTVPIWKLFMDPYIAVCSGA 281
FLILA ++LL + LL P ++ + VP WKL + + A
Sbjct: 151 RAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLA 210
Query: 282 LLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKLYPTYQW 341
LL+ A L + L+ E L G++ A G ++ +L+ +
Sbjct: 211 LLLFGFAFFALLTYLPLYQEV-LGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRR 269
Query: 342 LMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGIC-FGMALVDTALLPTLGYLVDVRYVSV 400
L++A+ L++ + T + +L + FG LV AL + L
Sbjct: 270 LLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEER-- 327
Query: 401 YGSIYAIADISYSLAYAIGP 420
G+ + + + SL A+GP
Sbjct: 328 -GTASGLYNTAGSLGGALGP 346
Score = 54.7 bits (132), Expect = 9e-08
Identities = 50/213 (23%), Positives = 83/213 (38%), Gaps = 8/213 (3%)
Query: 538 PPFGGALYQFAGKEIPFLILAFVSLLDGFM---LLLVMKPVKEQLNQKKPESHSTVPIWK 594
P GG L G FLILA ++LL + LL P ++ + VP WK
Sbjct: 138 PLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
Query: 595 LFMDPYIAVCSGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVI 654
L + + ALL+ A L + L+ E L G++ A G ++
Sbjct: 198 LLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEV-LGLSALLAGLLLGLAGLLGAIGRLL 256
Query: 655 TVKLAKLYPTYQWLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGIC-FGMALVDTALLP 713
+L+ + L++A+ L++ + T + +L + FG LV AL
Sbjct: 257 LGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNA 316
Query: 714 TLGYLVDVRYVSVYGSIYAIADISYSLAYAIGP 746
+ L G+ + + + SL A+GP
Sbjct: 317 LVSDLAPKEER---GTASGLYNTAGSLGGALGP 346
Score = 43.6 bits (103), Expect = 3e-04
Identities = 31/173 (17%), Positives = 72/173 (41%), Gaps = 5/173 (2%)
Query: 281 ALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKLYPTYQ 340
A +A + + L P + L++ ++L +IG++ + + +L+ + +
Sbjct: 4 AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63
Query: 341 WLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLVDVRYVSV 400
L++ GL+L L ++ F++S +L++ G + A +
Sbjct: 64 VLLI--GLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER-- 119
Query: 401 YGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAFMNILYAPVLIYL 453
G + + L A+GP++ G + G+ A ++A + +L A + L
Sbjct: 120 -GRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL 171
Score = 43.6 bits (103), Expect = 3e-04
Identities = 31/173 (17%), Positives = 72/173 (41%), Gaps = 5/173 (2%)
Query: 607 ALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKLYPTYQ 666
A +A + + L P + L++ ++L +IG++ + + +L+ + +
Sbjct: 4 AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63
Query: 667 WLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLVDVRYVSV 726
L++ GL+L L ++ F++S +L++ G + A +
Sbjct: 64 VLLI--GLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER-- 119
Query: 727 YGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAFMNILYAPVLIYL 779
G + + L A+GP++ G + G+ A ++A + +L A + L
Sbjct: 120 -GRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL 171
Score = 42.0 bits (99), Expect = 0.001
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Query: 94 PHHREHAEGEDSATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFA 153
P ++E G+L ++ + G L DR+G +++ L ++ L+ A
Sbjct: 226 PLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLA 285
Query: 154 C---GRSYGVLFFARSLQGVGSAFADTSGLAMIADRFTEENERSQALGIALAFISFGCLV 210
S L A L G G+ + A+++D +E ER A G+ S G +
Sbjct: 286 LLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKE-ERGTASGLYNTAGSLGGAL 344
Query: 211 AP 212
P
Sbjct: 345 GP 346
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 63.4 bits (155), Expect = 2e-10
Identities = 69/348 (19%), Positives = 129/348 (37%), Gaps = 45/348 (12%)
Query: 105 SATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFA 164
A G L + A+ + P L R+ ++ L + +S L A S+ VL A
Sbjct: 48 GAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLA 107
Query: 165 RSLQGV--GSAFADTSGLAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQFA 222
R+L G+ G ++ + LA R +R +AL + ++ ++ P G L Q
Sbjct: 108 RALAGLAHGVFWSIAAALAA---RLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF 164
Query: 223 GKEIPFLILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKLFMDPYIAVCSGAL 282
G FL +A ++LL +L ++ P E + + +L P + + A
Sbjct: 165 GWRATFLAIAVLALLALLLLWKLL-PPSEISGSLPGPLRT---LLRLLRRPGVLLGLLAT 220
Query: 283 LMAN----VALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITV------KL 332
+ ++ P ++E + ++ L FG+ + +L
Sbjct: 221 FLFMTGHFALYTYIRP----FLESVAGFSVSAVSLVLL------AFGIAGFIGNLLGGRL 270
Query: 333 AKLYPTYQWLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYL 392
A P + L+L L + F+ + L L +G A G
Sbjct: 271 ADRGPR---RALIAALLLLALALLALTFTGASPALAL-ALLFLWGFAFS----PALQGLQ 322
Query: 393 VDV-----RYVSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTAL 435
+ + GS+ A ++L A+G + G ++DA+G+ A
Sbjct: 323 TRLARLAPDAADLAGSLNVAA---FNLGIALGAALGGLVLDALGYAAT 367
Score = 34.5 bits (80), Expect = 0.25
Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 40/239 (16%)
Query: 538 PPFGGALYQFAGKEIPFLILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKLFM 597
P G L Q G FL +A ++LL +L ++ P E + + +L
Sbjct: 154 VPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLL-PPSEISGSLPGPLRT---LLRLLR 209
Query: 598 DPYIAVCSGALLMAN----VALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVV 653
P + + A + ++ P ++E + ++ L FG+
Sbjct: 210 RPGVLLGLLATFLFMTGHFALYTYIRP----FLESVAGFSVSAVSLVLL------AFGIA 259
Query: 654 ITV------KLAKLYPTYQWLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALV 707
+ +LA P + L+L L + F+ + L L +G A
Sbjct: 260 GFIGNLLGGRLADRGPR---RALIAALLLLALALLALTFTGASPALAL-ALLFLWGFAFS 315
Query: 708 DTALLPTLGYLVDV-----RYVSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTAL 761
G + + GS+ A ++L A+G + G ++DA+G+ A
Sbjct: 316 ----PALQGLQTRLARLAPDAADLAGSLNVAA---FNLGIALGAALGGLVLDALGYAAT 367
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 51.6 bits (124), Expect = 1e-06
Identities = 63/377 (16%), Positives = 125/377 (33%), Gaps = 33/377 (8%)
Query: 103 EDSATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLF 162
+ G +F++ + ++ G L+DR G + + + I + T L A +Y L+
Sbjct: 27 SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLY 86
Query: 163 FARSLQGVGSAFADTSGLAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQFA 222
R L G A + ++A F ER+ A+ I + G ++ P G +
Sbjct: 87 ILRVLLGAAEAPFFPGIILIVASWFPAS-ERATAVSIFNSAQGLGGIIGGPLVGWILIHF 145
Query: 223 GKEIPFLILAFVSLLDGFMLLLVMKPVKEQ-------------------LNQKKPESHST 263
+ F+I + ++ G + L + ++ K P +
Sbjct: 146 SWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKK 205
Query: 264 VPIWKLFMDPYIAVCSGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHV 323
I +L D + + + N+ L F ++ + G +
Sbjct: 206 YQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGF 265
Query: 324 FGVVITVKLAKLYPTYQWLMV----AVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGM- 378
G+++ +L+ L +V + L + + + + + G
Sbjct: 266 IGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN-YVNIPYAALALVALGFF 324
Query: 379 ALVDTALLPTLGYLVDVRYV--SVYGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTALN 436
L A+ L + G I ++ +L +GPIV G I G A
Sbjct: 325 GLGAGAIGWALISDNAPGNIAGLTGGLINSLG----NLGGIVGPIVIGAIAATTGSFAGA 380
Query: 437 FLIAFMNILYAPVLIYL 453
++ L L YL
Sbjct: 381 LMVVAALALIG-ALSYL 396
Score = 29.2 bits (66), Expect = 9.6
Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 13/206 (6%)
Query: 581 QKKPESHSTVPIWKLFMDPYIAVCSGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMI 640
K P + I +L D + + + N+ L F ++ + G +
Sbjct: 197 GKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFM 256
Query: 641 WLPAFFPHVFGVVITVKLAKLYPTYQWLMV----AVGLVLEGLCCFIIPFSTSYQMLMLP 696
G+++ +L+ L +V + L + + +
Sbjct: 257 ASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN-YVNIPYAA 315
Query: 697 ICGICFGM-ALVDTALLPTLGYLVDVRYV--SVYGSIYAIADISYSLAYAIGPIVAGGIV 753
+ + G L A+ L + G I ++ +L +GPIV G I
Sbjct: 316 LALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLG----NLGGIVGPIVIGAIA 371
Query: 754 DAIGFTALNFLIAFMNILYAPVLIYL 779
G A ++ L L YL
Sbjct: 372 ATTGSFAGALMVVAALALIG-ALSYL 396
>gnl|CDD|184957 PRK14995, PRK14995, methyl viologen resistance protein SmvA;
Provisional.
