Query psy17200
Match_columns 177
No_of_seqs 153 out of 1188
Neff 8.0
Searched_HMMs 29240
Date Sat Aug 17 00:28:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nt8_A Ancylostoma secreted pr 100.0 3.4E-31 1.2E-35 226.3 9.8 156 1-176 91-256 (424)
2 1u53_A Secreted protein Asp-2; 99.9 5.7E-28 2E-32 186.9 9.0 111 1-128 72-185 (196)
3 2ddb_A Pseudecin, channel bloc 99.9 2.3E-27 7.7E-32 185.8 10.0 114 1-137 49-169 (210)
4 1xta_A Natrin 1; crisp, serine 99.9 2.3E-27 7.7E-32 187.1 8.9 116 1-137 58-180 (221)
5 3q2u_A Glioma pathogenesis-rel 99.9 7.2E-27 2.5E-31 181.9 11.0 101 6-130 78-183 (205)
6 4aiw_A Golgi-associated plant 99.9 5.4E-27 1.9E-31 175.4 9.7 95 1-113 52-151 (154)
7 3u3l_C Tablysin 15; CAP domain 99.9 1.8E-26 6E-31 183.1 11.7 110 7-130 102-212 (233)
8 3nt8_A Ancylostoma secreted pr 99.9 9.9E-25 3.4E-29 186.3 13.2 114 1-131 293-412 (424)
9 1cfe_A Pathogenesis-related pr 99.9 2.6E-24 8.9E-29 157.4 7.5 89 1-108 46-134 (135)
10 2vzn_A Venom allergen 3; major 99.9 1.1E-23 3.8E-28 165.5 8.9 105 1-111 98-210 (218)
11 1qnx_A VES V 5, antigen 5; all 99.9 1E-22 3.4E-27 159.0 10.3 100 1-108 101-205 (209)
12 3s6s_A AC-Asp-7; pathogenesis- 99.9 1.6E-22 5.4E-27 157.5 9.5 122 10-165 74-202 (206)
13 3u3l_C Tablysin 15; CAP domain 95.6 0.0019 6.4E-08 50.3 -0.2 50 127-176 9-59 (233)
14 1qnx_A VES V 5, antigen 5; all 95.1 0.0012 4E-08 50.6 -2.8 48 127-175 13-63 (209)
15 4ifa_A Extracellular protein c 95.1 0.029 9.8E-07 46.3 5.2 43 8-81 286-328 (339)
16 2vzn_A Venom allergen 3; major 93.8 0.005 1.7E-07 47.4 -1.9 26 151-176 36-61 (218)
17 4h0a_A Uncharacterized protein 73.3 3 0.0001 33.9 3.8 44 7-81 269-312 (323)
18 1dul_A Signal recognition part 50.2 1.2 4.2E-05 27.9 -2.1 24 152-175 21-44 (69)
19 1hq1_A Signal recognition part 37.8 2.7 9.1E-05 28.6 -2.1 24 152-175 55-78 (105)
20 2jqe_A SRP54, signal recogniti 25.3 5.6 0.00019 27.6 -2.2 24 152-175 64-87 (119)
21 1qb2_A SRP54, human signal rec 24.6 4.6 0.00016 27.6 -2.7 24 152-175 56-84 (109)
22 3npd_A Putative secreted prote 23.7 26 0.00087 23.7 0.9 11 165-175 76-86 (118)
23 1mfq_C SRP54, signal recogniti 21.4 6.5 0.00022 27.6 -2.5 24 152-175 69-97 (129)
No 1
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}
Probab=99.97 E-value=3.4e-31 Score=226.33 Aligned_cols=156 Identities=13% Similarity=0.177 Sum_probs=121.6
Q ss_pred CCCCCCCCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEE
Q psy17200 1 MKHSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGI 80 (177)
Q Consensus 1 ~~hs~~~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~ 80 (177)
+.|+....+||||+...... ...+....++++|+.||+|+++|+ +..... + .+..++|||||||+++++||||+
T Consensus 91 ~~h~~~~~~GeNl~~~~~~~-~~~~~~~~~~~~v~~W~~E~~~y~-~~~~~~---~-~~~~~ghfTqmvw~~t~~vGCa~ 164 (424)
T 3nt8_A 91 SGFAGIQGVAQNTMSWSSSG-GYPDPSVKIEPTLSGWWSGAKKNG-VGPDNK---Y-TGGGLFAFSNMVYSETTKLGCAY 164 (424)
T ss_dssp SSCCCCTTCEEEEEEEECTT-CCSCGGGGHHHHHHHHHTHHHHHC-CCTTCB---C-CCTTCHHHHHHHCTTCCEEEEEE
T ss_pred CcCCCCCCceeeEEeccccC-CcCCHHHHHHHHHHHHHHHHHHcC-Cccccc---C-CCcchHHHHHHHHHhcCeeceEE
Confidence 45888888999997654321 223456678999999999999999 764222 1 24578999999999999999999
Q ss_pred EEeecCCCeEEEEEEEeeCCCccCCccccccCCCCCCcCCCCCC---CCCCCCCC----CCCCCCCC---CCCceeeCCC
Q psy17200 81 SRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEGPPE---VFCPRRTV----YPHANDTQ---PPETYFHDDD 150 (177)
Q Consensus 81 ~~c~~~~~~~~~vVC~Y~p~GN~~g~~~~nv~~~~~yy~~G~pc---s~C~~~~~----y~~~~~~~---p~~~~~~~~~ 150 (177)
+.|.. .+++||+|+|.||+.|+.+ |+.|+|| |.|+.+.. -..|..+. +.+..|+.+.
