Query psy17200
Match_columns 177
No_of_seqs 153 out of 1188
Neff 8.0
Searched_HMMs 46136
Date Sat Aug 17 00:28:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3017|consensus 99.9 1.3E-23 2.8E-28 166.6 9.4 116 6-132 95-212 (225)
2 cd05381 SCP_PR-1_like SCP_PR-1 99.9 1.1E-21 2.4E-26 144.1 9.9 87 8-108 49-135 (136)
3 cd05384 SCP_PRY1_like SCP_PRY1 99.9 4.3E-21 9.3E-26 139.8 9.7 84 2-105 46-129 (129)
4 cd05382 SCP_GAPR-1_like SCP_GA 99.8 1.1E-20 2.4E-25 137.8 7.9 88 1-103 45-132 (132)
5 smart00198 SCP SCP / Tpx-1 / A 99.8 2.3E-20 4.9E-25 138.0 8.8 93 1-100 52-144 (144)
6 cd05385 SCP_GLIPR-1_like SCP_G 99.8 2.7E-20 5.9E-25 138.2 7.8 79 7-99 63-143 (144)
7 cd05383 SCP_CRISP SCP_CRISP: S 99.8 6.3E-20 1.4E-24 135.3 7.4 79 8-100 60-138 (138)
8 cd05559 SCP_HrTT-1 SCP_HrTT-1: 99.8 1.6E-19 3.4E-24 132.9 7.2 86 1-98 44-136 (136)
9 cd05380 SCP_euk SCP_euk: SCP-l 99.8 3.2E-18 6.9E-23 125.8 9.1 90 2-98 52-144 (144)
10 cd00168 SCP SCP: SCP-like extr 99.7 2.9E-17 6.2E-22 118.3 8.4 80 1-98 40-122 (122)
11 PF00188 CAP: Cysteine-rich se 99.0 1.3E-09 2.8E-14 75.7 7.9 83 7-97 42-124 (124)
12 TIGR02909 spore_YkwD uncharact 96.9 0.0027 5.8E-08 45.9 5.9 46 8-84 70-115 (127)
13 cd05379 SCP_bacterial SCP_bact 96.7 0.0056 1.2E-07 42.8 5.7 44 10-84 68-111 (122)
14 PF02978 SRP_SPB: Signal pepti 43.8 3 6.5E-05 29.2 -2.1 24 152-175 59-82 (104)
15 PRK10721 hypothetical protein; 27.0 55 0.0012 21.0 1.9 32 34-72 32-63 (66)
16 PF13652 DUF4146: Domain of un 25.4 36 0.00078 23.7 0.9 11 165-175 75-85 (112)
17 PLN03221 rapid alkalinization 22.6 78 0.0017 23.1 2.2 23 121-145 103-125 (137)
No 1
>KOG3017|consensus
Probab=99.90 E-value=1.3e-23 Score=166.55 Aligned_cols=116 Identities=31% Similarity=0.406 Sum_probs=88.9
Q ss_pred CCCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEEEEeec
Q psy17200 6 GTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGISRYVY 85 (177)
Q Consensus 6 ~~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~~~c~~ 85 (177)
...+||||++.++.. ...+.......+++.|+.|...|+ +..+.+. ....+..+||||||||+++++||||+++|..
T Consensus 95 ~~~~GeNl~~~~~~~-~~~~~~~~~~~a~~~w~~e~~~~~-~~~~~~~-~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~ 171 (225)
T KOG3017|consen 95 FGPYGENLAWGWSSN-PPLSLDTSGALAVEAWESEFQEYD-WSSNTCS-SADFGEGIGHYTQMVWAKSTKVGCGVVRCGN 171 (225)
T ss_pred CCCCcccceeeccCC-CCccccccHHHHHHHHHHHHHHcc-CcccccC-cccCCCcceEEEEEEEeCCceeceeeccCCC
Confidence 456799998777641 123334667889999999999999 7766542 2234788999999999999999999999965
Q ss_pred CC--CeEEEEEEEeeCCCccCCccccccCCCCCCcCCCCCCCCCCCCCC
Q psy17200 86 NG--TAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEGPPEVFCPRRTV 132 (177)
Q Consensus 86 ~~--~~~~~vVC~Y~p~GN~~g~~~~nv~~~~~yy~~G~pcs~C~~~~~ 132 (177)
+. ...+++||+|+|.||..+. ..+|..|++||.||.++.
