Query psy17199
Match_columns 182
No_of_seqs 148 out of 1778
Neff 9.6
Searched_HMMs 46136
Date Sat Aug 17 00:23:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.8 1.8E-18 4E-23 135.7 7.2 106 13-120 69-177 (423)
2 KOG4220|consensus 99.7 1.7E-18 3.7E-23 136.0 -0.3 104 13-116 64-170 (503)
3 PHA03234 DNA packaging protein 99.7 1E-16 2.3E-21 127.3 9.4 102 12-116 67-170 (338)
4 PHA02834 chemokine receptor-li 99.6 3.5E-16 7.7E-21 123.7 5.2 102 13-116 61-164 (323)
5 PHA02638 CC chemokine receptor 99.6 7.4E-16 1.6E-20 125.6 6.7 104 13-117 131-236 (417)
6 PHA03235 DNA packaging protein 99.6 1.2E-14 2.6E-19 118.2 8.2 100 13-114 68-169 (409)
7 PF00001 7tm_1: 7 transmembran 99.6 1.2E-14 2.7E-19 109.4 7.7 108 12-119 17-127 (257)
8 PHA03087 G protein-coupled che 99.5 1.2E-13 2.6E-18 109.6 10.0 105 12-117 72-179 (335)
9 KOG4220|consensus 99.1 4.8E-11 1E-15 94.6 3.6 83 86-182 60-143 (503)
10 KOG2087|consensus 98.9 3.3E-09 7.1E-14 83.1 6.2 107 11-118 56-173 (363)
11 PHA03234 DNA packaging protein 98.8 3E-09 6.6E-14 84.7 2.3 73 90-178 69-141 (338)
12 KOG4219|consensus 98.6 3.9E-09 8.5E-14 83.7 -2.6 98 67-178 45-144 (423)
13 PF10320 7TM_GPCR_Srsx: Serpen 98.6 3.9E-07 8.5E-12 70.0 8.2 94 12-105 23-117 (257)
14 PHA02834 chemokine receptor-li 98.5 5E-08 1.1E-12 77.3 2.5 74 90-179 62-135 (323)
15 PHA02638 CC chemokine receptor 98.3 2E-07 4.4E-12 76.3 1.1 74 91-180 133-206 (417)
16 PF00001 7tm_1: 7 transmembran 98.3 2.6E-08 5.6E-13 74.8 -4.2 77 91-181 20-96 (257)
17 PHA03235 DNA packaging protein 98.1 8.9E-07 1.9E-11 72.4 1.6 73 90-178 69-141 (409)
18 PHA03087 G protein-coupled che 98.1 1.3E-06 2.8E-11 69.4 1.0 76 91-181 75-150 (335)
19 PF10328 7TM_GPCR_Srx: Serpent 97.8 0.00019 4.1E-09 55.6 9.0 100 13-113 27-131 (274)
20 PF10324 7TM_GPCR_Srw: Serpent 97.8 0.00022 4.7E-09 56.3 9.0 105 12-116 29-147 (318)
21 PF11710 Git3: G protein-coupl 97.2 0.0034 7.4E-08 46.5 8.3 68 14-81 36-106 (201)
22 PF10323 7TM_GPCR_Srv: Serpent 96.9 0.002 4.3E-08 50.2 5.1 99 15-113 34-140 (283)
23 PF10320 7TM_GPCR_Srsx: Serpen 96.8 0.00035 7.6E-09 53.7 0.4 73 93-181 28-100 (257)
24 PF03402 V1R: Vomeronasal orga 95.6 0.019 4.1E-07 44.3 4.3 96 13-110 10-112 (265)
25 PF05462 Dicty_CAR: Slime mold 94.3 0.32 6.9E-06 38.4 7.9 96 12-112 39-134 (303)
26 KOG2087|consensus 94.1 0.0019 4.1E-08 51.3 -4.8 86 88-180 57-142 (363)
27 PF10317 7TM_GPCR_Srd: Serpent 81.8 20 0.00042 28.0 9.3 91 14-109 34-137 (292)
28 PF02175 7TM_GPCR_Srb: Serpent 79.0 4.2 9.2E-05 30.8 4.4 47 41-87 77-123 (236)
29 PF10328 7TM_GPCR_Srx: Serpent 78.7 0.98 2.1E-05 34.8 1.0 37 146-182 71-107 (274)
30 PF00002 7tm_2: 7 transmembran 74.2 1 2.2E-05 33.9 0.0 94 15-112 36-131 (242)
31 PF10316 7TM_GPCR_Srbc: Serpen 73.4 5.6 0.00012 31.0 3.9 71 21-91 47-123 (273)
32 PF02101 Ocular_alb: Ocular al 73.1 24 0.00053 28.9 7.4 88 16-110 69-171 (405)
33 PF10321 7TM_GPCR_Srt: Serpent 70.2 20 0.00044 28.5 6.4 83 15-100 68-157 (313)
34 PF02118 Srg: Srg family chemo 69.3 15 0.00032 28.1 5.5 42 46-87 78-119 (275)
35 PF03383 Serpentine_r_xa: Caen 67.5 20 0.00043 25.4 5.2 53 57-109 52-104 (153)
36 PF10292 7TM_GPCR_Srab: Serpen 64.8 27 0.00057 27.8 6.2 44 44-87 91-134 (324)
37 PF05296 TAS2R: Mammalian tast 51.5 1.2E+02 0.0026 23.9 8.4 73 11-83 41-116 (303)
38 PF02175 7TM_GPCR_Srb: Serpent 43.8 2.6 5.7E-05 31.9 -2.5 46 136-181 79-124 (236)
39 PF11710 Git3: G protein-coupl 42.4 1.7 3.8E-05 32.1 -3.6 71 90-174 36-106 (201)
40 PF10323 7TM_GPCR_Srv: Serpent 42.3 5.3 0.00011 31.1 -1.1 36 144-179 77-113 (283)
41 PF10318 7TM_GPCR_Srh: Serpent 39.1 76 0.0016 24.6 5.0 91 20-113 49-147 (302)
42 PF10326 7TM_GPCR_Str: Serpent 38.0 57 0.0012 25.4 4.1 70 15-84 35-117 (307)
43 KOG4193|consensus 27.6 1.7E+02 0.0038 25.7 5.6 60 48-110 385-444 (610)
44 PF05462 Dicty_CAR: Slime mold 27.0 40 0.00086 26.7 1.5 38 138-175 71-108 (303)
45 PF04789 DUF621: Protein of un 24.2 3.7E+02 0.0079 21.3 7.4 96 15-111 50-152 (305)
46 PF10326 7TM_GPCR_Str: Serpent 21.7 1.1E+02 0.0025 23.7 3.2 44 133-176 73-116 (307)
47 PF03125 Sre: C. elegans Sre G 21.6 1.1E+02 0.0023 24.8 3.1 36 52-87 126-161 (365)
48 PF06681 DUF1182: Protein of u 21.0 3.7E+02 0.0081 20.3 5.7 39 45-83 113-151 (226)
No 1
>KOG4219|consensus
Probab=99.75 E-value=1.8e-18 Score=135.66 Aligned_cols=106 Identities=19% Similarity=0.324 Sum_probs=96.1
Q ss_pred chhhHhHHHHHHHHHHHHHhhhhhh---ccccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeeccccccccee
Q psy17199 13 HLFIIFTHLQLLHFLLCHFQVPLCC---LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKT 89 (182)
Q Consensus 13 ~~n~~l~~La~~Dl~~~~~~~p~~~---~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~t 89 (182)
-+|+|+.|||+||+..+.+..|+.. +...|.+|+..|++..++....+.+|+++++++|+|||.||.||++.+ .+
T Consensus 69 vtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s 146 (423)
T KOG4219|consen 69 VTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PS 146 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CC
Confidence 4799999999999999999999974 367899999999999999999999999999999999999999999864 88
Q ss_pred cceeeeeehHhHHHHHHHHhhhHhhccceee
Q psy17199 90 RKRVILKIAFVWLLSVAMSLPLSLMYSQVIQ 120 (182)
Q Consensus 90 ~~~~~~~l~~~wi~s~~~~~p~~~~~~~~~~ 120 (182)
++...+.+..+|+++++++.|..+.....+.
