RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17199
         (182 letters)



>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
           This family contains, amongst other G-protein-coupled
           receptors (GCPRs), members of the opsin family, which
           have been considered to be typical members of the
           rhodopsin superfamily. They share several motifs, mainly
           the seven transmembrane helices, GCPRs of the rhodopsin
           superfamily. All opsins bind a chromophore, such as
           11-cis-retinal. The function of most opsins other than
           the photoisomerases is split into two steps: light
           absorption and G-protein activation. Photoisomerases, on
           the other hand, are not coupled to G-proteins - they are
           thought to generate and supply the chromophore that is
           used by visual opsins.
          Length = 251

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 40  GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAF 99
           G +P     C     L V+   ASI+ L  IS+DRYL++ +P+++ R +T +R  + I  
Sbjct: 42  GDWPFGDALCKLVGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILV 101

Query: 100 VWLLSVAMSLPLSLMYSQ 117
           VW+L++ +SLP  L    
Sbjct: 102 VWVLALLLSLPPLLFSWL 119



 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 128 LIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRY 180
             ++ G +P     C     L V+   ASI+ L  IS+DRYL++ +P+++ R 
Sbjct: 37  YYLVGGDWPFGDALCKLVGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRI 89


>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
           protein; Provisional.
          Length = 335

 Score = 34.0 bits (78), Expect = 0.028
 Identities = 14/53 (26%), Positives = 31/53 (58%)

Query: 63  SIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMSLPLSLMY 115
           S+  +  +SVDRY+++ +P+K  +  T K   +    +W++S+  + P+  +Y
Sbjct: 125 SMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVY 177


>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
           Provisional.
          Length = 417

 Score = 30.4 bits (68), Expect = 0.53
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 63  SIMHLCTI-SVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMSLPLSLMY 115
           S M L T+ S+DRY ++ YPI F + +T    I+     W+LS+ ++ P   ++
Sbjct: 181 SNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIF 234


>gnl|CDD|239379 cd03081, TRX_Fd_NuoE_FDH_gamma, TRX-like [2Fe-2S] Ferredoxin (Fd)
           family, NADH:ubiquinone oxidoreductase (Nuo) subunit E
           subfamily, NAD-dependent formate dehydrogenase (FDH)
           gamma subunit; composed of proteins similar to the gamma
           subunit of NAD-linked FDH of Ralstonia eutropha, a
           soluble enzyme that catalyzes the irreversible oxidation
           of formate to carbon dioxide accompanied by the
           reduction of NAD+ to NADH. FDH is a heteromeric enzyme
           composed of four nonidentical subunits (alpha, beta,
           gamma and delta). The FDH gamma subunit is closely
           related to NuoE, which is part of a multisubunit complex
           (Nuo) catalyzing the electron transfer of NADH to
           quinone coupled with the transfer of protons across the
           membrane. Electrons are transferred from NADH to quinone
           through a chain of iron-sulfur clusters in Nuo,
           including the [2Fe-2S] cluster present in NuoE.
           Similarly, the FDH gamma subunit is hypothesized to be
           involved in an electron transport chain involving other
           FDH subunits, upon the oxidation of formate.
          Length = 80

 Score = 26.2 bits (58), Expect = 3.3
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 114 MYSQVIQLLHLDFGLIMILGYFPLPPVYCL 143
           + + +   L +DF      G   L PVYCL
Sbjct: 20  LAAHIKARLGIDFHETTADGSVTLEPVYCL 49


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.339    0.153    0.534 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,451,615
Number of extensions: 855739
Number of successful extensions: 1303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1299
Number of HSP's successfully gapped: 59
Length of query: 182
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 91
Effective length of database: 6,901,388
Effective search space: 628026308
Effective search space used: 628026308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 56 (25.4 bits)