T Consensus 172 ~~~~~~~~~~vC~Y~p~g~~~~~--------~~~y~~g~~cs~Cp~~~~ 212 (225)
T KOG3017|consen 172 GSNGYNTVAVVCNYDPPGNNING--------EIPYKGGKPCSACPSGTS 212 (225)
T ss_pred CCCCcceEEEEEEeecCCCCcCC--------CCcCCCCCccCCCCCCCC
Confidence 53 2368999999998665542 124788999999997765
No 2
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.87 E-value=1.1e-21 Score=144.10 Aligned_cols=87 Identities=36% Similarity=0.632 Sum_probs=69.4
Q ss_pred CcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEEEEeecCC
Q psy17200 8 KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGISRYVYNG 87 (177)
Q Consensus 8 ~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~~~c~~~~ 87 (177)
.+||||+..... ...+.++|+.||+|.+.|+ +..+.+ ..+..++|||||||+++++||||++.|...+
T Consensus 49 ~~GeNi~~~~~~-------~~~~~~~v~~W~~e~~~y~-~~~~~~----~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~ 116 (136)
T cd05381 49 PYGENLFWGSGG-------NWSAADAVASWVSEKKYYD-YDSNTC----AAGKMCGHYTQVVWRNTTRVGCARVTCDNGG 116 (136)
T ss_pred CCCceEEEecCC-------CCCHHHHHHHHHhccccCC-CCCCCc----CCCccchHHHHHHHHhcCEeceEEEEeCCCC
Confidence 489999865443 2346789999999999999 765432 2346799999999999999999999995433
Q ss_pred CeEEEEEEEeeCCCccCCccc
Q psy17200 88 TAVYIVVCNYDPAGNVVGLYA 108 (177)
Q Consensus 88 ~~~~~vVC~Y~p~GN~~g~~~ 108 (177)
..+|||+|+|+||+.|+.+
T Consensus 117 --~~~vvC~Y~p~gn~~g~~~ 135 (136)
T cd05381 117 --GVFIICNYDPPGNYIGQRP 135 (136)
T ss_pred --cEEEEEEeeCCCCCCCCCC
Confidence 3689999999999999643
No 3
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=99.85 E-value=4.3e-21 Score=139.80 Aligned_cols=84 Identities=44% Similarity=0.779 Sum_probs=67.3
Q ss_pred CCCCCCCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEEE
Q psy17200 2 KHSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGIS 81 (177)
Q Consensus 2 ~hs~~~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~~ 81 (177)
.|+.. .+||||+..+. .++++|+.|++|.++|+ |..+. .+..++|||||||+++++||||++
T Consensus 46 ~~~~~-~~geNi~~~~~----------~~~~~v~~W~~e~~~y~-~~~~~------~~~~~~h~tqmvw~~t~~vGCa~~ 107 (129)
T cd05384 46 AHSGG-PYGENLAAGYP----------SGTSAVDAWYDEIEDYD-YSNPG------FSEATGHFTQLVWKSTTQVGCAYK 107 (129)
T ss_pred ecCCC-CCCcEEEEecC----------CHHHHHHHHHhhhhhCC-CCCCC------CCCcccchhhhhhhccceeeeEEE
Confidence 45554 48999986532 26789999999999999 76542 256789999999999999999999
Q ss_pred EeecCCCeEEEEEEEeeCCCccCC
Q psy17200 82 RYVYNGTAVYIVVCNYDPAGNVVG 105 (177)
Q Consensus 82 ~c~~~~~~~~~vVC~Y~p~GN~~g 105 (177)
.|.. .. .++|||+|+|+||+.|
T Consensus 108 ~c~~-~~-~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 108 DCGG-AW-GWYIVCEYDPAGNVIG 129 (129)
T ss_pred EeCC-CC-eEEEEEEEECCCCCCc
Confidence 9953 22 4789999999999864
No 4
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=99.83 E-value=1.1e-20 Score=137.79 Aligned_cols=88 Identities=43% Similarity=0.764 Sum_probs=70.7