T Consensus 147 ~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~ 177 (423)
T KOG4219|consen 147 RRSSKIIILLIWALALLLALPQLLYSSVEEL 177 (423)
T ss_pred CcceeehhHHHHHHHHHHhccceeeeeeEEe
Confidence 8888999999999999999998777665443
No 2
>KOG4220|consensus
Probab=99.70 E-value=1.7e-18 Score=136.03 Aligned_cols=104 Identities=33% Similarity=0.592 Sum_probs=97.1
Q ss_pred chhhHhHHHHHHHHHHHHHhhhhhh---ccccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeeccccccccee
Q psy17199 13 HLFIIFTHLQLLHFLLCHFQVPLCC---LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKT 89 (182)
Q Consensus 13 ~~n~~l~~La~~Dl~~~~~~~p~~~---~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~t 89 (182)
..|||+.+||+||++.+.+.+|... +.|.|++|...|++...+.++.-.+|++++..|+.|||..+.+|+.|+.++|
T Consensus 64 VnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRT 143 (503)
T KOG4220|consen 64 VNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRT 143 (503)
T ss_pred ecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceeeccccccccccc
Confidence 3699999999999999999999974 3799999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeehHhHHHHHHHHhhhHhhcc
Q psy17199 90 RKRVILKIAFVWLLSVAMSLPLSLMYS 116 (182)
Q Consensus 90 ~~~~~~~l~~~wi~s~~~~~p~~~~~~ 116 (182)
.+++-.+++++|++|+++..|-+..|.
T Consensus 144 tkrA~~MI~~AW~iSfiLWaPaIl~Wq 170 (503)
T KOG4220|consen 144 TKRAGLMIGAAWVLSFVLWAPAILFWQ 170 (503)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999888766654
No 3
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.69 E-value=1e-16 Score=127.33 Aligned_cols=102 Identities=22% Similarity=0.285 Sum_probs=83.3
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhhhc--cccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeeccccccccee
Q psy17199 12 DHLFIIFTHLQLLHFLLCHFQVPLCCL--PGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKT 89 (182)
Q Consensus 12 ~~~n~~l~~La~~Dl~~~~~~~p~~~~--~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~t 89 (182)
+..|+|+.|||+||+++++ ..|.... .++|++|+..|++..++......+|++++++||+|||.++++|.+++. +
T Consensus 67 t~tn~fi~NLAvaDLL~~l-~lp~~~~~~~~~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~-~- 143 (338)
T PHA03234 67 NATSFYLITLFASDFLHML-CVFFLTLNREALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK-K- 143 (338)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh-h-
Confidence 4689999999999999987 5666544 457999999999999999999999999999999999999999987643 2
Q ss_pred cceeeeeehHhHHHHHHHHhhhHhhcc
Q psy17199 90 RKRVILKIAFVWLLSVAMSLPLSLMYS 116 (182)
Q Consensus 90 ~~~~~~~l~~~wi~s~~~~~p~~~~~~ 116 (182)
+++....+++.|+.+.+.++|......
T Consensus 144 ~~~~~~~i~~~Wi~s~l~~~P~l~~~~ 170 (338)
T PHA03234 144 NNHIGRNIGILFLASAMCAIPAALFVK 170 (338)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHhHeee
Confidence 233333455669999998999865443
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.62 E-value=3.5e-16 Score=123.67 Aligned_cols=102 Identities=18% Similarity=0.312 Sum_probs=85.8
Q ss_pred chhhHhHHHHHHHHHHHHHhhhhhhc--cccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccceec
Q psy17199 13 HLFIIFTHLQLLHFLLCHFQVPLCCL--PGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTR 90 (182)
Q Consensus 13 ~~n~~l~~La~~Dl~~~~~~~p~~~~--~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~t~ 90 (182)
..|+++.|||++|++. ...+|..+. .++|.+|+..|++..+.......+|+++++++++|||.+|++|++++. ++.
T Consensus 61 ~~n~~i~nLAiaDll~-~~~lP~~i~~~~~~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~ 138 (323)
T PHA02834 61 VVDVYLFNIAMSDLML-VFSFPFIIHNDLNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSI 138 (323)
T ss_pred hhhhhhHHHHHHHHHH-HHHHHHHHHHHcCCcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccC-Ccc
Confidence 4799999999999987 447888654 357999999999999988888889999999999999999999998644 345
Q ss_pred ceeeeeehHhHHHHHHHHhhhHhhcc
Q psy17199 91 KRVILKIAFVWLLSVAMSLPLSLMYS 116 (182)
Q Consensus 91 ~~~~~~l~~~wi~s~~~~~p~~~~~~ 116 (182)
+++...++.+|+.+.+.+.|+...+.
T Consensus 139 ~~~~~~i~~iWi~s~l~~~P~~~~~~ 164 (323)
T PHA02834 139 SLSVLLSVAAWVCSVILSMPAMVLYY 164 (323)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 66666778999999999998876543
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.62 E-value=7.4e-16 Score=125.59 Aligned_cols=104 Identities=17% Similarity=0.335 Sum_probs=92.3
Q ss_pred chhhHhHHHHHHHHHHHHHhhhhhhc--cccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccceec
Q psy17199 13 HLFIIFTHLQLLHFLLCHFQVPLCCL--PGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTR 90 (182)
Q Consensus 13 ~~n~~l~~La~~Dl~~~~~~~p~~~~--~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~t~ 90 (182)
..|+++.|||++|++... ..|+++. .++|.+|+..|++..++......++++.++++++|||++|++|.++++.+++
T Consensus 131 ~t~i~llnLAisDLl~~l-~lPf~i~~~~~~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~ 209 (417)
T PHA02638 131 ITDIYIFNLAISDLIFVI-DFPFIIYNEFDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTF 209 (417)
T ss_pred HhHHHHHHHHHHHHHHHH-HHHHHHHHHhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecH
Confidence 478999999999998865 8898764 4679999999999999999999999999999999999999999998777888
Q ss_pred ceeeeeehHhHHHHHHHHhhhHhhccc
Q psy17199 91 KRVILKIAFVWLLSVAMSLPLSLMYSQ 117 (182)
Q Consensus 91 ~~~~~~l~~~wi~s~~~~~p~~~~~~~ 117 (182)
++....++.+|+.+.+.++|+.+....
T Consensus 210 ~~~~i~~~~iW~~s~l~slP~~~~~~~ 236 (417)
T PHA02638 210 NIGIILCIISWILSLIITSPAYFIFEA 236 (417)
T ss_pred hhhHhhHhHHHHHHHHHHHHHHHHhhc
Confidence 888888899999999999998776543
No 6
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.55 E-value=1.2e-14 Score=118.15 Aligned_cols=100 Identities=21% Similarity=0.286 Sum_probs=84.5
Q ss_pred chhhHhHHHHHHHHHHHHHhhhhhhccccccc--cccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccceec
Q psy17199 13 HLFIIFTHLQLLHFLLCHFQVPLCCLPGYFPL--PPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTR 90 (182)
Q Consensus 13 ~~n~~l~~La~~Dl~~~~~~~p~~~~~~~~~~--~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~t~ 90 (182)
..|+|+.|||++|++.. ..+|+.+..+.|.. ++..|++..++......+|++++++|++|||.+|++|.++ +..++
T Consensus 68 ~~~~~I~NLAvsDLl~l-~~lP~~i~~~~~~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~-~~~~~ 145 (409)
T PHA03235 68 TPTLYMTNLYLANLLTV-FVLPFIMLSNQGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRA-RSSAY 145 (409)
T ss_pred ccHHHHHHHHHHHHHHH-HHHHHHHHhcCccccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhc-cCccc
Confidence 45899999999999874 58898876555544 4689999999999999999999999999999999999865 34468
Q ss_pred ceeeeeehHhHHHHHHHHhhhHhh
Q psy17199 91 KRVILKIAFVWLLSVAMSLPLSLM 114 (182)
Q Consensus 91 ~~~~~~l~~~wi~s~~~~~p~~~~ 114 (182)
+++...++++|+.+++.++|..+.
T Consensus 146 ~~a~~ii~~iWi~sll~s~P~~~~ 169 (409)
T PHA03235 146 RSTYKILGLTWFASLICSGPAPVY 169 (409)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999986554
No 7
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.55 E-value=1.2e-14 Score=109.38 Aligned_cols=108 Identities=25% Similarity=0.439 Sum_probs=96.6
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhhhc---cccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccce
Q psy17199 12 DHLFIIFTHLQLLHFLLCHFQVPLCCL---PGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNK 88 (182)
Q Consensus 12 ~~~n~~l~~La~~Dl~~~~~~~p~~~~---~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~ 88 (182)
+..|+++.|||++|++.+....|.... .+.|..++..|++..++......++.++++++++|||.++++|.++++..
