RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17199
(182 letters)
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 102 bits (255), Expect = 5e-26
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 40 GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAF 99
F CL C ++ +SI L I++DRY++++ P+++ T R IA
Sbjct: 83 TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAI 142
Query: 100 VWLLSVAMSLPLSLMY 115
W+LS A+ L L +
Sbjct: 143 CWVLSFAIGLTPMLGW 158
Score = 76.7 bits (188), Expect = 5e-17
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 129 IMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRYF 181
I I F CL C ++ +SI L I++DRY++++ P+++
Sbjct: 79 ITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLV 131
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 99.0 bits (246), Expect = 9e-25
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 40 GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAF 99
+ +C W +DVL TASI LC I+VDRY ++ P K+ T+ + + I
Sbjct: 104 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 163
Query: 100 VWLLSVAMSLP 110
VW++S S
Sbjct: 164 VWIVSGLTSFL 174
Score = 75.1 bits (184), Expect = 2e-16
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 131 ILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRYF 181
++ + +C W +DVL TASI LC I+VDRY ++ P K+
Sbjct: 102 LMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLL 152
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 98.2 bits (244), Expect = 1e-24
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 38 LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKI 97
+ GY+PL PV C W+ LD + AS+M+L IS DRY + P+ + +T K + I
Sbjct: 85 VIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMI 144
Query: 98 AFVWLLSVAMSLP 110
A W+LS + P
Sbjct: 145 AAAWVLSFILWAP 157
Score = 72.4 bits (177), Expect = 2e-15
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 131 ILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRY 180
++GY+PL PV C W+ LD + AS+M+L IS DRY + P+ +
Sbjct: 85 VIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVK 134
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 98.2 bits (244), Expect = 1e-24
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 38 LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKI 97
L + L CL W+ +D + TASI + + +DRY S++ P+++ + +T+ R I
Sbjct: 70 LMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATI 129
Query: 98 AFVWLLSVAMSLPL 111
W LS +P+
Sbjct: 130 LGAWFLSFLWVIPI 143
Score = 73.2 bits (179), Expect = 9e-16
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 131 ILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRY 180
++ + L CL W+ +D + TASI + + +DRY S++ P+++ +Y
Sbjct: 70 LMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKY 119
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 96.4 bits (239), Expect = 7e-24
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 38 LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTR---KRVI 94
G + + C ++ LDV+ CTASI +LC IS+DRY ++ P+ + + +RV
Sbjct: 101 TGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVA 160
Query: 95 LKIAFVWLLSVAMSLPLSLMYS-----QVIQLLHLDFGLIMILGYFPLPP-----VYCLT 144
L I VW+L+ A+S PL ++ V + + DF + + F LP VY
Sbjct: 161 LMITAVWVLAFAVSCPLLFGFNTTGDPTVCSISNPDFVIYSSVVSFYLPFGVTVLVYARI 220
Query: 145 WI 146
++
Sbjct: 221 YV 222
Score = 72.9 bits (178), Expect = 1e-15
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 126 FGLIMIL--GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRY 180
+ + + + G + + C ++ LDV+ CTASI +LC IS+DRY ++ P+ +
Sbjct: 94 WVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHG 150
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 95.9 bits (238), Expect = 7e-24
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 40 GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAF 99
F CL C ++ +SI L I++DRY++++ P+++ T R IA
Sbjct: 93 TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAI 152
Query: 100 VWLLSVAMSLPLSLMY 115
W+LS A+ L L +
Sbjct: 153 CWVLSFAIGLTPMLGW 168
Score = 71.6 bits (175), Expect = 3e-15
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 129 IMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRYF 181
I I F CL C ++ +SI L I++DRY++++ P+++
Sbjct: 89 ITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLV 141
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 91.9 bits (228), Expect = 2e-22
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 40 GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAF 99
+ +C W +DVL TASI LC I+VDRY ++ P K+ T+ + + I
Sbjct: 246 KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 305