Length = 495
Score = 51.7 bits (124), Expect = 1e-06
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 120 MVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFARSLQGVGSAFADTSG 179
MV P GAL DRIG+ +M+G + L++ A + L R+L +G+A +
Sbjct: 57 MVLPM-GALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPAT 115
Query: 180 LAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGAL 218
LA I FTEE +R+ ALG+ A S G P GG L
Sbjct: 116 LAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGIL 154
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 50.3 bits (121), Expect = 3e-06
Identities = 61/354 (17%), Positives = 122/354 (34%), Gaps = 29/354 (8%)
Query: 106 ATGVLFASKAIVQLMVNPFSGALIDR------------IGYDLPMMIGLCIMFLSTALFA 153
+ ++ I +P GA+IDR + +P+ I L ++F + +
Sbjct: 37 VGTIFLVAR-IWDAFTDPIVGAIIDRTRTRWGKFRPWLLIGAIPLAISLVLLFATPFGLS 95
Query: 154 CGRSYGVLFFARSLQGVGSAFADTSGLAMIADRFTEENERSQALGIALAFISFGCL---- 209
F L G+ F + ++I + ER+ + G L
Sbjct: 96 MTAKLIYAFITYILLGLAYTFVNIPYWSLIPVLTRDPKERTSLASYRRIGATIGGLLVAV 155
Query: 210 VAPPFGGALYQFAGKEIPFLILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKL 269
+APP L G + FL +++L L+ KE+++ PE V + +
Sbjct: 156 IAPPLVALLGGGNGAKGYFLAALIIAILAVVGFLICFAGTKERVSVP-PEQKEKVSLRDM 214
Query: 270 F-----MDPYIAVCSGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVF 324
F P + + L+ +A+A + + L ++ L +
Sbjct: 215 FKALFKNRPLLILL-LLYLLNALAMAVRNGLLLYYFTYVLGNAGL-FSVLLLIGTIAAIL 272
Query: 325 GVVITVKLAKLYPTYQWLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTA 384
G + LAK + + ++ + L GL S + ++ + G+ L
Sbjct: 273 GAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLL 332
Query: 385 LLPTLGYLVDVRYV----SVYGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTA 434
L +VD G +++ + L A+G + G ++ G+ A
Sbjct: 333 PWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGAIVGLLLAFAGYVA 386
Score = 36.4 bits (85), Expect = 0.067
Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 12/216 (5%)
Query: 554 FLILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKLF-----MDPYIAVCSGAL 608
FL +++L L+ KE+++ PE V + +F P + +
Sbjct: 174 FLAALIIAILAVVGFLICFAGTKERVSVP-PEQKEKVSLRDMFKALFKNRPLLILL-LLY 231
Query: 609 LMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKLYPTYQWL 668
L+ +A+A + + L ++ L + G + LAK + +
Sbjct: 232 LLNALAMAVRNGLLLYYFTYVLGNAGL-FSVLLLIGTIAAILGAPLWPWLAKRFGKKRTF 290
Query: 669 MVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLVDVRYV---- 724
++ + L GL S + ++ + G+ L L +VD
Sbjct: 291 LLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGK 350
Query: 725 SVYGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTA 760
G +++ + L A+G + G ++ G+ A
Sbjct: 351 RREGITFSLYSFADKLGGALGGAIVGLLLAFAGYVA 386
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 48.1 bits (115), Expect = 1e-05
Identities = 68/359 (18%), Positives = 120/359 (33%), Gaps = 50/359 (13%)
Query: 125 SGALIDRIGYDLPMMIGLCIMFLSTALF---ACGRSYGVLFFARSLQGVGSAFADTSGLA 181
+G LI ++GY +++GL + + ALF A +SYG A + G +T+
Sbjct: 68 AGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANP 127
Query: 182 MIADRFTEENERSQALGIALAFISFGCLVAPPFGGAL-----YQFAGKEI---------- 226
+ E+ + L +A AF G ++ P G +L
Sbjct: 128 YVTLLGKPESA-AFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADAS 186
Query: 227 ----PFLILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKLFMDPYIAVCSGAL 282
P+LILA + +L ++LL P + S S LF + ++ + A+
Sbjct: 187 SVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGSAGLS-SLFQNKHLRLGVLAI 245
Query: 283 LM---ANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKLYPTY 339
+ A VA+ + + + F G I L
Sbjct: 246 FLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFM---VGRFIGSALMSRIKPE 302
Query: 340 QWLM-VAVGLVLEGLCCFIIPFSTSY-QMLMLPICGICFGMALVDTALLPT---LGYLVD 394
++L A+ + L + + L + G+ + + PT L
Sbjct: 303 KYLAFYALIAI---LLLLAVALIGGVVALYALFLIGLFNSI------MFPTIFSLALKNL 353
Query: 395 VRYVSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAFMNILYAPVLIYL 453
+ SV + +A + AI P + G I D G + Y VL +
Sbjct: 354 GEHTSVGSGLLVMAIVG----GAIIPPLQGVIADMFGIQLTFL--IVPLLCYLYVLFFA 406
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 46.9 bits (112), Expect = 3e-05
Identities = 66/346 (19%), Positives = 126/346 (36%), Gaps = 27/346 (7%)
Query: 102 GEDSATGVLFASKAIVQLMVNPFSGALIDR-------IGYDLPMMIGLCIMFLSTALFAC 154
G S + + + ++++P +GAL DR IG DL + + + L
Sbjct: 31 GSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADL--IRAVLVAVLPFVALLG 88
Query: 155 GRSYGVLFFARSLQGVGSAFADTSGLAMIADRFTEENERSQALGIALAFISFGCLVAPPF 214
G + ++ + + AF + AM+ D EE + +QA ++ A S +V P
Sbjct: 89 GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE-QLTQANSLSQAVRSLFYIVGPGI 147
Query: 215 GGALYQFAGKEIPFLILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWK----LF 270
GG +Y G + + A + +++ V P + + + +
Sbjct: 148 GGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVL 207
Query: 271 MDPYI-AVCSGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVI- 328
+P + + ALL V + L + G W+ A F G ++
Sbjct: 208 KNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYG--WVLAAF--GLGALLG 263
Query: 329 --TVKLAKLYPTYQWLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALL 386
+ L Y LM V+ GL ++ + L L + F + + +
Sbjct: 264 ALLLGLLGRYFKRMALMTGAIFVI-GLAILVVGLTPPNFPLFLV---LWFAIGVGYGPIN 319
Query: 387 PTLGYLVDVRYVSVY-GSIYAIADISYSLAYAIGPIVAGGIVDAIG 431
G L+ R + G ++ A+ +G I+AG + D +G
Sbjct: 320 VPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 45.7 bits (108), Expect = 7e-05
Identities = 92/363 (25%), Positives = 150/363 (41%), Gaps = 46/363 (12%)
Query: 107 TGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFARS 166
+G++F+ + + +PF G L DR G + ++ M + L ++ R+
Sbjct: 56 SGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRA 115
Query: 167 LQGVGSAFADTSGLAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQFAGKEI 226
L G+ F + A+IA + N+ ALG G L+ P GG L G
Sbjct: 116 LLGLLGGFVPNAN-ALIATQ-VPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRP 173
Query: 227 PFLILAFVSLLDGFMLLLVMK----PV--KEQLNQKKPESHSTVPIWKLFMDPYIAVCSG 280
F I A V L + L ++ PV KE L+ ++ + P KL + ++
Sbjct: 174 VFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNP--KLVLSLFVTT--- 228
Query: 281 ALLMANVALAFLEPTISLWIED---NLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKL-- 335
L+ VA + P ++L++ + N++ + GMI A P V ++ +L KL
Sbjct: 229 --LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMI---ASVPGVAALLSAPRLGKLGD 283
Query: 336 -YPTYQWLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLVD 394
+ L+ A L+ L +IP S L L I G A D ALLP + L+
Sbjct: 284 RIGPEKILITA--LIFSVL--LLIPMSFVQTPLQLGILRFLLGAA--DGALLPAVQTLL- 336
Query: 395 VRYVSVYGSIYAIAD--ISYSLAY-----AIGPIVAGGIVDAIGFTALNFLIA---FMNI 444
VY S IA SY+ ++ GP++ I GF A+ + A N
Sbjct: 337 -----VYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNA 391
Query: 445 LYA 447
+Y+
Sbjct: 392 VYS 394
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 45.1 bits (105), Expect = 1e-04