T Consensus 17 ~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~ 96 (257)
T PF00001_consen 17 TPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYLAICHPLRYRRIR 96 (257)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHTHHHHS
T ss_pred ChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 567999999999999999988777643 35789999999999999999999999999999999999999999999999
Q ss_pred ecceeeeeehHhHHHHHHHHhhhHhhcccee
Q psy17199 89 TRKRVILKIAFVWLLSVAMSLPLSLMYSQVI 119 (182)
Q Consensus 89 t~~~~~~~l~~~wi~s~~~~~p~~~~~~~~~ 119 (182)
+++++...+..+|+.+.+...|+.+......
T Consensus 97 ~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~ 127 (257)
T PF00001_consen 97 TRRRARIIIILIWIISFLISLPPLFFSWVYF 127 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999877755433
No 8
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.51 E-value=1.2e-13 Score=109.60 Aligned_cols=105 Identities=19% Similarity=0.314 Sum_probs=92.0
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhhhc---cccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccce
Q psy17199 12 DHLFIIFTHLQLLHFLLCHFQVPLCCL---PGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNK 88 (182)
Q Consensus 12 ~~~n~~l~~La~~Dl~~~~~~~p~~~~---~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~ 88 (182)
...|+++.|||++|++.+. ..|.... .++|.+++..|+...++......+|+++++++++|||.++++|++++++.
T Consensus 72 ~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~ 150 (335)
T PHA03087 72 TPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKIN 150 (335)
T ss_pred CchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Confidence 5679999999999998776 5666542 46788999999999999999999999999999999999999999998889
Q ss_pred ecceeeeeehHhHHHHHHHHhhhHhhccc
Q psy17199 89 TRKRVILKIAFVWLLSVAMSLPLSLMYSQ 117 (182)
Q Consensus 89 t~~~~~~~l~~~wi~s~~~~~p~~~~~~~ 117 (182)
+++++...+.++|+.+.+...|+...+..
T Consensus 151 ~~~~~~~~~~~iWl~~~~~~~p~~~~~~~ 179 (335)
T PHA03087 151 TVKYGYIVSLVIWIISIIETTPILFVYTT 179 (335)
T ss_pred chhhhHHHHHHHHHHHHHHhccHhheeee
Confidence 99999999999999999988887666543
No 9
>KOG4220|consensus
Probab=99.11 E-value=4.8e-11 Score=94.57 Aligned_cols=83 Identities=33% Similarity=0.595 Sum_probs=73.7
Q ss_pred cceecc-eeeeeehHhHHHHHHHHhhhHhhccceeeeeeeceeEEEEeeeccccchhhHHHHHHHHHHhhhccceeeEEE
Q psy17199 86 RNKTRK-RVILKIAFVWLLSVAMSLPLSLMYSQVIQLLHLDFGLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTIS 164 (182)
Q Consensus 86 ~~~t~~-~~~~~l~~~wi~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~si~~l~~is 164 (182)
...|.+ -.+++++++|+.-..+++|....+. ..|.|++|...|+++..++++...+|++++..|+
T Consensus 60 qLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~--------------lmg~W~LG~~~CdlWLalDYvaSNASVmNLLiIS 125 (503)
T KOG4220|consen 60 QLQTVNNYFLFSLACADLIIGAFSMNLYTTYT--------------LMGYWPLGPLVCDLWLALDYVASNASVMNLLIIS 125 (503)
T ss_pred eeeeecceeehHHHHhhhhhheeechHHHHHH--------------HHcccccchHHHHHHHHHHHHhhhhhhhhhheee
Confidence 334443 4577899999999999999887777 7899999999999999999999999999999999
Q ss_pred eeeeeeeecccccccCCC
Q psy17199 165 VDRYLSLKYPIKFGRYFP 182 (182)
Q Consensus 165 i~Ry~ai~~pl~~~~~~~ 182 (182)
.|||.+|.|||+|+.++|
T Consensus 126 FDRYFsVTrPLtYrakRT 143 (503)
T KOG4220|consen 126 FDRYFSVTRPLTYRAKRT 143 (503)
T ss_pred eecceeeccccccccccc
Confidence 999999999999998875
No 10
>KOG2087|consensus
Probab=98.90 E-value=3.3e-09 Score=83.08 Aligned_cols=107 Identities=20% Similarity=0.360 Sum_probs=87.1
Q ss_pred ecchhhHhHHHHHHHHHHHHHhhhhhhc----cc-------cccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheee
Q psy17199 11 IDHLFIIFTHLQLLHFLLCHFQVPLCCL----PG-------YFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLK 79 (182)
Q Consensus 11 ~~~~n~~l~~La~~Dl~~~~~~~p~~~~----~~-------~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~ 79 (182)
.+-...++.|||.+|++++......... .+ .|..| ..|+.-+++..+.--.|++.++.+++||+..|+
T Consensus 56 ~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg-~gC~~aGflavFASElSv~~LT~itlEr~l~i~ 134 (363)
T KOG2087|consen 56 LNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTG-LGCPVAGFLAVFASELSVFLLTLITLERWLSIT 134 (363)
T ss_pred ccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 4556789999999999998865555432 12 25444 669999999999999999999999999999999
Q ss_pred cccccccceecceeeeeehHhHHHHHHHHhhhHhhccce
Q psy17199 80 YPIKFGRNKTRKRVILKIAFVWLLSVAMSLPLSLMYSQV 118 (182)
Q Consensus 80 ~pl~~~~~~t~~~~~~~l~~~wi~s~~~~~p~~~~~~~~ 118 (182)
+|++..++...+++...+...|+.+.+....|.++.+.+
T Consensus 135 ~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y 173 (363)
T KOG2087|consen 135 YPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSY 173 (363)
T ss_pred ccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 999987766667688889999999999998877775543
No 11
>PHA03234 DNA packaging protein UL33; Provisional
Probab=98.77 E-value=3e-09 Score=84.72 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=60.7
Q ss_pred cceeeeeehHhHHHHHHHHhhhHhhccceeeeeeeceeEEEEeeeccccchhhHHHHHHHHHHhhhccceeeEEEeeeee
Q psy17199 90 RKRVILKIAFVWLLSVAMSLPLSLMYSQVIQLLHLDFGLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYL 169 (182)
Q Consensus 90 ~~~~~~~l~~~wi~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~si~~l~~isi~Ry~ 169 (182)
....+.+++++|++..+ .+|+..... .+.|++|+..|++...+.....++|++++++||+|||+
T Consensus 69 tn~fi~NLAvaDLL~~l-~lp~~~~~~---------------~~~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~ 132 (338)
T PHA03234 69 TSFYLITLFASDFLHML-CVFFLTLNR---------------EALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYK 132 (338)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHH---------------hCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHe
Confidence 34478899999988865 566554432 24699999999999999999999999999999999999
Q ss_pred eeecccccc
Q psy17199 170 SLKYPIKFG 178 (182)
Q Consensus 170 ai~~pl~~~ 178 (182)
||.||.+++
T Consensus 133 aIv~p~~~~ 141 (338)
T PHA03234 133 TLHRRKKND 141 (338)
T ss_pred eeechhhhh
Confidence 999998753
No 12
>KOG4219|consensus
Probab=98.56 E-value=3.9e-09 Score=83.67 Aligned_cols=98 Identities=19% Similarity=0.309 Sum_probs=77.0
Q ss_pred HHHHHHhhhheeeccc-ccccceec-ceeeeeehHhHHHHHHHHhhhHhhccceeeeeeeceeEEEEeeeccccchhhHH
Q psy17199 67 LCTISVDRYLSLKYPI-KFGRNKTR-KRVILKIAFVWLLSVAMSLPLSLMYSQVIQLLHLDFGLIMILGYFPLPPVYCLT 144 (182)
Q Consensus 67 l~~iav~Ry~ai~~pl-~~~~~~t~-~~~~~~l~~~wi~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 144 (182)
++++|+--...+.+-. .+++-+|. +-.+.+++.+|+...++..+.-+... ...+|.+|..+|++
T Consensus 45 l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~ya--------------l~~~W~~G~f~C~f 110 (423)
T KOG4219|consen 45 LVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYA--------------LHQEWYFGSFYCRF 110 (423)
T ss_pred HHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHH--------------HHhccccccceeee
Confidence 4444554444444433 33344444 44577899999999999999877776 56789999999999
Q ss_pred HHHHHHHHhhhccceeeEEEeeeeeeeecccccc
Q psy17199 145 WICLDVLFCTASIMHLCTISVDRYLSLKYPIKFG 178 (182)
Q Consensus 145 ~~~~~~~~~~~si~~l~~isi~Ry~ai~~pl~~~ 178 (182)
..+....-..+|+++++++|+|||.||.||++.+
T Consensus 111 ~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r 144 (423)
T KOG4219|consen 111 VNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR 144 (423)
T ss_pred ccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC
Confidence 9999999999999999999999999999999754
No 13
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.55 E-value=3.9e-07 Score=69.99 Aligned_cols=94 Identities=18% Similarity=0.341 Sum_probs=72.5
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhhhc-cccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccceec
Q psy17199 12 DHLFIIFTHLQLLHFLLCHFQVPLCCL-PGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTR 90 (182)
Q Consensus 12 ~~~n~~l~~La~~Dl~~~~~~~p~~~~-~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~t~ 90 (182)
++.++++..+|++|++.....+|.... -+........|-...+.......+....+.++++||+.|++.|++|+...+.
