RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17194
(871 letters)
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 79.4 bits (194), Expect = 3e-16
Identities = 43/359 (11%), Positives = 108/359 (30%), Gaps = 12/359 (3%)
Query: 105 SATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFACGRSYGVLFFA 164
S TG++FA+ ++ L+ P G L D++G ++ + M + A F +L +
Sbjct: 43 SDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN 102
Query: 165 RSLQGVGSAFADTSGLA-----MIADRFTEENERSQALGIALAFISFGCLVAPPFGGALY 219
+ + + A + G A F G + G ++
Sbjct: 103 ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF 162
Query: 220 QFAGKEIPFLILAFVSLLDGFMLLLV----MKPVKEQLNQKKPESHSTVPIWKLFMDPYI 275
+ + +L +L + + S +LF P +
Sbjct: 163 TINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKL 222
Query: 276 AVCSGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKL 335
S ++ + + + + T + + I +
Sbjct: 223 WFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLI 282
Query: 336 YPTYQWLMVA-VGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLVD 394
+ + + F+TS +++ F + + + +
Sbjct: 283 INRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFE 342
Query: 395 VRYVSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAFMNILYAPVLIYL 453
VR+ + + LA ++AG + ++IGF ++ + + + + ++
Sbjct: 343 VRFSATIYLVCFC--FFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
Score = 48.6 bits (114), Expect = 2e-06
Identities = 42/411 (10%), Positives = 101/411 (24%), Gaps = 25/411 (6%)
Query: 371 ICGICFGMALVDTALLPTLG-YLVDVRYVSVYGSIYAIADISYSLAYAIGPIVAGGIVDA 429
F + A P +L D+ ++S S I + SL + + G + D
Sbjct: 12 FGLFFFFYFFIMGAYFPFFPIWLHDINHIS--KSDTGIIFAAISLFSLLFQPLFGLLSDK 69
Query: 430 IGFTALNFLIAFMNILYAPVLIYLKNIYDFKPFENEANILMADPPKKEYQTYTMQDRQPV 489
+G L +L ++ + ++ +
Sbjct: 70 LGLRKY-LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128
Query: 490 ANDYKNHLEYSMQETSIDENKQPAANVGTNGVSNPFKASAPSTGPPETPPFGGALYQFAG 549
+ + F + G QF
Sbjct: 129 IEKVSRRSNFEFG------------------RARMFGCVGWALGASIVGIMFTINNQFVF 170
Query: 550 KEIPFLILAFVSLLDGFMLLLVMKPVKEQLNQKKPESHSTVPIWKLFMDPYIAVCSGALL 609
L LL + S +LF P + S ++
Sbjct: 171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVI 230
Query: 610 MANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKLYPTYQWLM 669
+ + + + T + + I +
Sbjct: 231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN 290
Query: 670 VA-VGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLVDVRYVSVYG 728
+ + + F+TS +++ F + + + +VR+ +
Sbjct: 291 ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIY 350
Query: 729 SIYAIADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAFMNILYAPVLIYL 779
+ LA ++AG + ++IGF ++ + + + + ++
Sbjct: 351 LVCFC--FFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
Score = 47.5 bits (111), Expect = 5e-06
Identities = 26/219 (11%), Positives = 67/219 (30%)
Query: 29 IVWEKLQEPKSQRKLILVIVSTALLLDNMLYMVIVPIIPDYLRFIGAWGEEDQLQALNES 88
+++ + S + + + L + + + + G ++
Sbjct: 183 LLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQ 242
Query: 89 RYHTKPHHREHAEGEDSATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLS 148
+ E G + ++ + F+ +I+RIG +++ IM +
Sbjct: 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302
Query: 149 TALFACGRSYGVLFFARSLQGVGSAFADTSGLAMIADRFTEENERSQALGIALAFISFGC 208
+ S + ++L F I +F + L F
Sbjct: 303 IIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM 362
Query: 209 LVAPPFGGALYQFAGKEIPFLILAFVSLLDGFMLLLVMK 247