Identities = 53/298 (17%), Positives = 104/298 (34%), Gaps = 5/298 (1%)
Query: 99 HAEGEDSATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTAL--FACGR 156
G+L ++ + + + +G L DR G ++IGL + L T L A
Sbjct: 33 SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNV 92
Query: 157 SYGVLFFARSLQGVGSAFADTSGLAMIADRFTEENERSQALGI-ALAFISFGCLVAPPFG 215
+L R LQG+G A++++ F E ER A+G+ L + G + P
Sbjct: 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLA 152
Query: 216 GALYQFAGKEIPFLILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKLFMDPYI 275
G L + ++ L G +LL+++ + L + + + +L +
Sbjct: 153 GLLLGAL--LWGWRAAFLLAALLGLLLLILVLLLDLLLAAPRLPLAVGLALIELGKLLLL 210
Query: 276 AVCSGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKL 335
+ + + L + L + +++ A V ++ L
Sbjct: 211 LLILLLGGLVLLLLGLYLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGAAGGL 270
Query: 336 YPTYQWLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLV 393
+ L+L GL + ++ + L+ ALL + LV
Sbjct: 271 SALVGAAGGLLALILLGLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAILLLV 328
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 45.1 bits (107), Expect = 1e-04
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 10/159 (6%)
Query: 115 AIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFARSLQGVGSAF 174
A QL+ P S DR G +++GL I LS+ A + L R +Q G++
Sbjct: 54 AAGQLLWGPLS----DRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASA 109
Query: 175 ADTSGLAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQFAGKEIPFLILAFV 234
A++ D + E E S+ I + ++ VAP GG + + F L+
Sbjct: 110 GSVISQALVRDIYPGE-ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA 168
Query: 235 SLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKLFMDP 273
+L + L+ + E L + ST ++ F+
Sbjct: 169 GIL---LSALIFFILPETLPYEARIQIST--YFETFLLL 202
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 44.5 bits (106), Expect = 2e-04
Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 16/143 (11%)
Query: 124 FSGALIDRIGYDLPMMIGLCIMFLST--ALFACGRSYGVLFFARSLQGVGSAFADTSGLA 181
F G L DR+G +++G+ I L T ALFA S VL A ++QG+G+
Sbjct: 62 FYGPLSDRVGRRPVILVGMSIFILGTLVALFA--HSLTVLIAASAIQGLGTGVGGVMART 119
Query: 182 MIADRFTEENERSQALGIALAFISFGC----LVAPPFGGALYQFAGKEIPFLILAFVSLL 237
+ D + R A + ++ G L+AP GG L G +L L LL
Sbjct: 120 LPRDLYEGTQLRH-----ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL---LL 171
Query: 238 DGFMLLLVMKPVKEQLNQKKPES 260
+ + + + E +
Sbjct: 172 GAGVTFSMARWMPETRPADARRT 194
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 43.4 bits (103), Expect = 4e-04
Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 5/161 (3%)
Query: 89 RYHTKPHHREHAEGEDSATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLS 148
+ +G++ + ++ L+ + F+G L DR G ++IG + +
Sbjct: 30 KRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIG 89
Query: 149 TAL--FACGRSYGVLFFARSLQGVGSAFADTSGLA-MIADRFTEENERSQALGIALAFIS 205
L FA G+S+ +L R + G+G S L M + R + I+
Sbjct: 90 ALLQGFAKGKSFYMLIVGRVIVGLGVGGI--SVLVPMYISEIAPKKLRGALGSLYQLGIT 147
Query: 206 FGCLVAPPFGGALYQFAGKEIPFLILAFVSLLDGFMLLLVM 246
FG LVA G L +++ + + L + +L+ ++
Sbjct: 148 FGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLL 188
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 43.4 bits (103), Expect = 4e-04
Identities = 61/269 (22%), Positives = 100/269 (37%), Gaps = 45/269 (16%)
Query: 115 AIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFARSLQGVGSAF 174
+Q ++ P S DRIG M+ G+ L+ +S R LQG+G F
Sbjct: 62 MFLQWLLGPLS----DRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCF 117
Query: 175 ADTSGLAMIADRFTEENE-RSQALGIALAFISFGCLVAPPFGGALYQFAGKEIPFLILAF 233
G A I + F E + + AL +A ++ L+ P G AL F++ A
Sbjct: 118 IGAVGYAAIQESFEEADAIKITALMANVALLA--PLLGPLVGAALIHVLPWRGMFVLFAA 175
Query: 234 VSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKLFMDPYIAVCSGAL--------LMA 285
++ L F L M ++ +K + + +GAL L+A
Sbjct: 176 LAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKN--RRFVAGALALGLVSLPLLA 233
Query: 286 NVALAFLEPTI------------SLW--------IEDNLT----TDNWKIGMIWLPAFFP 321
+AL+ P I L I NLT T + + +P
Sbjct: 234 WIALS---PVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWP 290
Query: 322 HVFGVVITVKLAKLYPTYQWLMVAVGLVL 350
V G+++ LA + ++ +L + GL L
Sbjct: 291 MVAGLLLAA-LATVISSHAYLWLTAGLSL 318
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 41.0 bits (96), Expect = 0.002
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 11/149 (7%)
Query: 105 SATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACG--RSYGVLF 162
S S+ LM G DR G LPM+ I+ S ACG Y +F
Sbjct: 51 SLISAALISRWFGALMF----GLWGDRYGRRLPMVT--SIVLFSAGTLACGFAPGYITMF 104
Query: 163 FARSLQGVGSAFADTSGLAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQFA 222
AR + G+G S A + + + + R++A G+ ++ + G +VA +
Sbjct: 105 IARLVIGIGMGGEYGSSAAYVIESWPKH-LRNKASGLLISGYAVGAVVAAQVYSLVVPVW 163
Query: 223 GKEIPFLILAFVSLLDGFMLLLVMKPVKE 251
G + L F+S+L L + K + E
Sbjct: 164 G--DGWRALFFISILPIIFALWLRKNIPE 190
>gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 455
Score = 40.9 bits (96), Expect = 0.003
Identities = 79/347 (22%), Positives = 124/347 (35%), Gaps = 47/347 (13%)
Query: 117 VQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVL---FFARSLQGVGSA 173
V P S L++R G ++ G + S + S V+ A + G+G A
Sbjct: 66 VLYAGGPISSILVNRFGCRPVVIAGGLLA--SLGMILASFSSNVIELYLTAGFITGLGLA 123
Query: 174 FADTSGLAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQFAGKEIPFLILAF 233
F L M+ F R A G+A+A P L++ G FLIL
Sbjct: 124 FNFQPSLTMLGKYF--YRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGG 181
Query: 234 VSLLDGFMLLLVMKPVKEQLNQKKPESH---------------STVPIWKLFMD------ 272
+ LL + +M+PV K +S ST F+D
Sbjct: 182 L-LLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTH 240
Query: 273 -PYIAVCSGALLMANVALAFLEPTISL--WIEDNLTTDNWKIGMIWLPAFFPHVF----G 325
++ SG ++M L F P I L + +D + ++ + F G
Sbjct: 241 RGFLVYLSGNVIM---FLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCG 297
Query: 326 VVITVKLAKLYPTYQWLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTAL 385
++ +K + P Q+L + L+ GL + + Y L++ V L
Sbjct: 298 LIAGLKW--IRPHVQYLF-SFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALL 354
Query: 386 LPTLGYLVDV-RYVSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIG 431
L LV R+ S G + I A IGP +AG +VDA
Sbjct: 355 FEVLMDLVGAQRFSSAVG----LVTIVECCAVLIGPPLAGRLVDATK 397
Score = 30.9 bits (70), Expect = 3.5
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 663 PTYQWLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLVDV- 721
P Q+L + L+ GL + + Y L++ V L L LV
Sbjct: 307 PHVQYLF-SFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQ 365
Query: 722 RYVSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIG 757
R+ S G + I A IGP +AG +VDA
Sbjct: 366 RFSSAVG----LVTIVECCAVLIGPPLAGRLVDATK 397
>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter;
Provisional.