T Consensus 23 s~~~~li~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV~~P~~Y~~~~~~ 102 (257)
T PF10320_consen 23 SPCYILICILCFADLICLLGTLPFMLFLFRDHQITRSECFWQIFFYIFFQCAQSVIMLAIAIDRLIAVCFPLRYRTISTR 102 (257)
T ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHHHHhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEeehhhhhhcccc
Confidence 466899999999999999888888753 2344566778988888777777788888889999999999999999888888
Q ss_pred ceeeeeehHhHHHHH
Q psy17199 91 KRVILKIAFVWLLSV 105 (182)
Q Consensus 91 ~~~~~~l~~~wi~s~ 105 (182)
+..........+.+.
T Consensus 103 ~y~~~~~~~~~~~s~ 117 (257)
T PF10320_consen 103 KYLIILLIFPVIYSI 117 (257)
T ss_pred cchhhHhHHHHHHHH
Confidence 744443343333333
No 14
>PHA02834 chemokine receptor-like protein; Provisional
Probab=98.52 E-value=5e-08 Score=77.27 Aligned_cols=74 Identities=18% Similarity=0.264 Sum_probs=60.0
Q ss_pred cceeeeeehHhHHHHHHHHhhhHhhccceeeeeeeceeEEEEeeeccccchhhHHHHHHHHHHhhhccceeeEEEeeeee
Q psy17199 90 RKRVILKIAFVWLLSVAMSLPLSLMYSQVIQLLHLDFGLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYL 169 (182)
Q Consensus 90 ~~~~~~~l~~~wi~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~si~~l~~isi~Ry~ 169 (182)
....+.+++++|+.. ...+|..+... .++|.+|+..|+...........+|+.+++++|+|||.
T Consensus 62 ~n~~i~nLAiaDll~-~~~lP~~i~~~---------------~~~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~ 125 (323)
T PHA02834 62 VDVYLFNIAMSDLML-VFSFPFIIHND---------------LNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYI 125 (323)
T ss_pred hhhhhHHHHHHHHHH-HHHHHHHHHHH---------------cCCcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345678899999875 55778654322 34699999999999988888888999999999999999
Q ss_pred eeeccccccc
Q psy17199 170 SLKYPIKFGR 179 (182)
Q Consensus 170 ai~~pl~~~~ 179 (182)
+|++|++++.
T Consensus 126 aI~~P~~~~~ 135 (323)
T PHA02834 126 LVVNATKIKN 135 (323)
T ss_pred heeCchhccC
Confidence 9999987643
No 15
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=98.29 E-value=2e-07 Score=76.33 Aligned_cols=74 Identities=19% Similarity=0.397 Sum_probs=59.9
Q ss_pred ceeeeeehHhHHHHHHHHhhhHhhccceeeeeeeceeEEEEeeeccccchhhHHHHHHHHHHhhhccceeeEEEeeeeee
Q psy17199 91 KRVILKIAFVWLLSVAMSLPLSLMYSQVIQLLHLDFGLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLS 170 (182)
Q Consensus 91 ~~~~~~l~~~wi~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~si~~l~~isi~Ry~a 170 (182)
...+.+++++|++. +..+|..+... .+.|.+++..|+....+......++++.++++++|||+|
T Consensus 133 ~i~llnLAisDLl~-~l~lPf~i~~~---------------~~~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYla 196 (417)
T PHA02638 133 DIYIFNLAISDLIF-VIDFPFIIYNE---------------FDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFA 196 (417)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHH---------------hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788889765 44677655432 256999999999999999999999999999999999999
Q ss_pred eecccccccC
Q psy17199 171 LKYPIKFGRY 180 (182)
Q Consensus 171 i~~pl~~~~~ 180 (182)
|+||.++++.
T Consensus 197 Iv~p~~~~~~ 206 (417)
T PHA02638 197 ILYPISFQKY 206 (417)
T ss_pred Hhccccccce
Confidence 9999886543
No 16
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=98.28 E-value=2.6e-08 Score=74.75 Aligned_cols=77 Identities=23% Similarity=0.393 Sum_probs=65.1
Q ss_pred ceeeeeehHhHHHHHHHHhhhHhhccceeeeeeeceeEEEEeeeccccchhhHHHHHHHHHHhhhccceeeEEEeeeeee
Q psy17199 91 KRVILKIAFVWLLSVAMSLPLSLMYSQVIQLLHLDFGLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLS 170 (182)
Q Consensus 91 ~~~~~~l~~~wi~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~si~~l~~isi~Ry~a 170 (182)
...+.+++++|++..+...|...... ..++|..++..|+............+...++++++|||.+
T Consensus 20 ~~~l~~Lav~Dll~~~~~~~~~~~~~--------------~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~ 85 (257)
T PF00001_consen 20 NILLLNLAVADLLVGLFCIPFYIYSL--------------LFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYLA 85 (257)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHH--------------HHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccccccc--------------cccccccccccccccccccccccccccccccccccccccc
Confidence 33677899999998887777665544 2357899999999999999999999999999999999999
Q ss_pred eecccccccCC
Q psy17199 171 LKYPIKFGRYF 181 (182)
Q Consensus 171 i~~pl~~~~~~ 181 (182)
+++|+++++++
T Consensus 86 i~~p~~~~~~~ 96 (257)
T PF00001_consen 86 ICHPLRYRRIR 96 (257)
T ss_dssp HHSHHTHHHHS
T ss_pred ccccccccccc
Confidence 99999987654
No 17
>PHA03235 DNA packaging protein UL33; Provisional
Probab=98.13 E-value=8.9e-07 Score=72.37 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=57.4
Q ss_pred cceeeeeehHhHHHHHHHHhhhHhhccceeeeeeeceeEEEEeeeccccchhhHHHHHHHHHHhhhccceeeEEEeeeee
Q psy17199 90 RKRVILKIAFVWLLSVAMSLPLSLMYSQVIQLLHLDFGLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYL 169 (182)
Q Consensus 90 ~~~~~~~l~~~wi~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~si~~l~~isi~Ry~ 169 (182)
....+.+++++|++. +..+|..+... ...|..++..|++..+.....+.+|+.++++||+|||.
