BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17199
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 40 GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAF 99
GY+PL PV C W+ LD + AS+M+L IS DRY + P+ + +T K + IA
Sbjct: 87 GYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAA 146
Query: 100 VWLLSVAMSLPLSLMYSQVIQLLHLDFG 127
W+LS + P L + ++ + ++ G
Sbjct: 147 AWVLSFILWAPAILFWQFIVGVRTVEDG 174
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 126 FGLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYL----SLKYPIK 176
+ L ++GY+PL PV C W+ LD + AS+M+L IS DRY L YP+K
Sbjct: 80 YTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVK 134
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 40 GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTR---KRVILK 96
G + + C ++ LDV+ CTASI +LC IS+DRY ++ P+ + + +RV L
Sbjct: 103 GVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALM 162
Query: 97 IAFVWLLSVAMSLPL 111
I VW+L+ A+S PL
Sbjct: 163 ITAVWVLAFAVSCPL 177
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 133 GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKF 177
G + + C ++ LDV+ CTASI +LC IS+DRY ++ P+ +
Sbjct: 103 GVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHY 147
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 49 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMS 108
C W LDVL TASI LC I++DRYL++ P ++ TR R + I VW +S +S
Sbjct: 84 CELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVS 143
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 118 VIQLLHLDFGLIMIL-GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIK 176
V+ LL + FG +++ G + C W LDVL TASI LC I++DRYL++ P +
Sbjct: 59 VVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFR 118
Query: 177 F 177
+
Sbjct: 119 Y 119
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 49 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMS 108
C W LDVL TASI LC I++DRYL++ P ++ TR R + I VW +S +S
Sbjct: 84 CELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVS 143
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 118 VIQLLHLDFGLIMIL-GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIK 176
V+ LL + FG +++ G + C W LDVL TASI LC I++DRYL++ P +
Sbjct: 59 VVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFR 118
Query: 177 F 177
+
Sbjct: 119 Y 119
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 42 FPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVW 101
+ L + C W+ +D + AS+M+L IS DRY S+ P+ + +T KR + I W
Sbjct: 78 WALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAW 137
Query: 102 LLSVAMSLPLSLMYS 116
++S + P L +
Sbjct: 138 VISFVLWAPAILFWQ 152
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 126 FGLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKF 177
F +I+ + L + C W+ +D + AS+M+L IS DRY S+ P+ +
Sbjct: 69 FTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTY 120
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 36 CCLPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVIL 95
C L + +C W +DVL TASI LC I+VDRY ++ P K+ T+ + +
Sbjct: 69 CILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARV 128
Query: 96 KIAFVWLLSVAMS-LPLSLMY 115
I VW++S S LP+ + +
Sbjct: 129 IILMVWIVSGLTSFLPIQMHW 149
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 141 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKF 177
+C W +DVL TASI LC I+VDRY ++ P K+
Sbjct: 81 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 117
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 48 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAM 107
+C W +DVL TASI LC I+VDRY ++ P K+ T+ + + I VW++S
Sbjct: 77 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 136
Query: 108 S-LPLSLMY 115
S LP+ + +
Sbjct: 137 SFLPIQMHW 145
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 141 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKF 177
+C W +DVL TASI LC I+VDRY ++ P K+
Sbjct: 77 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 113
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 48 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAM 107
+C W +DVL TASI LC I+VDRY ++ P K+ T+ + + I VW++S
Sbjct: 106 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 165
Query: 108 S-LPLSLMY 115
S LP+ + +
Sbjct: 166 SFLPIQMHW 174
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 141 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKF 177
+C W +DVL TASI LC I+VDRY ++ P K+
Sbjct: 106 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 142
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 48 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAM 107