Length = 399
Score = 40.6 bits (96), Expect = 0.003
Identities = 81/355 (22%), Positives = 137/355 (38%), Gaps = 54/355 (15%)
Query: 108 GVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTAL----FACGR----SYG 159
G++ + + + L+ P +G D +G ++ GLC LS L S
Sbjct: 54 GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLL 113
Query: 160 VLFFARSLQGVGSAFADT-SGLAMIADRFTEENERSQAL-GIALAFISFGCL-VAPPFGG 216
+L R L G+G + A T S L I R + GIA ++G L + P G
Sbjct: 114 LLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIA----TYGALAIGAPLGV 169
Query: 217 ALYQFAGKEIPFLILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKLFMDPYIA 276
LY + G L++ ++LL G +L V + + V + + +
Sbjct: 170 LLYHWGGLAGLGLLIMLLALL-GLLLARPRPAVP--PVKGERLPFRRV-LGR------VW 219
Query: 277 VCSGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVV-ITVKL--A 333
L +A++ + I+L+ W A +FGV + +L
Sbjct: 220 PYGMGLALASIGFGTIATFITLYYAAR----GWDGA-----ALALTLFGVAFVGARLLFG 270
Query: 334 KLYPTYQWLMVA-VGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYL 392
L L VA V L++E L ++ + S M ++ FG +LV P LG +
Sbjct: 271 NLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLV----FPALG-V 325
Query: 393 VDVRYVSVYG-----SIYAI-ADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAF 441
V+ V Y++ D+S + GP +AG + G+ ++ FL A
Sbjct: 326 EAVKRVPPQNRGAALGAYSVFLDLSLGIT---GP-LAGLVASWFGYPSI-FLAAA 375
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 40.3 bits (95), Expect = 0.003
Identities = 41/183 (22%), Positives = 66/183 (36%), Gaps = 20/183 (10%)
Query: 126 GALIDRIGYDLPMMIGLCIMFLSTALFACGRSYG--------VLFFARSLQGVGSAFADT 177
G DRIG ++I L +M + T L SY +L AR +QG S +
Sbjct: 56 GHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGF-SLGGEW 114
Query: 178 SGLAMIADRFTEENER---------SQALGIALAFISFGCLVAPPFGGALYQFAGKEIPF 228
G A+ + +R +G+ LA ++ L AL ++ G IPF
Sbjct: 115 GGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEW-GWRIPF 173
Query: 229 LILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKLFMDPYIAVCSGALLMANVA 288
L+ A + L+ G L ++ ++ PI + G L+
Sbjct: 174 LVSAVLVLI-GLYLRRNLEETPVFEKAQEKHKKKRGPIAETLTKHRKPFLLGLGLVIATT 232
Query: 289 LAF 291
F
Sbjct: 233 TTF 235
Score = 33.8 bits (78), Expect = 0.35
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 103 EDSATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALF 152
+SA VL S I+ + P SGAL DRIG ++I + L
Sbjct: 254 ANSALLVLMLS-LILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPL 302
>gnl|CDD|162096 TIGR00897, 2A0118, polyol permease family. This family of proteins
includes the ribitol and D-arabinitol transporters from
Klebsiella pneumoniae and the alpha-ketoglutarate
permease from Bacillus subtilis [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 402
Score = 40.2 bits (94), Expect = 0.004
Identities = 85/342 (24%), Positives = 126/342 (36%), Gaps = 35/342 (10%)
Query: 124 FSGALIDRIGYDLPMMIGLCIMFLSTALF---ACGR-SYGVLFFARSLQGVGSAFADTSG 179
SG + + IG MMIGL + + A F G +Y ++ ++G+G S
Sbjct: 67 ISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSF 126
Query: 180 LAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQFAGKEIPFLILA-FVSLLD 238
L + T+++ S A+G A S G V + + A E+ L A L
Sbjct: 127 LVWVVYN-TKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTG 185
Query: 239 GFMLLLVMK----PVKEQLNQKKPESHSTVPIWKLFMDPYIAVCSGALLMANVALAFLEP 294
G + L K P Q +K E I LF +P + + G + + N F
Sbjct: 186 GVIALFSNKDIFTPQHMQTREKFSELGKAATI--LFTNPNVLL-GGMVRIINTIGLFGFA 242
Query: 295 TI--SLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKLY---PTYQWLMVAVGLV 349
E +T W IW FF ++ VI + T +W VG
Sbjct: 243 VFLPMFVAELGFSTSEWL--QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFG-GVGCG 299
Query: 350 LEGLCCFIIPFSTSYQMLMLPICGICFGMALVD----TALLPTLGYLVDVRYVSVYGSIY 405
+ L + IP + + I I G+ L A+ PTL +SV
Sbjct: 300 IFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAPKHKGAAMSVLN--- 356
Query: 406 AIADISYSLAYAI-----GPIVAGGIVDAIGFTALNFLIAFM 442
A +S LA AI G A G+V F AL + AF+
Sbjct: 357 LSAGLSAFLAPAIAVLFIGFFGAIGVV--WIFAALYVVSAFL 396
Score = 29.4 bits (66), Expect = 8.7
Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 14/106 (13%)
Query: 672 VGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVD----TALLPTLGYLVDVRYVSVY 727
VG + L + IP + + I I G+ L A+ PTL +SV
Sbjct: 296 VGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAPKHKGAAMSVL 355
Query: 728 GSIYAIADISYSLAYAI-----GPIVAGGIVDAIGFTALNFLIAFM 768
A +S LA AI G A G+V F AL + AF+
Sbjct: 356 N---LSAGLSAFLAPAIAVLFIGFFGAIGVV--WIFAALYVVSAFL 396
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 39.0 bits (91), Expect = 0.008
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 126 GALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFARSLQGVGSAFADTSGLAMIAD 185
G L DRIG ++ G I L+ A S AR +QG F T G + +
Sbjct: 72 GPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQE 131
Query: 186 RFTEENERSQALGIALAFISFGCLVAPPFGGALYQFAGKEIPFLILAFVSLLDGFMLLLV 245
F + + + + I + + ++ P G AL F ++ F I+A + L+ LLL
Sbjct: 132 AF-GQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLA 190
Query: 246 M 246
M
Sbjct: 191 M 191
>gnl|CDD|129977 TIGR00899, 2A0120, sugar efflux transporter. This family of
proteins is an efflux system for lactose, glucose,
aromatic glucosides and galactosides, cellobiose,
maltose, a-methyl glucoside and other sugar compounds.