T Consensus 69 ~~~~I~NLAvsDLl~-l~~lP~~i~~~---------------~~~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~ 132 (409)
T PHA03235 69 PTLYMTNLYLANLLT-VFVLPFIMLSN---------------QGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYR 132 (409)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHhc---------------CccccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999986 45777665432 12244457899999999999999999999999999999
Q ss_pred eeecccccc
Q psy17199 170 SLKYPIKFG 178 (182)
Q Consensus 170 ai~~pl~~~ 178 (182)
+|++|.+++
T Consensus 133 aI~~p~~~~ 141 (409)
T PHA03235 133 VIHQRTRAR 141 (409)
T ss_pred Heechhhcc
Confidence 999997653
No 18
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=98.05 E-value=1.3e-06 Score=69.38 Aligned_cols=76 Identities=26% Similarity=0.346 Sum_probs=60.7
Q ss_pred ceeeeeehHhHHHHHHHHhhhHhhccceeeeeeeceeEEEEeeeccccchhhHHHHHHHHHHhhhccceeeEEEeeeeee
Q psy17199 91 KRVILKIAFVWLLSVAMSLPLSLMYSQVIQLLHLDFGLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLS 170 (182)
Q Consensus 91 ~~~~~~l~~~wi~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~si~~l~~isi~Ry~a 170 (182)
+..+.+++++|++..+ ..|...... ..+.|..++..|+...........+++++++++++|||.+
T Consensus 75 ~~ll~~laisDll~~~-~~~~~~~~~--------------~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~a 139 (335)
T PHA03087 75 DIYLLNLAVSDLLFVM-TLPFQIYYY--------------ILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIA 139 (335)
T ss_pred HHHHHHHHHHHHHHHH-hHHHHHHHH--------------hCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356678888887655 455544333 3467889999999999999999999999999999999999
Q ss_pred eecccccccCC
Q psy17199 171 LKYPIKFGRYF 181 (182)
Q Consensus 171 i~~pl~~~~~~ 181 (182)
+++|++++..+
T Consensus 140 I~~p~~~~~~~ 150 (335)
T PHA03087 140 IVHPVKSNKIN 150 (335)
T ss_pred hhccCcccccc
Confidence 99999886643
No 19
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=97.80 E-value=0.00019 Score=55.59 Aligned_cols=100 Identities=21% Similarity=0.401 Sum_probs=71.5
Q ss_pred chhhHhHHHHHHHHHHHHHhh----hhhhccccccccccch-hHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccc
Q psy17199 13 HLFIIFTHLQLLHFLLCHFQV----PLCCLPGYFPLPPVYC-LTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRN 87 (182)
Q Consensus 13 ~~n~~l~~La~~Dl~~~~~~~----p~~~~~~~~~~~~~~C-~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~ 87 (182)
.-+.+-.+.|++|.+.+...+ |...... ....+... ...+.........+..+-.+||++|+.|+..|.+|++.
T Consensus 27 sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~-~~~~~~~~s~~~g~~~~~~y~~~~~~~~liaiNRf~ai~fP~~y~~~ 105 (274)
T PF10328_consen 27 SFGILCASQAIANIIICLIFLFWVVPMTLLDI-SFLPSSLNSIIFGFIGMFCYFIGPLSHLLIAINRFCAIFFPFKYKKI 105 (274)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeeHHHHHhH
Confidence 346788899999999877443 3333322 22232222 23344455555667788889999999999999999999
Q ss_pred eecceeeeeehHhHHHHHHHHhhhHh
Q psy17199 88 KTRKRVILKIAFVWLLSVAMSLPLSL 113 (182)
Q Consensus 88 ~t~~~~~~~l~~~wi~s~~~~~p~~~ 113 (182)
.+.+.....++..|..+.....+...
T Consensus 106 fs~~~T~~~i~~~~~~~~~~~~~~~~ 131 (274)
T PF10328_consen 106 FSFKNTIILIAFIWLLSIIISTILYF 131 (274)
T ss_pred cCccceehhhhHHHHHHHHHHHHhhh
Confidence 99999999999999998866655543
No 20
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=97.76 E-value=0.00022 Score=56.28 Aligned_cols=105 Identities=21% Similarity=0.263 Sum_probs=75.2
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhhhccccccccccch------------hHHhHHHHHHHHHHHHHHHHHHHhhhheee
Q psy17199 12 DHLFIIFTHLQLLHFLLCHFQVPLCCLPGYFPLPPVYC------------LTWICLDVLFCTASIMHLCTISVDRYLSLK 79 (182)
Q Consensus 12 ~~~n~~l~~La~~Dl~~~~~~~p~~~~~~~~~~~~~~C------------~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~ 79 (182)
+..|.++..+|++|+......++...........+..| .+...+....--.|.+..+.+|..|+.++.
T Consensus 29 ~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~~S~WL~V~mA~iR~l~i~ 108 (318)
T PF10324_consen 29 SSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFRRISIWLGVLMALIRYLSIK 108 (318)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999988877765311000011223 223344555667788999999999999999
Q ss_pred cccccc--cceecceeeeeehHhHHHHHHHHhhhHhhcc
Q psy17199 80 YPIKFG--RNKTRKRVILKIAFVWLLSVAMSLPLSLMYS 116 (182)
Q Consensus 80 ~pl~~~--~~~t~~~~~~~l~~~wi~s~~~~~p~~~~~~ 116 (182)
+|++.+ ...+++.+...+.++.+.+.....+......
T Consensus 109 ~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~ 147 (318)
T PF10324_consen 109 FPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYK 147 (318)
T ss_pred hhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEE
Confidence 998864 3556788888888888888888887665443
No 21
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=97.17 E-value=0.0034 Score=46.48 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=55.3
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhh---hccccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecc
Q psy17199 14 LFIIFTHLQLLHFLLCHFQVPLC---CLPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYP 81 (182)
Q Consensus 14 ~n~~l~~La~~Dl~~~~~~~p~~---~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~p 81 (182)
-+-++.||.++|++.++..+... +..+.-..++..|..++++......++-+...+||++-|+.+.+|
T Consensus 36 R~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~ 106 (201)
T PF11710_consen 36 RHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35589999999999987654422 223444566789999999999999999999999999999999888
No 22
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.88 E-value=0.002 Score=50.24 Aligned_cols=99 Identities=17% Similarity=0.387 Sum_probs=69.8
Q ss_pred hhHhHHHHHHHHHHHHHhhhhhhcc------c-cccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeeccc-cccc
Q psy17199 15 FIIFTHLQLLHFLLCHFQVPLCCLP------G-YFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPI-KFGR 86 (182)
Q Consensus 15 n~~l~~La~~Dl~~~~~~~p~~~~~------~-~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl-~~~~ 86 (182)
+-++.+-+++|++...........+ + ....++..-++.....+.....-....+.++++|+.++++|. ++.+
T Consensus 34 y~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~ 113 (283)
T PF10323_consen 34 YTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPTSRHTK 113 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEeecHHHhh
Confidence 4578899999999866543333211 0 112222334455555556666667778899999999999999 6677
Q ss_pred ceecceeeeeehHhHHHHHHHHhhhHh
Q psy17199 87 NKTRKRVILKIAFVWLLSVAMSLPLSL 113 (182)
Q Consensus 87 ~~t~~~~~~~l~~~wi~s~~~~~p~~~ 113 (182)
..++.+.....++-|+...+.+.|...
T Consensus 114 ~~~~~~~~~i~~i~wi~p~li~~~~~~ 140 (283)
T PF10323_consen 114 FWQPAKIWIIILIQWIPPLLISLPFFF 140 (283)
T ss_pred hccccchhheeeeeehhhhhheeeeec
Confidence 778888888999999999998888443
No 23
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=96.81 E-value=0.00035 Score=53.67 Aligned_cols=73 Identities=19% Similarity=0.377 Sum_probs=52.5
Q ss_pred eeeeehHhHHHHHHHHhhhHhhccceeeeeeeceeEEEEeeeccccchhhHHHHHHHHHHhhhccceeeEEEeeeeeeee
Q psy17199 93 VILKIAFVWLLSVAMSLPLSLMYSQVIQLLHLDFGLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLK 172 (182)
Q Consensus 93 ~~~~l~~~wi~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~si~~l~~isi~Ry~ai~ 172 (182)
.+..++..|+......+|...... ++.+.....|-.+..............+.++++||+.||+
T Consensus 28 li~~~~~~d~~~~~~~~~~~~~~~----------------~~~~i~~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV~ 91 (257)
T PF10320_consen 28 LICILCFADLICLLGTLPFMLFLF----------------RDHQITRSECFWQIFFYIFFQCAQSVIMLAIAIDRLIAVC 91 (257)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH----------------hheeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEe
Confidence 344566788888776677655333 2223456677777777777777777777889999999999
Q ss_pred cccccccCC
Q psy17199 173 YPIKFGRYF 181 (182)
Q Consensus 173 ~pl~~~~~~ 181 (182)
.|++|++..
