BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17200
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 9 LGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQL 68
LGEN+F +SD + D K E A +W+ E++ N SR +GH+TQ+
Sbjct: 83 LGENIF-MSSDSGM--DKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRG-VGHYTQM 138
Query: 69 VWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVG 105
VW+++ LG YV + + VVC Y PAGN++G
Sbjct: 139 VWQETVKLGC----YVEACSNMCYVVCQYGPAGNMMG 171
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 8 KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQ 67
++G+N+ T S DPVK+V+ W E+ YN P + GH+TQ
Sbjct: 113 QVGQNVALTGSTAAKYDDPVKLVK----MWEDEVKDYN----PKKKFSGNDFLKTGHYTQ 164
Query: 68 LVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGN 102
+VW +++ +G G +Y+ + +VCNY P+GN
Sbjct: 165 MVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGN 199
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 23/117 (19%)
Query: 1 MKHSTGT---KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDT 57
+KHS + + GENL + D + ++ D WYSEI YN + P +
Sbjct: 52 LKHSPESSRGQXGENLAWASYD--------QTGKEVADRWYSEIKNYN-FQQPGFTS--- 99
Query: 58 SRFCIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVV--GLYASNVL 112
GHFT +VW++++ +G G + +G++ VV Y PAGNVV G + NVL
Sbjct: 100 ---GTGHFTAMVWKNTKKMGVGKAS-ASDGSS--FVVARYFPAGNVVNEGFFEENVL 150
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 23/117 (19%)
Query: 1 MKHSTGT---KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDT 57
+KHS + + GENL + D + ++ D WYSEI YN + P +
Sbjct: 52 LKHSPESSRGQCGENLAWASYD--------QTGKEVADRWYSEIKNYN-FQQPGFTS--- 99
Query: 58 SRFCIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVV--GLYASNVL 112
GHFT +VW++++ +G G + +G++ VV Y PAGNVV G + NVL
Sbjct: 100 ---GTGHFTAMVWKNTKKMGVGKAS-ASDGSS--FVVARYFPAGNVVNEGFFEENVL 150
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 12 NLFKTASDDHLIKDPVKVV-EDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVW 70
NL + + ++L K AV W SE +YN Y + R H+TQ+VW
Sbjct: 45 NLIHSGAGENLAKGGGDFTGRAAVQLWVSERPSYN-YATNQCVGGKKCR----HYTQVVW 99
Query: 71 RDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVG 105
R+S LG G +R NG + + CNYDP GN +G
Sbjct: 100 RNSVRLGCGRAR-CNNGW--WFISCNYDPVGNWIG 131
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 8 KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQ 67
+ GEN+F ++ V +WY EI + YG I IGH+TQ
Sbjct: 63 RCGENIFMSSQPFPW--------SGVVQAWYDEIKNF-VYG----IGAKPPGSVIGHYTQ 109
Query: 68 LVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEGPPEVFC 127
+VW S +G ++ ++ Y+ VC Y PAGN+ G A+ GPP C
Sbjct: 110 VVWYKSHLIGCASAKC---SSSKYLYVCQYCPAGNIRGSIATPY-------KSGPPCADC 159
Query: 128 PRRTV 132
P V
Sbjct: 160 PSACV 164
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 8 KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQ 67
+ GEN+F ++ V +WY EI + YG I IGH+TQ
Sbjct: 64 RCGENIFMSSQPFPW--------SGVVQAWYDEIKNF-VYG----IGAKPPGSVIGHYTQ 110
Query: 68 LVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEGPPEVFC 127
+VW S +G ++ ++ Y+ VC Y PAGN+ G A+ GPP C
Sbjct: 111 VVWYKSYLIGCASAKC---SSSKYLYVCQYCPAGNIRGSIATPY-------KSGPPCADC 160
Query: 128 PRRTV 132
P V
Sbjct: 161 PSACV 165
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 9 LGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQL 68
+G+N+ T+S P + + WY+E+ +++ + D +GH+TQ+
Sbjct: 111 VGQNIAATSSSGKNKSTP----NEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHYTQI 166
Query: 69 VWRDSRYLGFGISRYVY----NGTAVYIVVCNYDPAGNVVG 105
VW + +G G R ++ N T Y+ VCNY PAGNV+G
Sbjct: 167 VWAKTTKIGCG--RIMFKEPDNWTKHYL-VCNYGPAGNVLG 204
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 6 GTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHF 65