Query: 100 VWLLSVAMSLPLSLM 114
VW++S S M
Sbjct: 306 VWIVSGLTSFLPIQM 320
Score = 69.9 bits (171), Expect = 1e-14
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 131 ILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLS----LKYPIKF 177
+ + +C W +DVL TASI LC I+VDRY + KY
Sbjct: 244 LTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLL 294
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 79.4 bits (196), Expect = 3e-18
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 40 GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAF 99
G + C W LDVL TASI LC I++DRYL++ P ++ TR R + I
Sbjct: 75 GTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICT 134
Query: 100 VWLLSVAMSLPLSLM 114
VW +S +S +M
Sbjct: 135 VWAISALVSFLPIMM 149
Score = 60.5 bits (147), Expect = 2e-11
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 131 ILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRYF 181
+ G + C W LDVL TASI LC I++DRYL++ P ++
Sbjct: 73 VRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLM 123
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 77.2 bits (189), Expect = 4e-17
Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 10/136 (7%)
Query: 38 LPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKI 97
+ L P + +AS+ L I+++RY+++ R+ L I
Sbjct: 124 GATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLH-NGSNNFRLFLLI 182
Query: 98 AFVWLLSVAMSLPLSLMY---------SQVIQLLHLDFGLIMILGYFPLPPVYCLTWICL 148
+ W++S+ + + + S V+ L H + L + L + + +
Sbjct: 183 SACWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYILFCTTVFTLLLLSIVILYCRI 242
Query: 149 DVLFCTASIMHLCTIS 164
L T +I + I
Sbjct: 243 YSLVRTRNIFEMLRID 258
Score = 59.5 bits (143), Expect = 5e-11
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 126 FGLIMILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPI 175
L+ + L P + +AS+ L I+++RY+++
Sbjct: 119 NLLLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMK 168
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 58.4 bits (141), Expect = 1e-10
Identities = 20/83 (24%), Positives = 35/83 (42%)
Query: 37 CLPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILK 96
C + C + + +F SIM + IS+DRY + P+ + + +R +
Sbjct: 96 CFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIM 155
Query: 97 IAFVWLLSVAMSLPLSLMYSQVI 119
I FVWL SV ++ +
Sbjct: 156 IIFVWLWSVLWAIGPIFGWGAYT 178
Score = 40.7 bits (95), Expect = 1e-04
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 131 ILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRYF 181
L + C + + +F SIM + IS+DRY + P+ +
Sbjct: 97 FLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKM 147
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 57.8 bits (140), Expect = 1e-10
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 26 FLLCHFQVPLC---CLPGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPI 82
+ L GYF P C L ++ L ++++RY+ + P+
Sbjct: 85 LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM 144
Query: 83 KFGRNKTRKRVILKIAFVWLLSVAMSLPLSLMYSQVI 119
I+ +AF W++++A + P + +S+ I
Sbjct: 145 S-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYI 180
Score = 38.1 bits (89), Expect = 7e-04
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 130 MILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIK 176
+ GYF P C L ++ L ++++RY+ + P+
Sbjct: 99 SLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS 145
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane
protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A
1ho9_A 1hod_A
Length = 32
Score = 47.8 bits (114), Expect = 1e-08
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 61 TASIMHLCTISVDRYLSLKYPIKFGRNKTRKR 92
T+SI+HLC IS+DRY S+ I++ +T +R
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
Score = 41.3 bits (97), Expect = 3e-06
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 154 TASIMHLCTISVDRYLSLKYPIKFGR 179
T+SI+HLC IS+DRY S+ I++
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNL 26
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 52.4 bits (126), Expect = 1e-08
Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 33 VPLCCLP--------GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKF 84
+ + YC + ASI + ++ DRY+++ +P++
Sbjct: 81 MAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQP 140
Query: 85 GRNKTRKRVILKIAFVWLLSVAMSLPLSLMYSQVIQL 121
+ T +V+ I +W+L++ ++ P YS +
Sbjct: 141 RLSATATKVV--ICVIWVLALLLAFPQ-GYYSTTETM 174
Score = 35.0 bits (81), Expect = 0.009
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 130 MILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIK 176