Q ss_pred CCCCCCCCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEE
Q psy17200 1 MKHSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGI 80 (177)
Q Consensus 1 ~~hs~~~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~ 80 (177)
+.|++...+||||+..... .....++++|+.|++|.++|+ +..+. ....++|||||||+++++||||+
T Consensus 45 ~~h~~~~~~GeN~~~~~~~-----~~~~~~~~~v~~W~~e~~~y~-~~~~~------~~~~~gh~tqmvw~~t~~vGCa~ 112 (132)
T cd05382 45 LQHSSPSGYGENLAYASGS-----GPDLTGEEAVDSWYNEIKKYD-FNKPG------FSSKTGHFTQVVWKSSTELGVGV 112 (132)
T ss_pred eeCCCCCCCCceeEEecCC-----CCCCCHHHHHHHHHhccccCC-CCCCC------CCCCCCCeEEeEecCCCceeeEE
Confidence 3577766799999876542 124578899999999999999 76332 25679999999999999999999
Q ss_pred EEeecCCCeEEEEEEEeeCCCcc
Q psy17200 81 SRYVYNGTAVYIVVCNYDPAGNV 103 (177)
Q Consensus 81 ~~c~~~~~~~~~vVC~Y~p~GN~ 103 (177)
+.|.. + .+++||+|+|+||+
T Consensus 113 ~~~~~-~--~~~~vC~Y~p~Gn~ 132 (132)
T cd05382 113 AKSKK-G--CVYVVARYRPAGNV 132 (132)
T ss_pred EEcCC-C--CEEEEEEEeCCCCC
Confidence 99943 2 36899999999985
No 5
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=99.83 E-value=2.3e-20 Score=138.02 Aligned_cols=93 Identities=35% Similarity=0.601 Sum_probs=72.6
Q ss_pred CCCCCCCCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEE
Q psy17200 1 MKHSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGI 80 (177)
Q Consensus 1 ~~hs~~~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~ 80 (177)
+.|++...+||||++.... ..+....++.+|+.||+|.++|+ +....... .+..++|||||||+++++||||+
T Consensus 52 ~~~~~~~~~GeNi~~~~~~---~~~~~~~~~~av~~W~~e~~~y~-~~~~~~~~---~~~~~~hftqmvw~~s~~vGCa~ 124 (144)
T smart00198 52 FGHSTPRGYGENLAWWSSS---TDLPITYASAAVQLWYDEFQDYG-YSSNTCKD---TNGKIGHYTQVVWAKTYKVGCGV 124 (144)
T ss_pred CcCCCcCCcCcceEEeccc---CcccchhHHHHHHHHHHHHHHcC-CCCCcccc---CccchhHHHHHHHHhcCCcceEE
Confidence 3577766899999766543 23456789999999999999999 76654311 25779999999999999999999
Q ss_pred EEeecCCCeEEEEEEEeeCC
Q psy17200 81 SRYVYNGTAVYIVVCNYDPA 100 (177)
Q Consensus 81 ~~c~~~~~~~~~vVC~Y~p~ 100 (177)
+.|..+....++|||+|+|+
T Consensus 125 ~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 125 SNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred EECCCCCcceEEEEEecCCC
Confidence 99964433357899999983
No 6
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.82 E-value=2.7e-20 Score=138.21 Aligned_cols=79 Identities=33% Similarity=0.597 Sum_probs=63.6
Q ss_pred CCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEEEEeecC
Q psy17200 7 TKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGISRYVYN 86 (177)
Q Consensus 7 ~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~~~c~~~ 86 (177)
..+||||+..... ...+.++|+.||+|.++|+ |..+.+ ...++|||||||+++++||||++.|...