+C W +DVL TASI LC I+VDRY ++ P K+ T+ + + I VW++S
Sbjct: 105 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 164
Query: 108 S-LPLSLMY 115
S LP+ + +
Sbjct: 165 SFLPIQMHW 173
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 141 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKF 177
+C W +DVL TASI LC I+VDRY ++ P K+
Sbjct: 105 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 141
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 48 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAM 107
+C W +DVL TASI LC I+VDRY ++ P K+ T+ + + I VW++S
Sbjct: 82 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 141
Query: 108 S-LPLSLMY 115
S LP+ + +
Sbjct: 142 SFLPIQMHW 150
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 126 FGLIMIL-GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKF 177
FG IL + +C W +DVL TASI LC I+VDRY ++ P K+
Sbjct: 66 FGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 118
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 48 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAM 107
+C W +DVL TASI LC I+VDRY ++ P K+ T+ + + I VW++S
Sbjct: 112 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 171
Query: 108 S-LPLSLMY 115
S LP+ + +
Sbjct: 172 SFLPIQMHW 180
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 141 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKF 177
+C W +DVL TASI LC I+VDRY ++ P K+
Sbjct: 112 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 148
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 48 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAM 107
+C W +DVL TASI LC I+VDRY ++ P K+ T+ + + I VW++S
Sbjct: 113 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 172
Query: 108 S-LPLSLMY 115
S LP+ + +
Sbjct: 173 SFLPIQMHW 181
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 141 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKF 177
+C W +DVL TASI LC I+VDRY ++ P K+
Sbjct: 113 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 149
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 48 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAM 107
+C W +DVL TASI LC I+VDRY ++ P K+ T+ + + I VW++S
Sbjct: 254 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 313
Query: 108 S-LPLSLMY 115
S LP+ + +
Sbjct: 314 SFLPIQMHW 322
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 126 FGLIMIL-GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKF 177
FG IL + +C W +DVL TASI LC I+VDRY ++ P K+
Sbjct: 238 FGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 290
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 48 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAM 107
+C W +DVL TASI LC I+VDRY ++ P K+ T+ + + I VW++S
Sbjct: 113 WCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 172
Query: 108 S-LPLSLMY 115
S LP+ + +
Sbjct: 173 SFLPIQMHW 181
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 126 FGLIMIL-GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKF 177
FG IL + +C W +DVL TASI LC I+VDRY ++ P K+
Sbjct: 97 FGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKY 149
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 38 LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKI 97
L G +P + C I +D SI LCT+SVDRY+++ +P+K +T + +
Sbjct: 78 LMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVN 137
Query: 98 AFVWLLSVAMSLPLSLMYSQVIQLLHLD 125
W+LS A+ LP+ M + + +D
Sbjct: 138 VCNWILSSAIGLPVMFMATTKYRQGSID 165
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 131 ILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIK 176
++G +P + C I +D SI LCT+SVDRY+++ +P+K
Sbjct: 78 LMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVK 123
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 49 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMS 108
CL W+ +D + TASI + + +DRY S++ P+++ + +T+ R I W LS
Sbjct: 81 CLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWV 140
Query: 109 LPL 111
+P+
Sbjct: 141 IPI 143
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 128 LIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRY 180
L +++ + L CL W+ +D + TASI + + +DRY S++ P+++ +Y
Sbjct: 67 LYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKY 119
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 40 GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAF 99
G++P C T I +D S L +SVDRY+++ +PI+ +T +
Sbjct: 188 GFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVA 247
Query: 100 VWLLSVAMSLPLSLMYSQVIQLLHLD 125
+W L+ + +P+++M S ++ ++
Sbjct: 248 IWALASVVGVPVAIMGSAQVEDEEIE 273
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 112 SLMYSQVIQLLHLDF-GLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLS 170