T Consensus 165 ~~c~~----~~~~VC~Y~p~GN~~g~~~---------Y~~G~~c~~~s~C~~g~~~~c~~~lC~~~~~~i~~~~~C~~~~ 231 (424)
T 3nt8_A 165 KVCGT----KLAVSCIYNGVGYITNQPM---------WETGQACQTGADCSTYKNSGCEDGLCTKGPDVPETNQQCPSNT 231 (424)
T ss_dssp EEETT----EEEEEEEESSCCCSTTCBS---------SEESCCBSSGGGCCSSTTCEEETBEEECCCCCCCCCCSCTTCC
T ss_pred EEeCC----cEEEEEEECCCCCcccccc---------cccCCCCCCCCCcccCCCCcccccccCCCCCcCCCCCCCCCCC
Confidence 99942 5899999999999999654 6789999 88986421 12442211 3456788887
Q ss_pred CCceeecceEEEechhhhHhhhhcCC
Q psy17200 151 GNIIDLEGNVYVDTARYYLQRRANGQ 176 (177)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (177)
.|+++.|+.+||.||.||+++|+|+
T Consensus 232 -~~~~~~~~~iL~~HN~~R~~~a~G~ 256 (424)
T 3nt8_A 232 -GMTDSVRDTFLSVHNEFRSSVARGL 256 (424)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999884
No 2
>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}
Probab=99.95 E-value=5.7e-28 Score=186.94 Aligned_cols=111 Identities=32% Similarity=0.582 Sum_probs=86.9
Q ss_pred CCCCC---CCCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEE
Q psy17200 1 MKHST---GTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLG 77 (177)
Q Consensus 1 ~~hs~---~~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VG 77 (177)
+.|++ ...+||||+++... ..+....+.++|+.||+|+++|+ +.....+.....+..++|||||||+++++||
T Consensus 72 ~~h~~~~~~~~~GeNl~~~~~~---~~~~~~~~~~~v~~W~~E~~~y~-~~~~~~~~~~~~~~~~ghfTQ~VW~~t~~vG 147 (196)
T 1u53_A 72 FKHSQPNQRKGLGENIFMSSDS---GMDKAKAAEQASKAWFGELAEKG-VGQNLKLTGGLFSRGVGHYTQMVWQETVKLG 147 (196)
T ss_dssp CCCCCGGGSTTCEEEEEEESCT---TCCHHHHHHHHHHHHHTHHHHHC-CCSCCBCCHHHHTTTCHHHHHHTCTTCCEEE
T ss_pred cCCCccccCCCCCeEEEEECCC---CCCHHHHHHHHHHHHHHHHHHcC-CCcccccCccccCccccchheeeecccCEEe
Confidence 56884 45799999866443 23445678999999999999999 7652111111125679999999999999999
Q ss_pred EEEEEeecCCCeEEEEEEEeeCCCccCCccccccCCCCCCcCCCCCCCCCC
Q psy17200 78 FGISRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEGPPEVFCP 128 (177)
Q Consensus 78 Ca~~~c~~~~~~~~~vVC~Y~p~GN~~g~~~~nv~~~~~yy~~G~pcs~C~ 128 (177)
||++.|.. .+++||+|+|.||+.|+++ |+.|+|||.||
T Consensus 148 Ca~~~c~~----~~~~VC~Y~p~GN~~g~~~---------Y~~G~pcs~C~ 185 (196)
T 1u53_A 148 CYVEACSN----MCYVVCQYGPAGNMMGKDI---------YEKGEPCSKCE 185 (196)
T ss_dssp EEEEECSS----CEEEEEEEESCCCCTTSBS---------SCBSSTTTTCS
T ss_pred eEEEEeCC----CEEEEEEeCCCCCCCCCcC---------CccCCCCCCCC
Confidence 99999942 3799999999999999764 68899999999
No 3
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Probab=99.94 E-value=2.3e-27 Score=185.80 Aligned_cols=114 Identities=33% Similarity=0.623 Sum_probs=88.0
Q ss_pred CCCCCCC-------CcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhcc
Q psy17200 1 MKHSTGT-------KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDS 73 (177)
Q Consensus 1 ~~hs~~~-------~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~t 73 (177)
|.||+.. .+||||++++.. ..+.++|+.||+|+++|+ |..+. ...+..+||||||||+++
T Consensus 49 ~~Hs~~~~r~~~~~~~GENl~~~~~~--------~~~~~av~~W~~E~~~y~-~~~~~----~~~~~~~gHfTQ~VW~~t 115 (210)
T 2ddb_A 49 FAHSPPNTRTVGKLRCGENIFMSSQP--------FPWSGVVQAWYDEIKNFV-YGIGA----KPPGSVIGHYTQVVWYKS 115 (210)
T ss_dssp CSCCCGGGSEETTEECEEEEEEESSC--------CCHHHHHHHHHGGGGGEE-TTTEE----SSTTSCCHHHHHHTCTTC
T ss_pred CCCCCccccccCCCCCcceEEEEcCC--------CCHHHHHHHHHHHhhhCC-CCCCC----CCCCCcccchhhhhhhhc
Confidence 5687521 479999877543 136789999999999999 76532 223577999999999999
Q ss_pred ceEEEEEEEeecCCCeEEEEEEEeeCCCccCCccccccCCCCCCcCCCCCCCCCCCCCCCCCCC
Q psy17200 74 RYLGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEGPPEVFCPRRTVYPHAN 137 (177)
Q Consensus 74 t~VGCa~~~c~~~~~~~~~vVC~Y~p~GN~~g~~~~nv~~~~~yy~~G~pcs~C~~~~~y~~~~ 137 (177)
++||||++.|.. + .+++||+|+|+||+.|++. ++ |+.|+|||.||.+..-.+|.