+ + YC + ASI + ++ DRY+++ +P++
Sbjct: 93 AVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQ 139
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 52.1 bits (125), Expect = 2e-08
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 35 LCCLP--------GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGR 86
L LP G++P C T I +D S L +SVDRY+++ +PI+
Sbjct: 175 LLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALD 234
Query: 87 NKTRKRVILKIAFVWLLSVAMSLPLSLMYSQV 118
+T + +W L+ + +P+ +
Sbjct: 235 VRTSSKAQAVNVAIWALASVVGVPV-AIMGSA 265
Score = 29.8 bits (67), Expect = 0.43
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 130 MILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRY 180
++LG++P C T I +D S L +SVDRY+++ +PI+
Sbjct: 185 ILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDV 235
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 51.5 bits (123), Expect = 3e-08
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 35 LCCLP--------GYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGR 86
LP G +P + C I +D SI LCT+SVDRY+++ +P+K
Sbjct: 67 TSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALD 126
Query: 87 NKTRKRVILKIAFVWLLSVAMSLPLSLMYSQV 118
+T + + W+LS A+ LP+ + +
Sbjct: 127 FRTPRNAKIVNVCNWILSSAIGLPV-MFMATT 157
Score = 32.3 bits (73), Expect = 0.082
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 130 MILGYFPLPPVYCLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRY 180
++G +P + C I +D SI LCT+SVDRY+++ +P+K +
Sbjct: 77 YLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDF 127
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 48.8 bits (116), Expect = 2e-07
Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 49 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMS 108
C + + +S+ L IS+DRYL++ + R + + VW+ ++ ++
Sbjct: 119 CKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLT 178
Query: 109 LPLSLMYSQVIQ 120
+P +++ V +
Sbjct: 179 IP-DFIFANVSE 189
Score = 28.3 bits (63), Expect = 1.4
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 142 CLTWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRY 180
C + + +S+ L IS+DRYL++ + R
Sbjct: 119 CKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRP 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.048
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 101 WLLSVAMSLPLSLMYSQVIQLLHLDFGLIM--ILGYFP---LPPVYCLTWICLDVLFCTA 155
+LLS+ +S PL VIQL H ++ +LG+ P + T ++ TA
Sbjct: 230 YLLSIPISCPL----IGVIQLAHY---VVTAKLLGFTPGELRSYLKGATGHSQGLV--TA 280
Query: 156 SIM 158
+
Sbjct: 281 VAI 283
>2fj8_A BBBI, bowman-BIRK type trypsin inhibitor; all-beta, hydrolase
inhibitor; 1.19A {Hordeum vulgare} SCOP: g.3.13.1 PDB:
1tx6_I 1c2a_A
Length = 125
Score = 27.8 bits (61), Expect = 1.1
Identities = 11/35 (31%), Positives = 11/35 (31%)
Query: 34 PLCCLPGYFPLPPVYCLTWICLDVLFCTASIMHLC 68
C Y P C W C D CT S C
Sbjct: 48 RRICQDQYVGDPGPICRPWECCDKAICTRSNPPTC 82
>2ahm_E Replicase NSP8, replicase polyprotein 1AB, heavy chain; SARS-COV,
non-structural protein, S complex, hexadecamer, viral
protein, replication; 2.40A {Sars coronavirus} SCOP:
d.302.1.1
Length = 203
Score = 27.4 bits (60), Expect = 2.3
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 51 TWICLDVLFCTASIMHLCTISVDRYLSLKYPIKFGRNKTRKRVILK 96
W V+ + I+ L I++D +L +P+ + V L+
Sbjct: 158 LWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQ 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 4.4
Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 54/190 (28%)
Query: 6 TFYIGIDHLFIIFTHLQLLHFLLCHFQVPLCCLPGYFPLPPVYCLTWICLDVLFCTASIM 65
T +I +DH + T ++ LL + LP T +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-----------------REVLTTNPR 328
Query: 66 HLCTISVDRYLSLKYPIKFGRNKTRKRVILKIAFVWLLSVAMSLPLSLMYSQVIQLLHLD 125
L I+ S++ K V L+ + L+++ + +
Sbjct: 329 RLSIIA----ESIR--DGLATWDNWKHV-----NCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 126 FGLIMILGYFP----LPP-VYCLTWICLDVLFCTASIMHLC-------------TISV-D 166
+ FP +P + L W + +++ TIS+
Sbjct: 378 LSV------FPPSAHIPTILLSLIWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 167 RYLSLKYPIK 176
YL LK ++
Sbjct: 431 IYLELKVKLE 440
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.339 0.153 0.534
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,837,308
Number of extensions: 154981
Number of successful extensions: 453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 38
Length of query: 182
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,244,745
Effective search space: 399006030
Effective search space used: 399006030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 54 (25.0 bits)