+L + + LL L F G ++LG++P C T I +D S L +SVDRY++
Sbjct: 166 NLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVA 225
Query: 171 LKYPIK 176
+ +PI+
Sbjct: 226 ICHPIR 231
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 49 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMS 108
CL C ++ +SI L I++DRY++++ P+++ T R IA W+LS A+
Sbjct: 77 CLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 136
Query: 109 L 109
L
Sbjct: 137 L 137
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 142 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFG 178
CL C ++ +SI L I++DRY++++ P+++
Sbjct: 77 CLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYN 113
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 49 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMS 108
CL C ++ +SI L I++DRY++++ P+++ T R IA W+LS A+
Sbjct: 77 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 136
Query: 109 L 109
L
Sbjct: 137 L 137
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 142 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFG 178
CL C ++ +SI L I++DRY++++ P+++
Sbjct: 77 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYN 113
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 49 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMS 108
CL C ++ +SI L I++DRY+++ P+++ T R IA W+LS A+
Sbjct: 77 CLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIG 136
Query: 109 LPLSLMYSQVIQ 120
L L ++ Q
Sbjct: 137 LTPMLGWNNCGQ 148
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 142 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFG 178
CL C ++ +SI L I++DRY+++ P+++
Sbjct: 77 CLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYN 113
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 58 LFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSV 105
+F SIM + IS+DRY + P+ + + +R + I FVWL SV
Sbjct: 117 IFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSV 164
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 58 LFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSV 105
+F SIM + IS+DRY + P+ + + +R + I FVWL SV
Sbjct: 116 IFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSV 163
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 49 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMS 108
CL C ++ +SI L I++DRY++++ P+++ T R IA W+LS A+
Sbjct: 102 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 161
Query: 109 L 109
L
Sbjct: 162 L 162
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 142 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFG 178
CL C ++ +SI L I++DRY++++ P+++
Sbjct: 102 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYN 138
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 49 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMS 108
CL C ++ +SI L I++DRY++++ P+++ T R IA W+LS A+
Sbjct: 92 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 151
Query: 109 L 109
L
Sbjct: 152 L 152
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 142 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFG 178
CL C ++ +SI L I++DRY++++ P+++
Sbjct: 92 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYN 128
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 62 ASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMSLPLSLMYSQVIQL 121
ASI+ + IS+DR+L++ YP++ +T R +W L++A +PL L+ Q IQ+
Sbjct: 106 ASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPL-LLKEQTIQV 164
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 36.2 bits (82), Expect = 0.011, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 61 TASIMHLCTISVDRYLSLKYPIKFGRNKTRKR 92
T+SI+HLC IS+DRY S+ I++ +T +R
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
Score = 32.3 bits (72), Expect = 0.15, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 154 TASIMHLCTISVDRYLSLKYPIKF 177
T+SI+HLC IS+DRY S+ I++
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEY 24
>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 34.3 bits (77), Expect = 0.040, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 62 ASIMHLCTISVDRYLSLKYPIKFGRNKTRKR 92
+SI+HLC IS+DRY S+ I++ +T +R
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
Score = 30.4 bits (67), Expect = 0.55, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 155 ASIMHLCTISVDRYLSLKYPIKF 177
+SI+HLC IS+DRY S+ I++
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEY 24
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 38 LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPI---KFGRNKTRKRVI 94
L GYF P C L ++ L ++++RY+ + P+ +FG N I
Sbjct: 100 LHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGEN----HAI 155