T Consensus 63 ~~~GeNi~~~~~~-------~~~~~~av~~W~~e~~~y~-~~~~~~------~~~~ghftqmvw~~t~~vGCa~~~c~~~ 128 (144)
T cd05385 63 TSVGENIWLGSIY-------IFSPKNAVTSWYNEGKFYD-FDTNSC------SRVCGHYTQVVWATSYKVGCAVAFCPNL 128 (144)
T ss_pred CcccceeeecccC-------CCCHHHHHHHHHHHHHhCC-CCCCCC------CCcccCHHHHHHhhccccceEEEECCCC
Confidence 4689999765433 2468899999999999999 765432 4579999999999999999999999653
Q ss_pred C--CeEEEEEEEeeC
Q psy17200 87 G--TAVYIVVCNYDP 99 (177)
Q Consensus 87 ~--~~~~~vVC~Y~p 99 (177)
+ ...++|||+|+|
T Consensus 129 ~~~~~~~~vVC~Y~p 143 (144)
T cd05385 129 GGIPNAAIFVCNYAP 143 (144)
T ss_pred CCccccEEEEEeCCC
Confidence 3 124789999998
No 7
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=99.81 E-value=6.3e-20 Score=135.31 Aligned_cols=79 Identities=30% Similarity=0.662 Sum_probs=62.9
Q ss_pred CcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEEEEeecCC
Q psy17200 8 KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGISRYVYNG 87 (177)
Q Consensus 8 ~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~~~c~~~~ 87 (177)
.+||||+..... ..+.++|+.||+|.++|+ |.... +..+..++|||||||+++++||||++.|..+
T Consensus 60 ~~GeNl~~~~~~--------~~~~~av~~W~~e~~~y~-~~~~~----~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~- 125 (138)
T cd05383 60 TCGENIFMSSYP--------RSWSDVIQAWYDEYKDFK-YGVGA----TPPGAVVGHYTQIVWYKSYLVGCAVAYCPNS- 125 (138)
T ss_pred CcceeeeccCCC--------CCHHHHHHHHHHHHHhCC-CCCCC----CCCCCchhhHHHHHHHhccccceEEEECCCC-
Confidence 579999865433 246789999999999999 76543 1346789999999999999999999999543
Q ss_pred CeEEEEEEEeeCC
Q psy17200 88 TAVYIVVCNYDPA 100 (177)
Q Consensus 88 ~~~~~vVC~Y~p~ 100 (177)
...++|||+|+|+
T Consensus 126 ~~~~~~vC~Y~P~ 138 (138)
T cd05383 126 KYKYFYVCHYCPA 138 (138)
T ss_pred CcCEEEEEecCCC
Confidence 2247899999983
No 8
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.79 E-value=1.6e-19 Score=132.92 Aligned_cols=86 Identities=29% Similarity=0.522 Sum_probs=65.9
Q ss_pred CCCCCCC---CcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEE
Q psy17200 1 MKHSTGT---KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLG 77 (177)
Q Consensus 1 ~~hs~~~---~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VG 77 (177)
+.|++.. .+||||+...+. ...+.++|+.||+|.++|+ |....+ ..+..++|||||||+++++||
T Consensus 44 ~~~~~~~~~~~~GeNl~~~~~~-------~~~~~~~v~~W~~e~~~y~-~~~~~~----~~~~~~~hftqmvw~~t~~vG 111 (136)
T cd05559 44 WDHNPDRGHLRVGENLFISTGP-------PFDATKAVEDWNNEKLDYN-YNTNTC----APNKMCGHYTQVVWANTFKIG 111 (136)
T ss_pred ccCCCcccCCCceeeeeecCCC-------CCCHHHHHHHHHHHHHhcC-CCCCCC----CCCCcccchHHHHHhccCccc
Confidence 3566633 699999866543 2457889999999999999 765432 235679999999999999999
Q ss_pred EEEEEeecCCC----eEEEEEEEee
Q psy17200 78 FGISRYVYNGT----AVYIVVCNYD 98 (177)
Q Consensus 78 Ca~~~c~~~~~----~~~~vVC~Y~ 98 (177)
||++.|..... ..++|||+|+
T Consensus 112 Ca~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 112 CGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred eEEEECCCCCCCCcccCEEEEecCC
Confidence 99999954321 2478999995
No 9
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.76 E-value=3.2e-18 Score=125.78 Aligned_cols=90 Identities=36% Similarity=0.680 Sum_probs=70.2
Q ss_pred CCCCCC---CcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEE
Q psy17200 2 KHSTGT---KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGF 78 (177)
Q Consensus 2 ~hs~~~---~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGC 78 (177)
.|+... .+||||+...... .+....++++|+.||+|.+.|+ +... ........++|||||||+++++|||