T Consensus 92 ~P~~Y~~~~ 100 (257)
T PF10320_consen 92 FPLRYRTIS 100 (257)
T ss_pred ehhhhhhcc
Confidence 999998764
No 24
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=95.63 E-value=0.019 Score=44.31 Aligned_cols=96 Identities=20% Similarity=0.310 Sum_probs=66.7
Q ss_pred chhhHhHHHHHHHHHHHHH-hhhhhhcc-ccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheee-cccccc----
Q psy17199 13 HLFIIFTHLQLLHFLLCHF-QVPLCCLP-GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLK-YPIKFG---- 85 (182)
Q Consensus 13 ~~n~~l~~La~~Dl~~~~~-~~p~~~~~-~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~-~pl~~~---- 85 (182)
+.+..+.|||+++.++.+. .+|..... +...+++..||+..|+.-+.-..|+.+....++ ++||. .|-+.+
T Consensus 10 p~dlIl~hLa~aN~lvLl~rGip~~~~~~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSv--fQAItISP~~s~w~~l 87 (265)
T PF03402_consen 10 PIDLILIHLALANILVLLSRGIPQTMAFFGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSV--FQAITISPSNSRWAEL 87 (265)
T ss_pred cHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcccCCCceeeeeeeehHHhchhhHHhhhHHHH--HhhEEEecCCchhhhh
Confidence 5788999999999988754 34543322 222468999999999999999999999998998 55665 343221
Q ss_pred cceecceeeeeehHhHHHHHHHHhh
Q psy17199 86 RNKTRKRVILKIAFVWLLSVAMSLP 110 (182)
Q Consensus 86 ~~~t~~~~~~~l~~~wi~s~~~~~p 110 (182)
+.+.+|.....+...|++-.+....
T Consensus 88 K~k~pk~i~~~~~~~Wilnlli~~~ 112 (265)
T PF03402_consen 88 KVKAPKYIGPSCLFCWILNLLININ 112 (265)
T ss_pred hhhcCCccccHHHHHHHHHHhhhcc
Confidence 2234445555567779887766543
No 25
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=94.29 E-value=0.32 Score=38.40 Aligned_cols=96 Identities=11% Similarity=0.032 Sum_probs=64.4
Q ss_pred cchhhHhHHHHHHHHHHHHHhhhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccceecc
Q psy17199 12 DHLFIIFTHLQLLHFLLCHFQVPLCCLPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRK 91 (182)
Q Consensus 12 ~~~n~~l~~La~~Dl~~~~~~~p~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~t~~ 91 (182)
++.|=++.-++++|++.....+..... .+...++..|++++++...+..++.+-..+||++=|..+++.....++..
T Consensus 39 ~~~~rli~yl~~~~ll~~v~~~~~~~~-~~~~~~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~~~~~~k~e-- 115 (303)
T PF05462_consen 39 KPINRLIFYLSIANLLTNVASMIMTLS-PSAGENSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKRYDELEKLE-- 115 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEcCccHHHHH--
Confidence 345566778889999876544333322 23344567899999999999999988888899999988876533222221
Q ss_pred eeeeeehHhHHHHHHHHhhhH
Q psy17199 92 RVILKIAFVWLLSVAMSLPLS 112 (182)
Q Consensus 92 ~~~~~l~~~wi~s~~~~~p~~ 112 (182)
..-...+|...++.+..+.
T Consensus 116 --~~Y~l~~wGiPli~a~i~l 134 (303)
T PF05462_consen 116 --KYYHLVCWGIPLIPAVIPL 134 (303)
T ss_pred --HHHHHHHHHHHHHHHHHHH
Confidence 2244677888887655443
No 26
>KOG2087|consensus
Probab=94.12 E-value=0.0019 Score=51.25 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=59.6
Q ss_pred eecceeeeeehHhHHHHHHHHhhhHhhccceeeeeeeceeEEEEeeeccccchhhHHHHHHHHHHhhhccceeeEEEeee
Q psy17199 88 KTRKRVILKIAFVWLLSVAMSLPLSLMYSQVIQLLHLDFGLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDR 167 (182)
Q Consensus 88 ~t~~~~~~~l~~~wi~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~si~~l~~isi~R 167 (182)
...+..+.+++.+++...+-.............+.. -.+.|.-....|+.-+++..+-+-.+++.++.+++||
T Consensus 57 ~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~-------~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr 129 (363)
T KOG2087|consen 57 NSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYY-------KHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLER 129 (363)
T ss_pred cchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHH-------HHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777888888766543333232222211111 1233555668899999999999999999999999999
Q ss_pred eeeeecccccccC
Q psy17199 168 YLSLKYPIKFGRY 180 (182)
Q Consensus 168 y~ai~~pl~~~~~ 180 (182)
+++|.+|+|.++.
T Consensus 130 ~l~i~~p~~~~~~ 142 (363)
T KOG2087|consen 130 WLSITYPFRLDRK 142 (363)
T ss_pred HhheeccccCCCc
Confidence 9999999986543
No 27
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=81.81 E-value=20 Score=27.98 Aligned_cols=91 Identities=19% Similarity=0.286 Sum_probs=58.2
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhh--hcc----------cc-ccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeec
Q psy17199 14 LFIIFTHLQLLHFLLCHFQVPLC--CLP----------GY-FPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKY 80 (182)
Q Consensus 14 ~n~~l~~La~~Dl~~~~~~~p~~--~~~----------~~-~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~ 80 (182)
.-+++.|-|+.|++.+....-.. ..+ |. ..+|+..|-....+...+...+...+..--..||..+.+
T Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~ 113 (292)
T PF10317_consen 34 YSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFCFFCYHIMLHFSIHSGWSIILSFYYRYYILRN 113 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45789999999999876443332 111 11 235667777666666666677777777777899988776
Q ss_pred ccccccceecceeeeeehHhHHHHHHHHh
Q psy17199 81 PIKFGRNKTRKRVILKIAFVWLLSVAMSL 109 (182)
Q Consensus 81 pl~~~~~~t~~~~~~~l~~~wi~s~~~~~ 109 (182)
+-. ++++....+...+..+.....
T Consensus 114 ~~~-----~~~~~i~~~~l~~~p~~~~~i 137 (292)
T PF10317_consen 114 PSP-----SRKRIIFICILIYIPSFSMLI 137 (292)
T ss_pred CCC-----chhHHHHHHHHHHHHHHHHHH
Confidence 522 445555566666666555544
No 28
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=79.03 E-value=4.2 Score=30.79 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=36.4
Q ss_pred cccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccc
Q psy17199 41 YFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRN 87 (182)
Q Consensus 41 ~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~ 87 (182)
+.......++..-......+..+.+....+++||+.|+...-+|.+.
T Consensus 77 dLiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~ 123 (236)
T PF02175_consen 77 DLIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENT 123 (236)
T ss_pred eEEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccC
Confidence 34456666777777777788888899999999999999887666443
No 29
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=78.66 E-value=0.98 Score=34.84 Aligned_cols=37 Identities=14% Similarity=0.381 Sum_probs=28.0
Q ss_pred HHHHHHHhhhccceeeEEEeeeeeeeecccccccCCC
Q psy17199 146 ICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRYFP 182 (182)
Q Consensus 146 ~~~~~~~~~~si~~l~~isi~Ry~ai~~pl~~~~~~~ 182 (182)
+.....+-..+...-..+|+.|+.|+..|.+|+++++
T Consensus 71 g~~~~~~y~~~~~~~~liaiNRf~ai~fP~~y~~~fs 107 (274)
T PF10328_consen 71 GFIGMFCYFIGPLSHLLIAINRFCAIFFPFKYKKIFS 107 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeeeHHHHHhHcC
Confidence 4444555556667778899999999999999877653
No 30
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=74.23 E-value=1 Score=33.90 Aligned_cols=94 Identities=15% Similarity=-0.008 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHHHhhhhhhcccccc--ccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccceecce
Q psy17199 15 FIIFTHLQLLHFLLCHFQVPLCCLPGYFP--LPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKR 92 (182)
Q Consensus 15 n~~l~~La~~Dl~~~~~~~p~~~~~~~~~--~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~t~~~ 92 (182)
+....||++++++.....+.......... ..+..|+..+...+....++..-+.+.+.+=|..+..+.+. .+++
T Consensus 36 ~~i~~~l~~sll~~~~~~l~~~~~~~~~~~~~~~~~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~~~----~~~~ 111 (242)
T PF00002_consen 36 NKIHLNLCLSLLLANLSFLIGISQTFSPISTTNHCLCRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVFNS----SRRR 111 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhhHHHHHHHHHHHheehhhccccccccccccchhhhhHhHHHHHHHHHHHHHHHHHhheeEEEeecc----cchh
Confidence 55678999998877653332211111111 12335999999999888777777888888888888766322 2334
Q ss_pred eeeeehHhHHHHHHHHhhhH
Q psy17199 93 VILKIAFVWLLSVAMSLPLS 112 (182)
Q Consensus 93 ~~~~l~~~wi~s~~~~~p~~ 112 (182)
...-....|....+......