Query: 95 LKIAFVWLLSVAMSLPLSLMYSQVI 119
+ +AF W++++A + P + +S+ I
Sbjct: 156 MGVAFTWVMALACAAPPLVGWSRYI 180
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 38 LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPI---KFGRNKTRKRVI 94
L GYF P C L ++ L ++++RY+ + P+ +FG N I
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGEN----HAI 155
Query: 95 LKIAFVWLLSVAMSLPLSLMYSQVI 119
+ +AF W++++A + P + +S+ I
Sbjct: 156 MGVAFTWVMALACAAPPLVGWSRYI 180
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 33.1 bits (74), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 38 LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPI---KFGRNKTRKRVI 94
L GYF P C L ++ L ++++RY+ + P+ +FG N I
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGEN----HAI 155
Query: 95 LKIAFVWLLSVAMSLPLSLMYSQVI 119
+ +AF W++++A + P + +S+ I
Sbjct: 156 MGVAFTWVMALACAAPPLVGWSRYI 180
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 33.1 bits (74), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 38 LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPI---KFGRNKTRKRVI 94
L GYF P C L ++ L ++++RY+ + P+ +FG N I
Sbjct: 99 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGEN----HAI 154
Query: 95 LKIAFVWLLSVAMSLPLSLMYSQVI 119
+ +AF W++++A + P + +S+ I
Sbjct: 155 MGVAFTWVMALACAAPPLVGWSRYI 179
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 38 LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPI---KFGRNKTRKRVI 94
L GYF P C L ++ L ++++RY+ + P+ +FG N I
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGEN----HAI 155
Query: 95 LKIAFVWLLSVAMSLPLSLMYSQVI 119
+ +AF W++++A + P + +S+ I
Sbjct: 156 MGVAFTWVMALACAAPPLVGWSRYI 180
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 38 LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPI---KFGRNKTRKRVI 94
L GYF P C L ++ L ++++RY+ + P+ +FG N I
Sbjct: 99 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGEN----HAI 154
Query: 95 LKIAFVWLLSVAMSLPLSLMYSQVI 119
+ +AF W++++A + P + +S+ I
Sbjct: 155 MGVAFTWVMALACAAPPLVGWSRYI 179
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 60 CT-ASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMSLPL 111
CT A+ +++ ++SV RYL++ +P K +R R I+ +WL S +++P+
Sbjct: 120 CTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPM 172
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 42 FPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVW 101
+P + C + +D SI L +SVDRY+++ +P+K +T + L +W
Sbjct: 79 WPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIW 138
Query: 102 LLSVAMSLPLSLMYSQVIQLLHLDFGLIMILGYFPLPPVY--CLTWICL 148
+L+ + +P+ +M + G ++ + FP P Y +T IC+
Sbjct: 139 VLASGVGVPIMVM-----AVTQPRDGAVVCMLQFPSPSWYWDTVTKICV 182
>pdb|1HO9|A Chain A, Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32
Residue Peptide From The Alpha 2a Adrenergic Receptor
pdb|1HOD|A Chain A, Nmr Structure Of D130i Mutant T3-I2, A 32 Residue
Peptide From The Alpha 2a Adrenergic Receptor
Length = 32
Score = 30.0 bits (66), Expect = 0.85, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 62 ASIMHLCTISVDRYLSLKYPIKFGRNKTRKR 92
+SI+HLC IS+ RY S+ I++ +T +R
Sbjct: 2 SSIVHLCAISLIRYWSITQAIEYNLKRTPRR 32
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 62 ASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFV--WLLSVAMSLP 110
+ I+ L ISVDRYL++ + R T+KR ++K + W LS+ +SLP
Sbjct: 95 SGILLLACISVDRYLAIVHAT---RTLTQKRHLVKFVCLGCWGLSMNLSLP 142
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 36 CCLPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVIL 95
C +FP+ V+ ASI + ++ DRY+++ +P++ + T +V+
Sbjct: 105 CKFHNFFPIAAVF-------------ASIYSMTAVAFDRYMAIIHPLQPRLSATATKVV- 150
Query: 96 KIAFVWLLSVAMSLP 110
I +W+L++ ++ P
Sbjct: 151 -ICVIWVLALLLAFP 164
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 129 IMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIK 176
+ ++ +P V C + +D SI L +SVDRY+++ +P+K
Sbjct: 81 VYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVK 128
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 38 LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKT-RKRVILK 96
L +P V C + +D SI L +SVDRY+++ +P+K +T K I+
Sbjct: 83 LMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIIN 142
Query: 97 IAFVWLLSVAMSLP 110
I +WLLS ++ +
Sbjct: 143 IC-IWLLSSSVGIS 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.337 0.152 0.527
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,749,604
Number of Sequences: 62578
Number of extensions: 157735
Number of successful extensions: 361
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 85
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 48 (23.1 bits)