T Consensus 52 ~~~~~~~~~~~GeNl~~~~~~~---~~~~~~~~~~v~~W~~e~~~~~-~~~~---~~~~~~~~~~hftq~vw~~t~~vGC 124 (144)
T cd05380 52 EHSPCRNTGGVGQNLAAGSSTG---STVEELAEDAVNAWYNELKDYG-FGSN---PTNNFNSGIGHFTQMVWAKTTKVGC 124 (144)
T ss_pred cCCcccCCCCCCcEEEEeccCC---CCHHHHHHHHHHHHHHHHHHcC-CCcC---cccccccchhHHHHHHHHhcCccce
Confidence 566543 7999998776541 2456789999999999999999 7653 2223467899999999999999999
Q ss_pred EEEEeecCCCeEEEEEEEee
Q psy17200 79 GISRYVYNGTAVYIVVCNYD 98 (177)
Q Consensus 79 a~~~c~~~~~~~~~vVC~Y~ 98 (177)
|++.|...+....+|||+|+
T Consensus 125 a~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 125 AVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred EEEEeecCCceEEEEEecCC
Confidence 99999654334689999995
No 10
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=99.72 E-value=2.9e-17 Score=118.30 Aligned_cols=80 Identities=40% Similarity=0.736 Sum_probs=63.4
Q ss_pred CCCCCC---CCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEE
Q psy17200 1 MKHSTG---TKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLG 77 (177)
Q Consensus 1 ~~hs~~---~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VG 77 (177)
+.|++. ..+||||+..... ..+..+|+.|++|.++|+ |.... .+..++||+||||+++++||
T Consensus 40 ~~h~~~~~~~~~geNi~~~~~~--------~~~~~~v~~W~~e~~~y~-~~~~~------~~~~~~h~~qmvw~~s~~vG 104 (122)
T cd00168 40 FKHSGEDGRGFVGENLAAGSYD--------MTGPAAVQAWYNEIKNYN-FGQPG------FSSGTGHYTQVVWKNTTKIG 104 (122)
T ss_pred ccCCCcccCCCCCceeEEecCC--------CCHHHHHHHHHHHHHhCC-CCCCC------CCCCccchhhhhcccCCeee
Confidence 357663 3689999876542 357899999999999999 76432 25678999999999999999
Q ss_pred EEEEEeecCCCeEEEEEEEee
Q psy17200 78 FGISRYVYNGTAVYIVVCNYD 98 (177)
Q Consensus 78 Ca~~~c~~~~~~~~~vVC~Y~ 98 (177)
||++.|.. + ..++||+|.
T Consensus 105 ca~~~~~~-~--~~~~vC~Y~ 122 (122)
T cd00168 105 CGVAFCGS-N--SYYVVCNYG 122 (122)
T ss_pred eEEEEcCC-C--CEEEEEeCc
Confidence 99999943 3 368999995
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.03 E-value=1.3e-09 Score=75.66 Aligned_cols=83 Identities=30% Similarity=0.522 Sum_probs=54.5
Q ss_pred CCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEEEEeecC
Q psy17200 7 TKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGISRYVYN 86 (177)
Q Consensus 7 ~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~~~c~~~ 86 (177)
...|+|+...... .........+++.|+.+...+. +.....+. .....++||+||+|..+++||||++.|...
T Consensus 42 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~h~~~ll~~~~~~iGca~~~~~~~ 114 (124)
T PF00188_consen 42 HDSGENGSQSSRF----GSYSDAQVTAVENWYSESKNYN-FQNQSIFN--SWMNSPGHFTNLLWPNTTRIGCAVANCPNG 114 (124)
T ss_dssp EESEEEEEEESST----TSHHHHHHHHHHHHHGGGGGEE-TTCSTEES--STTSTCHHHHHHT-TT--EEEEEEEEETTS
T ss_pred cccCCCCcccccc----ccccchhhHHHHHHHhcccccc-cccchhhh--ccCCchhhhhhhhcCCCCEEEEEEEEeCCC
Confidence 4468888655443 2223333333899999999988 54211111 225667999999999999999999999544
Q ss_pred CCeEEEEEEEe
Q psy17200 87 GTAVYIVVCNY 97 (177)
Q Consensus 87 ~~~~~~vVC~Y 97 (177)
.. .+++||+|
T Consensus 115 ~~-~~~~vc~y 124 (124)
T PF00188_consen 115 KN-NYYWVCNY 124 (124)
T ss_dssp SS-EEEEEEEE
T ss_pred Ce-eEEEEEEC
Confidence 33 48999998
No 12
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=96.94 E-value=0.0027 Score=45.90 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=35.3
Q ss_pred CcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEEEEee
Q psy17200 8 KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGISRYV 84 (177)
Q Consensus 8 ~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~~~c~ 84 (177)
.+||||..... ....+++.|++. .+|+.+|+|...+++|+|++.+.