They are found in both gram-negative and gram-postitive
bacteria [Transport and binding proteins, Carbohydrates,
organic alcohols, and acids].
Length = 375
Score = 37.1 bits (86), Expect = 0.035
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 8/146 (5%)
Query: 106 ATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIM-FLSTALFACGRSYGVLFFA 164
G+ + AIV + V+ D G +++ C++ L+ LFA R+Y +L
Sbjct: 34 MIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVL 93
Query: 165 RSLQGVGSAFADTSGLAM--IADRFTEENERSQAL--GIALAFISFGCLVAPPFGGALYQ 220
L S+FA T+ + +A + R + + A IS ++ PP L
Sbjct: 94 GVLL---SSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL 150
Query: 221 FAGKEIPFLILAFVSLLDGFMLLLVM 246
G + FL A +L G ++ L +
Sbjct: 151 GFGFTVMFLTAALAFVLCGVLVWLFL 176
Score = 34.0 bits (78), Expect = 0.34
Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 284 MANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKLYPTYQW-- 341
+ +A A PT+SL++ + + IG+ + + G+ ++ LA YQ
Sbjct: 8 LTGIAGALQFPTLSLFLSEEVRARPAMIGLFYT---GSAIVGIAVSQLLAT-RSDYQGDR 63
Query: 342 -LMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLVDVRYVSV 400
++ +L L C + ++ +Y +L+ + G+ ++ + P L L +
Sbjct: 64 KGLILFCCLLAALACLLFAWNRNYFLLL--VLGVL--LSSFASTANPQLFALA-REHADR 118
Query: 401 YG----SIYAIADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAFMNILYAPVLIYL 453
G ++ SLA+ IGP +A + GFT + FL A + + VL++L
Sbjct: 119 TGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVM-FLTAALAFVLCGVLVWL 174
Score = 34.0 bits (78), Expect = 0.34
Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 610 MANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKLYPTYQW-- 667
+ +A A PT+SL++ + + IG+ + + G+ ++ LA YQ
Sbjct: 8 LTGIAGALQFPTLSLFLSEEVRARPAMIGLFYT---GSAIVGIAVSQLLAT-RSDYQGDR 63
Query: 668 -LMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLVDVRYVSV 726
++ +L L C + ++ +Y +L+ + G+ ++ + P L L +
Sbjct: 64 KGLILFCCLLAALACLLFAWNRNYFLLL--VLGVL--LSSFASTANPQLFALA-REHADR 118
Query: 727 YG----SIYAIADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAFMNILYAPVLIYL 779
G ++ SLA+ IGP +A + GFT + FL A + + VL++L
Sbjct: 119 TGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVM-FLTAALAFVLCGVLVWL 174
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 37.4 bits (87), Expect = 0.037
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 123 PFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFARSLQGVGSAFADTSGLAM 182
P +G L R G +I L + L + ++ R +QG G +
Sbjct: 55 PLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFST 114
Query: 183 IADRFTEENERSQALGIALAFISFGCLVAPPFGGAL 218
+ + + E G A+A LVAP G L
Sbjct: 115 LLNIYPPEK-----RGRAMAIWGLTVLVAPALGPTL 145
Score = 31.2 bits (71), Expect = 2.5
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 108 GVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFARSL 167
G+ + ++ +P +G + D+I + IGL + + A + F A +L
Sbjct: 294 GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIAL 353
Query: 168 Q------GVGSAFADTSGLAM 182
G+G F + +A+
Sbjct: 354 PQFIRGFGMGCFFMPLTTIAL 374
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 36.6 bits (85), Expect = 0.052
Identities = 64/348 (18%), Positives = 116/348 (33%), Gaps = 45/348 (12%)
Query: 140 IGLCIMFLSTALF--ACGRSYGVLFFARSLQGVGSAFADTSGLAMIADRFTEENERSQAL 197
IG+ + + + + A G ++ F R +QG+ + +I ++ ERS+ L
Sbjct: 111 IGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIV-KWAPPKERSRLL 169
Query: 198 GIALAFISFGCLVAPPFGGAL-----------YQFAGKEIPFLILAFVSLLDG-----FM 241
G++ + G + P G L Y F + +L FV D +
Sbjct: 170 GMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI 229
Query: 242 LLLVMKPVKEQLNQKKPESHSTVPIWKLFMDPYIAVCSGALLMANVALAFLEPTISLWIE 301
K + L +K + ++PI + + A+ L + +I
Sbjct: 230 SKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFIS 289
Query: 302 DNLTTDNWKIGMI-WLPAFFPHVFGVVITVKLAKLYPTYQWLMVAVGLVLEGLCCFIIPF 360
L + G++ LP F + + +L + L L I
Sbjct: 290 WVLRVSGKENGLLSSLPYLFAWLCSIFAGYLA-------DFLKSSKTLSLT-AARKIFNG 341
Query: 361 STSYQMLMLPICG----------ICFGMALVDTALLPTLGYLVDVRYVS--VYGSIYAIA 408
+ I + P G L++ ++ G I I
Sbjct: 342 IGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGIT 401
Query: 409 DISYSLAYAIGPIVAGGIV--DAIGFTALNFLI-AFMNILYAPVLIYL 453
+ + I +AG I+ D+ + FLI AF+NIL V+ YL
Sbjct: 402 GLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILC--VIFYL 447
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 36.4 bits (85), Expect = 0.056
Identities = 42/184 (22%), Positives = 69/184 (37%), Gaps = 37/184 (20%)
Query: 115 AIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFARSLQGVGSAF 174
A+ QL+ P L DR G ++ GL + L + S L R +Q VG
Sbjct: 55 ALGQLLWGP----LSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCS 110
Query: 175 ADTSGLAMIADRFTEENERSQ----------ALGIALAFISFGCLVAPPFGGALYQFAGK 224
A A++ DR+ +++ AL AL AP G L G
Sbjct: 111 AAVIWQALVIDRYPA--QKANRVFATIMPLVALSPAL---------APLLGAWLLNHFGW 159
Query: 225 EIPFLILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKLFMDP-YI------AV 277
+ F L ++LL ++L ++ + + + +S + +L Y+ A
Sbjct: 160 QAIFATLFAITLL---LILPTLRLKPSK--KARKQSQDALTFKQLLKSKTYLGNVLIFAA 214
Query: 278 CSGA 281
CS A
Sbjct: 215 CSAA 218
>gnl|CDD|218836 pfam05977, MFS_3, Transmembrane secretion effector. This is a
family of transport proteins. Members of this family
include a protein responsible for the secretion of the
ferric chelator, enterobactin, and a protein involved in
antibiotic resistance.