G K GEN++ + P K D + +W+ E + YG + S IGH+
Sbjct: 70 GIKCGENIY-------MATYPAKWT-DIIHAWHGEYKDFK-YG----VGAVPSDAVIGHY 116
Query: 66 TQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEGPPEV 125
TQ+VW S G + Y + Y VC Y PAGN++G A+ GPP
Sbjct: 117 TQIVWYKSYRAGCAAA-YCPSSKYSYFYVCQYCPAGNIIGKTATPY-------KSGPPCG 168
Query: 126 FCP 128
CP
Sbjct: 169 DCP 171
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 6 GTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHF 65
G K GEN++ + P+K D + +W+ E + YG + D GH+
Sbjct: 70 GIKCGENIY-------MSPYPMKWT-DIIHAWHDEYKDF-KYG----VGADPPNAVTGHY 116
Query: 66 TQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYAS 109
TQ+VW S +G + Y + Y VC Y PAGN +G A+
Sbjct: 117 TQIVWYKSYRIGCAAA-YCPSSPYSYFFVCQYCPAGNFIGKTAT 159
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 25/108 (23%)
Query: 3 HSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCI 62
H T LGEN++ + P+ V A+ +WY EI Y+ T +
Sbjct: 75 HPNFTSLGENIWTGSV-------PIFSVSSAITNWYDEIQDYD-------FKTRICKKVC 120
Query: 63 GHFTQLVWRDSRYLGFGISRY--------VYNGTAVYIVVCNYDPAGN 102
GH+TQ+VW DS +G + + NG +CNY P GN
Sbjct: 121 GHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAH---FICNYGPGGN 165
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 9 LGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINT---DTSRFCIGHF 65
LGEN++KT+ L D K + A W++E+ Y G + + T + IGH+
Sbjct: 304 LGENIYKTSV---LKFDKNKAAKQASQLWWNELKEYG-VGPSNVLTTALWNRPNMQIGHY 359
Query: 66 TQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVG 105
TQ+ W + LG + V+ + VC Y P GN +G
Sbjct: 360 TQMAWDTTYKLGCAV---VFCNDFTF-GVCQYGPGGNYMG 395
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 63 GHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEGP 122
GH+TQ+VW + G +S Y + Y VC Y P+GN G A+ GP
Sbjct: 114 GHYTQIVWYQTYRAGCAVS-YCPSSAWSYFYVCQYCPSGNFQGKTATPY-------KLGP 165
Query: 123 PEVFCP 128
P CP
Sbjct: 166 PCGDCP 171
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 63 GHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEGP 122
GH+TQ+VW + G +S Y + Y VC Y P+GN G A+ GP
Sbjct: 114 GHYTQIVWYQTYRAGCAVS-YCPSSAWSYFYVCQYCPSGNFQGKTATPY-------KLGP 165
Query: 123 PEVFCP 128
P CP
Sbjct: 166 PCGDCP 171
>pdb|1UV4|A Chain A, Native Bacillus Subtilis Arabinanase Arb43a
Length = 293
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 19/152 (12%)
Query: 11 ENLFKTASDDHLIKDPVKVVEDAVDSWYS-EISTYNDYGNPDTINTDTSRFCIGH---FT 66
E F AS++ L+ DP + E + SWY+ + G ++D + + T
Sbjct: 1 EAAFWGASNE-LLHDPTMIKEGS--SWYALGTGLTEERGLRVLKSSDAKNWTVQKSIFTT 57
Query: 67 QLVWRDSRYLGFGISRYV-----YNGT-AVYIVVCNYDPAGNVVGLYASNVLKEGDWDDE 120
L W + +G +++ YNG +Y V ++ + +GL +S + G W DE
Sbjct: 58 PLSWWSNYVPNYGQNQWAPDIQYYNGKYWLYYSVSSFGSNTSAIGLASSTSISSGGWKDE 117
Query: 121 GPPEVFCPRRTVYPHANDTQPPETYFHDDDGN 152
G R T + N P T+ D DGN
Sbjct: 118 G----LVIRSTSSNNYNAIDPELTF--DKDGN 143
>pdb|1POI|B Chain B, Crystal Structure Of Glutaconate Coenzyme A-transferase
From Acidaminococcus Fermentans To 2.55 Angstoms
Resolution
pdb|1POI|D Chain D, Crystal Structure Of Glutaconate Coenzyme A-transferase
From Acidaminococcus Fermentans To 2.55 Angstoms
Resolution
Length = 260
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 69 VWRDSRYLGFGISRYVY--NGTAVYIVVCNYDPAGNV 103
+W + R++GF I+ Y++ N +I DP GNV
Sbjct: 79 IWPNVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNV 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,499,695
Number of Sequences: 62578
Number of extensions: 293726
Number of successful extensions: 703
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 17
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)