T Consensus 112 ~~~~~~~gwg~P~~iv~i~~ 131 (242)
T PF00002_consen 112 FWWYYLIGWGIPALIVVISV 131 (242)
T ss_dssp --------------------
T ss_pred hheeeeeeecCcceeeeeee
Confidence 44556677887776655433
No 31
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=73.41 E-value=5.6 Score=30.96 Aligned_cols=71 Identities=8% Similarity=-0.026 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhhhhc--cccc---cc-cccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccceecc
Q psy17199 21 LQLLHFLLCHFQVPLCCL--PGYF---PL-PPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRK 91 (182)
Q Consensus 21 La~~Dl~~~~~~~p~~~~--~~~~---~~-~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~t~~ 91 (182)
....|...+....+.... ...+ .. ....--..+................|++||-.|+..|..|++.+++-
T Consensus 47 Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~ 123 (273)
T PF10316_consen 47 RFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKI 123 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccc
Confidence 467888888766555421 1111 11 11111111222222333444556689999999999999986665543
No 32
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=73.15 E-value=24 Score=28.88 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=53.8
Q ss_pred hHhHHHHHHHHHHHHHhhhhh-hc----c----------ccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeec
Q psy17199 16 IIFTHLQLLHFLLCHFQVPLC-CL----P----------GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKY 80 (182)
Q Consensus 16 ~~l~~La~~Dl~~~~~~~p~~-~~----~----------~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~ 80 (182)
-.+..||++|++.++ .+-.. .+ + +.-..+...|.....-..++..++.+-+.+.|+|-|+.+.+
T Consensus 69 rIl~~la~aDlLacl-GVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 69 RILFWLAVADLLACL-GVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred hhHHHHHHHHHHhhh-hHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 367899999998877 44333 11 1 11112446788766655566667777788899999987643
Q ss_pred ccccccceecceeeeeehHhHHHHHHHHhh
Q psy17199 81 PIKFGRNKTRKRVILKIAFVWLLSVAMSLP 110 (182)
Q Consensus 81 pl~~~~~~t~~~~~~~l~~~wi~s~~~~~p 110 (182)
.-.. .....--.++|..+.+++.-
T Consensus 148 ~ag~------~~~~lYH~~aWgl~~lL~~~ 171 (405)
T PF02101_consen 148 SAGR------STIWLYHMMAWGLPALLCAE 171 (405)
T ss_pred cCCC------cchhHHHHHHHHHHHHHHHh
Confidence 2111 11223345788888776653
No 33
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=70.20 E-value=20 Score=28.51 Aligned_cols=83 Identities=14% Similarity=0.247 Sum_probs=49.7
Q ss_pred hhHhHHHHHHHHHHHHHhhhhhhccccc-cccccchhHHhHHHHHH------HHHHHHHHHHHHHhhhheeecccccccc
Q psy17199 15 FIIFTHLQLLHFLLCHFQVPLCCLPGYF-PLPPVYCLTWICLDVLF------CTASIMHLCTISVDRYLSLKYPIKFGRN 87 (182)
Q Consensus 15 n~~l~~La~~Dl~~~~~~~p~~~~~~~~-~~~~~~C~~~~~~~~~~------~~~s~~~l~~iav~Ry~ai~~pl~~~~~ 87 (182)
+=.+.-|++.|+........ .+|-. ..|...|+...+..... =.++......++++|..-+..+...+..
T Consensus 68 ykiM~~L~i~Di~~l~~~si---~tG~l~i~G~vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~ 144 (313)
T PF10321_consen 68 YKIMFFLAIFDIIQLFINSI---ITGILAIFGAVFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFL 144 (313)
T ss_pred HHHHHHHHHHHHHHHHhhhh---hhhHHHhcCccccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHh
Confidence 44677899999987653322 23322 24566676544333222 2345566778899999888877665555
Q ss_pred eecceeeeeehHh
Q psy17199 88 KTRKRVILKIAFV 100 (182)
Q Consensus 88 ~t~~~~~~~l~~~ 100 (182)
...++....+.+.
T Consensus 145 F~g~~~~~~l~~~ 157 (313)
T PF10321_consen 145 FEGKRTYIVLFLP 157 (313)
T ss_pred hcCceEEeeehhH
Confidence 5666665554443
No 34
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=69.27 E-value=15 Score=28.06 Aligned_cols=42 Identities=21% Similarity=0.490 Sum_probs=31.7
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccc
Q psy17199 46 PVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRN 87 (182)
Q Consensus 46 ~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~ 87 (182)
....++..++......+-..+...++++|.-++..|.++++.
T Consensus 78 ~~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~ 119 (275)
T PF02118_consen 78 PFFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKF 119 (275)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 344556666666667777777889999999999999887544
No 35
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=67.53 E-value=20 Score=25.40 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhhhheeecccccccceecceeeeeehHhHHHHHHHHh
Q psy17199 57 VLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMSL 109 (182)
Q Consensus 57 ~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~t~~~~~~~l~~~wi~s~~~~~ 109 (182)
.+......+.-+.|+++|-..+.+|.+.+...|.+|...-+....+..+...+
T Consensus 52 tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~Ll 104 (153)
T PF03383_consen 52 TFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLL 104 (153)
T ss_pred hHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHH
Confidence 33444556667789999999999999976677888777766665555554433
No 36
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=64.79 E-value=27 Score=27.76 Aligned_cols=44 Identities=5% Similarity=0.066 Sum_probs=32.9
Q ss_pred ccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccc
Q psy17199 44 LPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRN 87 (182)
Q Consensus 44 ~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~ 87 (182)
.+...|-..-............+..++.+||..|.++.-+|.+.