Length = 524
Score = 36.2 bits (84), Expect = 0.085
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 316 LPAFFPHVFGVVITVKLAKLYPTYQWLMVAVGLVLEGLCCFIIPFSTSYQ---MLMLPIC 372
LP F + I A + + ++ L+ + + +L+
Sbjct: 56 LPIFLLSIPAGAI----ADNFDRRKVMLAGQLLMAIASALLTVLAALGLLSPWLLLAFTF 111
Query: 373 GICFGMALVDTALLPTLGYLVDVRYVSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIG 431
I G AL D A ++G LV R V + A+ + Y+LA ++GP + G +V A G
Sbjct: 112 LIGIGTALNDPAWQASVGDLVPRRDVP---AAVALNSVGYNLARSVGPALGGLLVAAFG 167
Score = 36.2 bits (84), Expect = 0.085
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 642 LPAFFPHVFGVVITVKLAKLYPTYQWLMVAVGLVLEGLCCFIIPFSTSYQ---MLMLPIC 698
LP F + I A + + ++ L+ + + +L+
Sbjct: 56 LPIFLLSIPAGAI----ADNFDRRKVMLAGQLLMAIASALLTVLAALGLLSPWLLLAFTF 111
Query: 699 GICFGMALVDTALLPTLGYLVDVRYVSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIG 757
I G AL D A ++G LV R V + A+ + Y+LA ++GP + G +V A G
Sbjct: 112 LIGIGTALNDPAWQASVGDLVPRRDVP---AAVALNSVGYNLARSVGPALGGLLVAAFG 167
>gnl|CDD|184973 PRK15011, PRK15011, sugar efflux transporter B; Provisional.
Length = 393
Score = 35.2 bits (81), Expect = 0.13
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 10/151 (6%)
Query: 108 GVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIM-FLSTALFACGRSYGVLFFARS 166
G F A++ ++V+ F D+ G +++ C++ L+ LFA R+Y VL F
Sbjct: 54 GFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFV-- 111
Query: 167 LQGVG-SAFADTSGLAM--IADRFTEENERSQAL--GIALAFISFGCLVAPPFGGALYQF 221
GV S+F T+ M +A ++ R + A +S ++ PP AL
Sbjct: 112 --GVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG 169
Query: 222 AGKEIPFLILAFVSLLDGFMLLLVMKPVKEQ 252
+ +L A ++ G M+ L + ++++
Sbjct: 170 FSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE 200
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 34.9 bits (81), Expect = 0.17
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 104 DSATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTAL--FACGRSYGVL 161
+ +L + L+ L+ + G +IGL ++ + L F S ++
Sbjct: 271 ELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLI 330
Query: 162 FFARSLQGVGSAFADTSGLAMIADRFTEENERS--QALGIALAFISF 206
A + GVG+ A+ AM+AD ++ + GI + ++F
Sbjct: 331 VVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTF 377
Score = 32.2 bits (74), Expect = 1.4
Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 34/358 (9%)
Query: 106 ATGVLFASKAIVQLMVNPFSGALIDRI----GYDLPMMIG-------LCIMFLSTALFAC 154
G +F I+ + +P G ++DR G P ++ + ++ T F+
Sbjct: 49 LAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSM 108
Query: 155 GRSYGVLFFARSLQGVGSAFADTSGLAMIADRFTEENERSQ---------ALGIALAFIS 205
L G+G + A+ + + ER+ +LG L +
Sbjct: 109 TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVL 168
Query: 206 FGCLVAPPFGGAL---YQFAGKEIPFLILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHS 262
F LV GG YQ + ++ + LL F V + V E K
Sbjct: 169 FPPLVKLFGGGDKALGYQGTA--LVLGVIGVILLL--FCFFNVKERVVETQPTKTGVKLK 224
Query: 263 TVPIWKLFM--DPYIAVCSGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFF 320
+ L P + + LL+ +A + ++ L ++ L +
Sbjct: 225 LKDSFLLIFKNRPLLLLLLMNLLL-FIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGA 283
Query: 321 PHVFGVVITVKLAKLYPTYQWLMVAVGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMAL 380
+ G+++ +L K + + ++ + L+ G + S ++++ + G +
Sbjct: 284 GLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGI 343
Query: 381 VDTALLPTLGYLVDVRY----VSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTA 434
+ + VD V G +Y+ L A+ + G I+ AIG+
Sbjct: 344 ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVP 401
>gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional.
Length = 471
Score = 34.7 bits (80), Expect = 0.20
Identities = 42/140 (30%), Positives = 58/140 (41%), Gaps = 27/140 (19%)
Query: 120 MVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFA-----CGRSYGV--LFFARSLQGVGS 172
++ P SG L DR+G I F + LF C S + L AR LQGVG
Sbjct: 60 VMLPASGWLADRVGVR-------NIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGG 112
Query: 173 AFADTSGLAMIADRFTEEN--ERSQALGIALAFISF----GCLVAPPFGGALYQFAGKEI 226
A G R T R Q + A+ F++ G L+ P GG L ++A
Sbjct: 113 AMMVPVG------RLTVMKIVPREQYMA-AMTFVTLPGQVGPLLGPALGGLLVEYASWHW 165
Query: 227 PFLILAFVSLLDGFMLLLVM 246
FLI V ++ L++M
Sbjct: 166 IFLINIPVGIIGAIATLMLM 185
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 34.3 bits (79), Expect = 0.24
Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 5/190 (2%)
Query: 105 SATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFA 164
+A + F I M P G L D+ G M+G + L +A S L+
Sbjct: 38 TAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLT 97
Query: 165 RSLQGVGSAFADTSGLAM-IADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQFAG 223
L G A G+A+ A ++ + R A GI + G + P ++ G
Sbjct: 98 YGLASAGVGIA--YGIALNTAVKWFPDK-RGLASGIIIGGYGLGSFILSPLITSVINLEG 154
Query: 224 KEIPFLILAFVSLLDGFMLLLVMK-PVKEQLNQKKPESHSTVPIWKLFMDPYIAVCSGAL 282
F+ + + LL + ++ P + + S +W++ P V +
Sbjct: 155 VPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSF 214
Query: 283 LMANVALAFL 292
+ V+ L
Sbjct: 215 FLNAVSGLLL 224
>gnl|CDD|131289 TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphthoate
phytyltransferase. This family of phytyltransferases,
found in plants and cyanobacteria, are involved in the
biosythesis of phylloquinone (Vitamin K1). Phylloquinone
is a critical component of photosystem I. The closely
related MenA enzyme from bacteria transfers a prenyl
group (which only differs in the saturation of the
isoprenyl groups) in the biosynthesis of menaquinone.
Activity towards both substrates in certain organisms
should be considered a possibility [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 285
Score = 33.2 bits (76), Expect = 0.44
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 340 QWLMVAVGLVLEGLCCFI------IPFSTSYQMLMLPICGICFGMALVDTALLPTLGY 391
W L L GLCCF+ PF YQ L PIC +CFG + AL
Sbjct: 101 SWRWQITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS 158
Score = 33.2 bits (76), Expect = 0.44
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 666 QWLMVAVGLVLEGLCCFI------IPFSTSYQMLMLPICGICFGMALVDTALLPTLGY 717
W L L GLCCF+ PF YQ L PIC +CFG + AL
Sbjct: 101 SWRWQITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS 158
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 32.7 bits (75), Expect = 0.74
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Query: 124 FSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFARSLQGVGSAFADTSGLAMI 183
F G L DRIG ++ + + + T L A + L R L G+G + A++
Sbjct: 71 FFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALV 130
Query: 184 ADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQFAGKEIPFLILAFVSLLDGFMLL 243
++ + + R A+G+ G V G L G F + LL +LL
Sbjct: 131 SE-YAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLL---LLL 186
Query: 244 LVMKPVKE 251
L+M+ + E
Sbjct: 187 LLMRFLPE 194
>gnl|CDD|219227 pfam06912, DUF1275, Protein of unknown function (DUF1275). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown although a few members are
thought to be membrane proteins.