T Consensus 70 ~~gENi~~g~~----------~~~~~v~~W~~S---------------------~gH~~nil~~~~~~~Gvg~~~~~ 115 (127)
T TIGR02909 70 MAGENIAYGNS----------TVEAVHNAWMNS---------------------PGHRANILNPNYTEIGVGYVEGG 115 (127)
T ss_pred cceeeeeccCC----------CHHHHHHHHHcC---------------------HhHHHHHcCCCcCeEeEEEEeCC
Confidence 46999974432 256788899631 37999999999999999999873
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=96.66 E-value=0.0056 Score=42.83 Aligned_cols=44 Identities=32% Similarity=0.448 Sum_probs=33.8
Q ss_pred ccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEEEEee
Q psy17200 10 GENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGISRYV 84 (177)
Q Consensus 10 GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~~~c~ 84 (177)
|||+..... ...++++.|+++ .+|+.+|+|...+++|||+....
T Consensus 68 ~eni~~~~~----------~~~~~~~~w~~~---------------------~~H~~~ll~~~~~~~Gvg~~~~~ 111 (122)
T cd05379 68 GENIAYGYS----------TAEAAVDGWMNS---------------------PGHRANILNPDYTEVGVGVAYGG 111 (122)
T ss_pred chhhcccCC----------CHHHHHHHHhCC---------------------HhHHHHHcCCCcceeeEEEEeCC
Confidence 788753322 466888889531 37999999999999999999873
No 14
>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....
Probab=43.78 E-value=3 Score=29.16 Aligned_cols=24 Identities=17% Similarity=-0.010 Sum_probs=20.4
Q ss_pred CceeecceEEEechhhhHhhhhcC
Q psy17200 152 NIIDLEGNVYVDTARYYLQRRANG 175 (177)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~ 175 (177)
.||+++|..+--...-+|.++|+|
T Consensus 59 SMT~~Er~~p~ll~~sR~~RIA~G 82 (104)
T PF02978_consen 59 SMTPEERDNPKLLNESRRRRIARG 82 (104)
T ss_dssp TSBHHHHHCGGGHHHHHHHHHHHH
T ss_pred CcCHHHHhCccccchHHHHHHHHH
Confidence 789999988777777899999987
No 15
>PRK10721 hypothetical protein; Provisional
Probab=27.00 E-value=55 Score=20.96 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=22.4
Q ss_pred HHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhc
Q psy17200 34 VDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRD 72 (177)
Q Consensus 34 v~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~ 72 (177)
+..|--+...|+ =+.. ..+..+-...||+|-.
T Consensus 32 L~~wV~~L~~Fd-Ddp~------~~~EkiLEAIQ~aWie 63 (66)
T PRK10721 32 MHQWICELEDFD-DDPQ------ASNEKILEAILLVWLD 63 (66)
T ss_pred HHHHHHhCcCcC-CCcc------cccHHHHHHHHHHHHH
Confidence 457888887777 3322 2377888999999953
No 16
>PF13652 DUF4146: Domain of unknown function (DUF4146); PDB: 3NPD_A.
Probab=25.38 E-value=36 Score=23.68 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=7.8
Q ss_pred hhhhHhhhhcC
Q psy17200 165 ARYYLQRRANG 175 (177)
Q Consensus 165 ~~~~~~~~~~~ 175 (177)
.++||+++|+|
T Consensus 75 N~gyR~LmakG 85 (112)
T PF13652_consen 75 NPGYRKLMAKG 85 (112)
T ss_dssp -HHHHHHHTTT
T ss_pred CccHHHHHhCC
Confidence 46788888877
No 17
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=22.62 E-value=78 Score=23.09 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCce
Q psy17200 121 GPPEVFCPRRTVYPHANDTQPPETY 145 (177)
Q Consensus 121 G~pcs~C~~~~~y~~~~~~~p~~~~ 145 (177)
-.||+ ..+..|.+|.++.|+|+|
T Consensus 103 ~vPCs--rrG~SYynC~~~~pANPY 125 (137)
T PLN03221 103 TIPCS--RRGASYYNCRRGAQANPY 125 (137)
T ss_pred CCCCC--CCCCCccccCCCCCCCCC
Confidence 35776 477889999988888877
Done!