T Consensus 91 ~~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~ 134 (324)
T PF10292_consen 91 PSTYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS 134 (324)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC
Confidence 34455666666666677777788889999999999988777533
No 37
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=51.52 E-value=1.2e+02 Score=23.91 Aligned_cols=73 Identities=14% Similarity=-0.045 Sum_probs=51.3
Q ss_pred ecchhhHhHHHHHHHHHHHHHhhhhhhc---cccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccc
Q psy17199 11 IDHLFIIFTHLQLLHFLLCHFQVPLCCL---PGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIK 83 (182)
Q Consensus 11 ~~~~n~~l~~La~~Dl~~~~~~~p~~~~---~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~ 83 (182)
+++.+..+.+||++++..-......... .......+..++...+...+.-..|.+..+..++-=++.|...-+
T Consensus 41 l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~ 116 (303)
T PF05296_consen 41 LSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSH 116 (303)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCc
Confidence 5677889999999999876644433322 222234455677777777777788999999999987888876543
No 38
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=43.79 E-value=2.6 Score=31.90 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=38.3
Q ss_pred cccchhhHHHHHHHHHHhhhccceeeEEEeeeeeeeecccccccCC
Q psy17199 136 PLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRYF 181 (182)
Q Consensus 136 ~~~~~~c~~~~~~~~~~~~~si~~l~~isi~Ry~ai~~pl~~~~~~ 181 (182)
-.+...++............+.+....+++||+.|..+.-+|+..+
T Consensus 79 iI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r 124 (236)
T PF02175_consen 79 IIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTR 124 (236)
T ss_pred EEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCc
Confidence 3456778888888888888999999999999999999887776543
No 39
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=42.38 E-value=1.7 Score=32.10 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=48.8
Q ss_pred cceeeeeehHhHHHHHHHHhhhHhhccceeeeeeeceeEEEEeeeccccchhhHHHHHHHHHHhhhccceeeEEEeeeee
Q psy17199 90 RKRVILKIAFVWLLSVAMSLPLSLMYSQVIQLLHLDFGLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYL 169 (182)
Q Consensus 90 ~~~~~~~l~~~wi~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~si~~l~~isi~Ry~ 169 (182)
+++.+.++..+|+.-.+..+.....+... +.-.-+...|..++.+......++-+...+|+++-|+
T Consensus 36 R~~LIl~L~~aD~~qal~~~i~~~~~l~~--------------~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l 101 (201)
T PF11710_consen 36 RHQLILNLLLADFIQALAFLISPIRWLAR--------------GGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFL 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467778888887666555433333311 1223456889999998888777777778888888888
Q ss_pred eeecc
Q psy17199 170 SLKYP 174 (182)
Q Consensus 170 ai~~p 174 (182)
.+.+|
T Consensus 102 ~v~~~ 106 (201)
T PF11710_consen 102 IVFRP 106 (201)
T ss_pred HHhcC
Confidence 88888
No 40
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=42.26 E-value=5.3 Score=31.13 Aligned_cols=36 Identities=17% Similarity=0.462 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhccceeeEEEeeeeeeeeccc-cccc
Q psy17199 144 TWICLDVLFCTASIMHLCTISVDRYLSLKYPI-KFGR 179 (182)
Q Consensus 144 ~~~~~~~~~~~~si~~l~~isi~Ry~ai~~pl-~~~~ 179 (182)
.................+.+|+.||.||++|. ++++
T Consensus 77 ~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~ 113 (283)
T PF10323_consen 77 IYYNIAYYFLYIQCIGIVLLSLNRYLAICFPTSRHTK 113 (283)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhheEEeecHHHhh
Confidence 33444445555666677889999999999998 4443
No 41
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=39.11 E-value=76 Score=24.62 Aligned_cols=91 Identities=18% Similarity=0.259 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhhhhhcc-------ccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccceecce
Q psy17199 20 HLQLLHFLLCHFQVPLCCLP-------GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKR 92 (182)
Q Consensus 20 ~La~~Dl~~~~~~~p~~~~~-------~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~t~~~ 92 (182)
...+.|+..+....|....+ |-...-+.....+.++..........+...+--+|+.++..+-+. ..+++
T Consensus 49 ~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~---~~~~~ 125 (302)
T PF10318_consen 49 WNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSR---SLWKK 125 (302)
T ss_pred HHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccc---ccchh
Confidence 34667888888787876431 211111233455555555555566667777788999888755331 11111
Q ss_pred e-eeeehHhHHHHHHHHhhhHh
Q psy17199 93 V-ILKIAFVWLLSVAMSLPLSL 113 (182)
Q Consensus 93 ~-~~~l~~~wi~s~~~~~p~~~ 113 (182)
. ........+.+.....|...
T Consensus 126 ~r~~~~~~~y~~~~~~~~~~~~ 147 (302)
T PF10318_consen 126 IRIIFIIFNYIIAFLFFIPIYL 147 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc
Confidence 1 12233444555555555544
No 42
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=38.03 E-value=57 Score=25.38 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=39.8
Q ss_pred hhHhHHHHHHHHHHHHHhh---hhhhc----------cccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecc
Q psy17199 15 FIIFTHLQLLHFLLCHFQV---PLCCL----------PGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYP 81 (182)
Q Consensus 15 n~~l~~La~~Dl~~~~~~~---p~~~~----------~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~p 81 (182)
-+++...|+.|+..+.... |.... .+.+..+....+....+.......+...++.=-+.||.++++|
T Consensus 35 k~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~f~~~~~llaihFiYRY~av~~~ 114 (307)
T PF10326_consen 35 KYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQILLAIYCGCFGMSFSLLAIHFIYRYWAVCRP 114 (307)
T ss_pred EEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeehhhhhhhhHHHHHHHHHhHhhhheeeeccc
Confidence 3556667788887766544 33211 1222233333333333344444455555666777999999999
Q ss_pred ccc
Q psy17199 82 IKF 84 (182)
Q Consensus 82 l~~ 84 (182)
-+-
T Consensus 115 ~~l 117 (307)
T PF10326_consen 115 KKL 117 (307)
T ss_pred hhh
Confidence 764
No 43
>KOG4193|consensus
Probab=27.59 E-value=1.7e+02 Score=25.75 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=38.3
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccceecceeeeeehHhHHHHHHHHhh
Q psy17199 48 YCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMSLP 110 (182)
Q Consensus 48 ~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~~t~~~~~~~l~~~wi~s~~~~~p 110 (182)
.|...+.+.+++..+...-+..++..=|..++.-.+ ...+++.+......|..-.++...
T Consensus 385 ~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf~---~~~~~~~l~~~~~gwg~Pavvv~I 444 (610)
T KOG4193|consen 385 LCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVFR---SRPRRRKLLYSLYGWGVPAVVVGV 444 (610)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHhhhhHHHHhh
Confidence 699999999998888877777788777764443322 222233333334778766655443
No 44
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=26.97 E-value=40 Score=26.73 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=28.0
Q ss_pred cchhhHHHHHHHHHHhhhccceeeEEEeeeeeeeeccc
Q psy17199 138 PPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPI 175 (182)
Q Consensus 138 ~~~~c~~~~~~~~~~~~~si~~l~~isi~Ry~ai~~pl 175 (182)
++..|..++++......++.+=-++||++-|+.+.|+.
T Consensus 71 ~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~~ 108 (303)
T PF05462_consen 71 NSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKRY 108 (303)
T ss_pred CCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEcC
Confidence 35678888888877777777666677877788776643
No 45
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=24.19 E-value=3.7e+02 Score=21.34 Aligned_cols=96 Identities=17% Similarity=0.284 Sum_probs=49.0
Q ss_pred hhHhHHHHHHHHHHHHHh----hhhhh--c-cccccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccccccc
Q psy17199 15 FIIFTHLQLLHFLLCHFQ----VPLCC--L-PGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRN 87 (182)
Q Consensus 15 n~~l~~La~~Dl~~~~~~----~p~~~--~-~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~ 87 (182)
.-|+.+|.++-++.+... +|..+ + +.+... +..-.+.++.......+-.++=..+|+.|...--..-+..+.
T Consensus 50 fwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~-s~~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~t~~~ 128 (305)
T PF04789_consen 50 FWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQ-SELFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNLTDKV 128 (305)
T ss_pred HHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehhhhhhh
Confidence 346667777666655433 33332 1 222222 222345555555555666666678999996432211111122
Q ss_pred eecceeeeeehHhHHHHHHHHhhh
Q psy17199 88 KTRKRVILKIAFVWLLSVAMSLPL 111 (182)
Q Consensus 88 ~t~~~~~~~l~~~wi~s~~~~~p~ 111 (182)
..+....+=+..+|+++.......
T Consensus 129 F~s~~iyiWL~~vWils~~v~~~l 152 (305)
T PF04789_consen 129 FESPVIYIWLLLVWILSIGVVYSL 152 (305)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Confidence 233444555667788887654443
No 46
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=21.65 E-value=1.1e+02 Score=23.68 Aligned_cols=44 Identities=20% Similarity=0.133 Sum_probs=25.5
Q ss_pred eeccccchhhHHHHHHHHHHhhhccceeeEEEeeeeeeeecccc
Q psy17199 133 GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIK 176 (182)
Q Consensus 133 ~~~~~~~~~c~~~~~~~~~~~~~si~~l~~isi~Ry~ai~~pl~ 176 (182)
+.+..+.............+...++..++.--+.||+++++|-+
T Consensus 73 ~~~~~~~~~~~~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~ 116 (307)
T PF10326_consen 73 GPFFLSKSIGQILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKK 116 (307)
T ss_pred ccccccchheeehhhhhhhhHHHHHHHHHhHhhhheeeeccchh
Confidence 34444444443333433444444455555666899999999864
No 47
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=21.61 E-value=1.1e+02 Score=24.83 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=25.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhheeecccccccc
Q psy17199 52 WICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRN 87 (182)
Q Consensus 52 ~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~~~~~ 87 (182)
.+++....+......+.++++||..|-...-.|.++
T Consensus 126 ~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~ 161 (365)
T PF03125_consen 126 GGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK 161 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444455555677889999999998877777544
No 48
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=21.02 E-value=3.7e+02 Score=20.27 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=24.9
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHHhhhheeecccc
Q psy17199 45 PPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIK 83 (182)
Q Consensus 45 ~~~~C~~~~~~~~~~~~~s~~~l~~iav~Ry~ai~~pl~ 83 (182)
.-..|.+..-.......+.....+++|++||.-++...|
T Consensus 113 tI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 113 TIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred EEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 446777665544444444445566899999998875433
Done!