+ G +Y+ G + +L+L V+L + + +
Sbjct: 363 IFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401
Score = 29.7 bits (65), Expect = 1.4
Identities = 21/206 (10%), Positives = 48/206 (23%), Gaps = 1/206 (0%)
Query: 279 SGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKLYPT 338
+ P +W+ D G+I+ + + L+
Sbjct: 13 GLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGL 72
Query: 339 YQWLMVA-VGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLVDVRY 397
++L+ G+++ FI F Q +L + +
Sbjct: 73 RKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV 132
Query: 398 VSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAFMNILYAPVLIYLKNIY 457
+ A + + +A+G + G + IL + +
Sbjct: 133 SRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAP 192
Query: 458 DFKPFENEANILMADPPKKEYQTYTM 483
N + K
Sbjct: 193 SSATVANAVGANHSAFSLKLALELFR 218
Score = 29.7 bits (65), Expect = 1.4
Identities = 21/206 (10%), Positives = 48/206 (23%), Gaps = 1/206 (0%)
Query: 605 SGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFPHVFGVVITVKLAKLYPT 664
+ P +W+ D G+I+ + + L+
Sbjct: 13 GLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGL 72
Query: 665 YQWLMVA-VGLVLEGLCCFIIPFSTSYQMLMLPICGICFGMALVDTALLPTLGYLVDVRY 723
++L+ G+++ FI F Q +L + +
Sbjct: 73 RKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV 132
Query: 724 VSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTALNFLIAFMNILYAPVLIYLKNIY 783
+ A + + +A+G + G + IL + +
Sbjct: 133 SRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAP 192
Query: 784 DFKPFENEANILMADPPKKEYQTYTM 809
N + K
Sbjct: 193 SSATVANAVGANHSAFSLKLALELFR 218
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 70.1 bits (170), Expect = 4e-13
Identities = 40/375 (10%), Positives = 101/375 (26%), Gaps = 27/375 (7%)
Query: 104 DSATGVLFASKAIVQLMVNPFSGALIDRIGYDLPMMIGLCIMFLSTALFAC----GRSYG 159
G + +I G++ DR + + GL + S
Sbjct: 58 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA 117
Query: 160 VLFFARSLQGVGSAFADTSGLAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGALY 219
V+F L G + ++++ A G + F +
Sbjct: 118 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177
Query: 220 QFAGKEIPFLILAFVSLLDGFMLLLVMK------------------PVKEQLNQKKPESH 261
F + AF ++L +M+ P ++ +
Sbjct: 178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTA 237
Query: 262 STVPIWKLFMDPYIAVCSGALLMANVALAFLEPTISLWIEDNLTTDNWKIGMIWLPAFFP 321
+ + + + + + A + + + ++++ K + +
Sbjct: 238 KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA 297
Query: 322 HVFGVVITVKLAKLYPTYQWLMVAV---GLVLEGLCCFIIPFSTSYQMLMLPICGICFGM 378
+ G ++ ++ V LV + + + + + M+ + I F +
Sbjct: 298 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI 357
Query: 379 ALVDTALLPTLGYLVDVRYVSVYGSIYAIADISYSLAYAIGPIVAGGIVDAIGFTALNFL 438
+ L + + Y + G VD G+ +
Sbjct: 358 YGPVMLIGLHALELAPKKAAGTAAGFTGL--FGYLGGSVAASAIVGYTVDFFGWDGGFMV 415
Query: 439 IAFMNILYAPVLIYL 453
+ +IL +LI +
Sbjct: 416 MIGGSILAVILLIVV 430
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.430
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,233,758
Number of extensions: 152748
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 14
Length of query: 871
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 778
Effective length of database: 1,130,706
Effective search space: 879689268
Effective search space used: 879689268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (25.9 bits)