Length = 206
Score = 32.2 bits (74), Expect = 0.90
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 11/85 (12%)
Query: 302 DNLTTDNWKIGMIWLPAFFPHVFGVVITVKL------AKLYPTYQWLMVAVGLVLEGLCC 355
L NW + + L A V G + L +L L L+LE +
Sbjct: 39 VALAGGNWALALHKLLALLAFVLGAALAGLLIRLLRRRRLRRWLALL-----LLLEAVLL 93
Query: 356 FIIPFSTSYQMLMLPICGICFGMAL 380
++ I + F M L
Sbjct: 94 LAAALLPLALPPLIAIALLAFAMGL 118
Score = 32.2 bits (74), Expect = 0.90
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 11/85 (12%)
Query: 628 DNLTTDNWKIGMIWLPAFFPHVFGVVITVKL------AKLYPTYQWLMVAVGLVLEGLCC 681
L NW + + L A V G + L +L L L+LE +
Sbjct: 39 VALAGGNWALALHKLLALLAFVLGAALAGLLIRLLRRRRLRRWLALL-----LLLEAVLL 93
Query: 682 FIIPFSTSYQMLMLPICGICFGMAL 706
++ I + F M L
Sbjct: 94 LAAALLPLALPPLIAIALLAFAMGL 118
>gnl|CDD|217426 pfam03209, PUCC, PUCC protein. This protein is required for
high-level transcription of the PUC operon.
Length = 402
Score = 32.3 bits (74), Expect = 1.1
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 139 MIGLCIM-----FLSTALFACGR----SYGVLFFARSLQGVGSAFADTSGLAMIADRFTE 189
GL IM LS A G + A L G+G + T GLA+ D +
Sbjct: 61 AGGLAIMPFALIVLSGQGEAVGAPTWAGLILAALAFLLVGLGVHMSQTVGLALATDL-AD 119
Query: 190 ENERSQALGIALAFISFGCLVAPPFGGAL 218
E +R + +G+ + G +V+ G L
Sbjct: 120 EEDRPKVVGLMYVMLLVGIIVSAITVGWL 148
>gnl|CDD|188897 cd09498, SAM_caskin1,2_repeat2, SAM domain of caskin protein
repeat 2. SAM (sterile alpha motif) domain repeat 2 of
caskin1,2 proteins is a protein-protein interaction
domain. Caskin has two tandem SAM domains. Caskin
protein is known to interact with membrane-associated
guanylate kinase CASK, and may play a role in neural
development, synaptic protein targeting, and regulation
of gene expression.
Length = 71
Score = 29.6 bits (67), Expect = 1.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 23 VNEVKDIVWEKLQEPK-----SQRKLILVI 47
++ V D+ WE LQ+ Q+KL+L I
Sbjct: 34 IDFVTDLTWEDLQDIGITKLGHQKKLMLAI 63
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 32.3 bits (73), Expect = 1.6
Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 104 DSATGVLFASKAIVQLMVNPFS-GALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLF 162
DS G+L + +MV F G L D++G ++I L + + + YG
Sbjct: 201 DSGKGML-GLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFL 259
Query: 163 FARSLQGVGSAFADTSGLAMIADRFTEENERSQALGIALAFISFGCLVA--------PPF 214
F R L G G A + A+ +E +R + L F G + A P +
Sbjct: 260 FCRLLSGFGIGGAIPIVFSYFAEFLAQE-KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY 318
Query: 215 G-----GALYQFAGKEIPFLILAFVSL 236
G G+ YQF + ++ AF +
Sbjct: 319 GWSFQMGSAYQFHSWRVFVIVCAFPCV 345
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 31.6 bits (72), Expect = 1.8
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 126 GALIDRIGYDLPMMIGLCIMFLSTALFACGRS--YGVLFFARSLQGVGSA 173
GA+ DR G L M+I I+ S ACG + Y LF AR + G+G A
Sbjct: 76 GAMGDRYGRRLAMVIS--IVLFSVGTLACGFAPGYWTLFIARLVIGMGMA 123
>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional.
Length = 390
Score = 31.4 bits (72), Expect = 1.9
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 31/132 (23%)
Query: 136 LPMM------------IGLCIMF-LSTALFACGRSYGVLFFARSLQGVGSAFADT---SG 179
LP+M IGL ++F S L A ++ VL +R +G AFA S
Sbjct: 62 LPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISR----IGIAFAHAIFWSI 117
Query: 180 LAMIADRFTEENERSQALGIALAFISFGCLVAP----PFGGALYQFAGKEIPFLILAFVS 235
A +A R +++QAL + ++ G +A P G + Q+ G FL + +
Sbjct: 118 TASLAIRVAPAGKKAQALSL----LATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGA 173
Query: 236 LLDGFMLLLVMK 247
L+ LLL++K
Sbjct: 174 LI---TLLLLIK 182
>gnl|CDD|165132 PHA02767, PHA02767, hypothetical protein; Provisional.
Length = 101
Score = 28.8 bits (64), Expect = 3.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 437 FLIAFMNILYAPVLIYLKNIYDFKPFENEANILMA---DPPKKEYQTYTM 483
++I F N L + Y NIY F FE+E IL+ + KKEY+ M
Sbjct: 12 YIIQFRNWLESR---YSDNIYFFNVFEDEEIILIQIKINMKKKEYEKAGM 58
Score = 28.8 bits (64), Expect = 3.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 763 FLIAFMNILYAPVLIYLKNIYDFKPFENEANILMA---DPPKKEYQTYTM 809
++I F N L + Y NIY F FE+E IL+ + KKEY+ M
Sbjct: 12 YIIQFRNWLESR---YSDNIYFFNVFEDEEIILIQIKINMKKKEYEKAGM 58
>gnl|CDD|211613 TIGR00882, 2A0105, oligosaccharide:H+ symporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 396
Score = 30.9 bits (70), Expect = 3.5
Identities = 30/150 (20%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 107 TGVLFASKAIVQLMVNPFSGALIDRIGYDLPM---MIGLCIMFLSTALFACGRSYGVLFF 163
TG++F+ ++ ++ P G + D++G + + GL ++F ++ G
Sbjct: 40 TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNIL 99
Query: 164 ARSLQG---VGSAFADTSGLAMIADRFTEENERSQAL--GIALAFISFGCLVAPPFGGAL 218
++ G +G F+ +G + + E+ R+ G A F G + G L
Sbjct: 100 VGAIVGGLYLGFVFSAGAGA---IEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGIL 156
Query: 219 YQFAGKEIPFLILAFVSLLDGFMLLLVMKP 248
+ + + +L F +L +LL+ KP
Sbjct: 157 FSIDPQIVFWLGSGFALIL--MLLLMFAKP 184
>gnl|CDD|224202 COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and
metabolism].
Length = 533
Score = 30.7 bits (70), Expect = 4.3
Identities = 38/154 (24%), Positives = 55/154 (35%), Gaps = 10/154 (6%)
Query: 105 SATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSY---GVL 161
AT L S A + S I + + ++ ++ S A S G++
Sbjct: 152 QATEPLRQSPA-FSDFIAKLSDDPI--VALLIGALLTA-LIQSSLAAIGILLSLTSQGLI 207
Query: 162 FFARSLQGVGSAFADTSGLAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQF 221
+L V A T+ A++A R ALG L F G L+ P L F
Sbjct: 208 SLEAALALVLGANLGTTITAVLAALGASAAARRVALG-NLLFNLIGVLIFLPVIHLLATF 266
Query: 222 AGK--EIPFLILAFVSLLDGFMLLLVMKPVKEQL 253
A K P ++A LL +L L P L
Sbjct: 267 ASKLSLPPAALIAHAHLLFNIVLALAALPFTGLL 300
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 30.0 bits (68), Expect = 5.5
Identities = 69/346 (19%), Positives = 127/346 (36%), Gaps = 46/346 (13%)
Query: 123 PFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLF-FARSLQGVGSAFADTSGLA 181
F+G + DR G P+ I +F+ +L LF R LQG+G+ A
Sbjct: 56 LFAGKIADRSGRK-PVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFA 114
Query: 182 MIADRFTEENERSQALGIALAFISFGCLVAPPFGG-ALYQFAGKEIPFLILAFVSLLDGF 240
++ D + R++ L + ++AP G + +F + + F +A + +L
Sbjct: 115 ILRDTLDDR-RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSL-FYTMAAMGILVLL 172
Query: 241 MLLLVMK---PVKEQLNQKKPESHSTVPIWKLFMDPYIAVCSGALLMANVALAFLEPTIS 297
+ L ++K P + KP +S + + F+ + V L F+ +
Sbjct: 173 LSLFILKETRPARAPAASSKPRENSESLLNRFFLSRLVITTLS----VTVILTFVNTSPV 228
Query: 298 LWIED-NLTTDNWKIGMIWLPAFFPHVFGVVITV-----KLAKLYPTYQWLMVAVGLVLE 351
L +E + + I M GV +TV ++ ++ + L L
Sbjct: 229 LLMEQMGFSRGEYAIIMALTA-------GVSMTVSFSTPFALGIFKPRTLMLTSQVLFLA 281
Query: 352 GLCCFIIPFSTSYQMLMLPICG----ICFGMALVDTALLPTLGYLVDVRYVSVYGSIYAI 407
+ S + + + + + FG+A+ AL P V S I
Sbjct: 282 AGITLALSPSHAVSLFGITLICAGFSVGFGVAM-SQALGPF------SLRAGVASSTLGI 334
Query: 408 ADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAFMNILYAPVLIYL 453
A + S + I + +G +A N LI IL A ++ L
Sbjct: 335 AQVCGSSLW----IWLAAV---LGISAWNMLIG---ILIACSIVSL 370
>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional.
Length = 434
Score = 29.9 bits (68), Expect = 5.7
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 126 GALIDRIGYDLPMMIGLCIMFLSTALFACGRSY---GVL-----FFARSLQGVGSAFADT 177
GA IDR+G +++ L IM T L A Y G+ R LQG SA +
Sbjct: 77 GAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGF-SAGVEL 135
Query: 178 SG----LAMIA 184
G LA IA
Sbjct: 136 GGVSVYLAEIA 146
>gnl|CDD|221543 pfam12351, Fig1, Ca2+ regulator and membrane fusion protein Fig1.
During the mating process of yeast cells, two Ca2+
influx pathways become activated. The resulting
elevation of cytosolic free Ca2+ activates downstream
signaling factors that promote long term survival of
unmated cells. Fig1 is a regulator of the low affinity
Ca2+ influx system (LACS), and is also required for
efficient membrane fusion during yeast mating.
Length = 185
Score = 29.3 bits (66), Expect = 6.2
Identities = 32/135 (23%), Positives = 47/135 (34%), Gaps = 11/135 (8%)
Query: 116 IVQLMVNPFSGA--LIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFARSLQGVGSA 173
I L N G L R+GY G+CI + C + + A + +
Sbjct: 1 IFALSANSTGGLTNLQVRVGY-----FGICIS-NIPGSWICTSNISLTALADDITLSSTG 54
Query: 174 F-ADTSGLAMIADRFTEENERSQAL--GIALAFISFGCLVAPPFGGALYQFAGKEIPFLI 230
AD L +A +F++ L I L F+SF L P + K P
Sbjct: 55 SDADPLNLIELAKKFSDNVVHPYLLMAAIVLTFLSFLLLATFPGWSEIPVLPFKSRPVSR 114
Query: 231 LAFVSLLDGFMLLLV 245
+A V +L V
Sbjct: 115 VALVLSFLAVLLWGV 129
>gnl|CDD|110319 pfam01306, LacY_symp, LacY proton/sugar symporter. This family is
closely related to the sugar transporter family.
Length = 413
Score = 29.7 bits (67), Expect = 6.4
Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 13/154 (8%)
Query: 107 TGVLFASKAIVQLMVNPFSGALIDRIGYDLPM---MIGLCIMFLSTALFACGRSYGVLFF 163
TG++F+ ++ ++ P G + D++G + + GL ++F ++ G
Sbjct: 45 TGIVFSCISLFSILFQPLFGLISDKLGLRKHLLWCITGLLVLFAPFFIYVFGPLLQSNIL 104
Query: 164 ARSLQG---VGSAFADTSGLAMIADRFTEENERSQAL--GIALAFISFGCLVAPPFGGAL 218
++ G +G F+ +G + + E+ R G A F G + G L
Sbjct: 105 VGAIVGGVYLGFVFSAGAGA---IEAYIEKVSRRSNFEYGKARMFGCVGWALCASIAGIL 161
Query: 219 YQFAGKEIPFLILAFVSLLDGFMLLLVMKPVKEQ 252
+ + + +L F +L +LL+ KP K
Sbjct: 162 FSIDPQIVFWLGSGFALIL--ALLLMFAKPDKSS 193
>gnl|CDD|172710 PRK14222, PRK14222, camphor resistance protein CrcB; Provisional.
Length = 124
Score = 28.5 bits (64), Expect = 6.9
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 195 QALGIALAFISFGCLVAPPFGGALYQFAGKEIPFLILAFVSLLDGFMLLLVMK 247
+ IAL F + GCL G +Y G+ P+ LA V+++ F++ L+M+
Sbjct: 3 TLVYIAL-FGALGCLARYYLSGWVYALFGRAFPYGTLA-VNVIGAFLIGLIME 53
>gnl|CDD|145687 pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This
family is the gamma subunit of the nitrate reductase
enzyme, the gamma subunit is a b-type cytochrome that
receives electrons from the quinone pool. It then
transfers these via the iron-sulfur clusters of the beta
subunit to the molybdenum cofactor found in the alpha
subunit. The nitrate reductase enzyme, EC:1.7.99.4
catalyzes the conversion of nitrite to nitrate via the
reduction of an acceptor. The nitrate reductase enzyme
is composed of three subunits. Nitrate is the most
widely used alternative electron acceptor after oxygen.
Length = 222
Score = 29.4 bits (67), Expect = 7.3
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 309 WKIGMIWLPAFFPHVFGVVITVKLAKLYP----TYQWLMVAVGLVLEGLCCFI 357
+ +G+ L FF H+ G++I + YQ L + G + G+ I
Sbjct: 53 FHVGI--LFVFFGHLVGLLIPHSWYEALGISEHLYQLLAIVAGGIA-GILALI 102
Score = 29.4 bits (67), Expect = 7.3
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 635 WKIGMIWLPAFFPHVFGVVITVKLAKLYP----TYQWLMVAVGLVLEGLCCFI 683
+ +G+ L FF H+ G++I + YQ L + G + G+ I
Sbjct: 53 FHVGI--LFVFFGHLVGLLIPHSWYEALGISEHLYQLLAIVAGGIA-GILALI 102
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 29.6 bits (67), Expect = 7.5
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 93 KPHHREHAEGEDSA-TGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTAL 151
+++ S+ G++ + + + F+G L DR G ++I ++F+ A+
Sbjct: 58 FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLII-ALLFVIGAI 116
Query: 152 F----ACGRSYGVLFFARSLQGVGSAFADTSGLA-MIADRFTEENERSQALGIALAFISF 206
A S +L R L G+G S L M + R + I+F
Sbjct: 117 LMGLAAFALSVEMLIVGRVLLGIG--VGIASALVPMYLSEIAPKALRGALTSLYQLAITF 174
Query: 207 GCLVA 211
G LVA
Sbjct: 175 GILVA 179
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.430
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 45,945,205
Number of extensions: 4739997
Number of successful extensions: 6588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6464
Number of HSP's successfully gapped: 254
Length of query: 871
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 766
Effective length of database: 6,280,432
Effective search space: 4810810912
Effective search space used: 4810810912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.0 bits)