T Consensus 116 ~~vGCa~~~c~~-~--~~~~VC~Y~P~GN~~g~~~------~p-Y~~G~pcs~C~~~c~~gLC~ 169 (210)
T 2ddb_A 116 HLIGCASAKCSS-S--KYLYVCQYCPAGNIRGSIA------TP-YKSGPPCADCPSACVNRLCT 169 (210)
T ss_dssp CEEEEEEEEEET-T--EEEEEEEEESCSSSTTCTT------CS-SCBSSTTTTCTTSEETTEEC
T ss_pred cEeeEEEEEcCC-C--CEEEEEEeeCCCCCCCCcc------CC-CCcCcCccccCCCCCCCCCC
Confidence 999999999953 3 4799999999999999741 22 68999999999654334454
No 4
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A
Probab=99.94 E-value=2.3e-27 Score=187.12 Aligned_cols=116 Identities=26% Similarity=0.488 Sum_probs=88.7
Q ss_pred CCCCCCC-------CcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhcc
Q psy17200 1 MKHSTGT-------KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDS 73 (177)
Q Consensus 1 ~~hs~~~-------~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~t 73 (177)
|.||+.. .+||||+++... ..+.++|+.||+|+++|+ |..+. ...+..+||||||||+++
T Consensus 58 ~~Hs~~~~r~~~~~~~GENl~~~~~~--------~~~~~av~~W~~E~~~y~-~~~~~----~~~~~~~gHfTQ~VW~~t 124 (221)
T 1xta_A 58 LNHSPDNLRVLEGIQCGESIYMSSNA--------RTWTEIIHLWHDEYKNFV-YGVGA----SPPGSVTGHYTQIVWYQT 124 (221)
T ss_dssp CSCCCGGGCEETTEECEEEEEEESSC--------CCHHHHHHHHHGGGGGEE-TTTEE----SSTTCCCHHHHHHTCTTC
T ss_pred CCCcCccccccCCCCCceEEEeecCC--------CCHHHHHHHHHHHHHhcC-CCCCC----CCCCCchhHHHHHHHHhc
Confidence 4677521 489999877543 136789999999999999 76532 223577999999999999
Q ss_pred ceEEEEEEEeecCCCeEEEEEEEeeCCCccCCccccccCCCCCCcCCCCCCCCCCCCCCCCCCC
Q psy17200 74 RYLGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEGPPEVFCPRRTVYPHAN 137 (177)
Q Consensus 74 t~VGCa~~~c~~~~~~~~~vVC~Y~p~GN~~g~~~~nv~~~~~yy~~G~pcs~C~~~~~y~~~~ 137 (177)
++||||++.|... ...+++||+|+|.||+.|++. ++ |+.|+|||.||.+..-.+|.
T Consensus 125 ~~vGCa~~~c~~~-~~~~~~VC~Y~P~GN~~g~~~------~p-Y~~G~pcs~C~~gc~~gLC~ 180 (221)
T 1xta_A 125 YRAGCAVSYCPSS-AWSYFYVCQYCPSGNFQGKTA------TP-YKLGPPCGDCPSACDNGLCT 180 (221)
T ss_dssp CEEEEEEEECTTS-SSSEEEEEEEESCCCCTTTTT------CS-SCBSSTTTTCTTBEETTEEC
T ss_pred CEeeEEEEEcCCC-CccEEEEEEEeCCcCCCCCcC------CC-cccCCccccCCCCCCCCCCC
Confidence 9999999999533 224799999999999999741 22 68999999999654434454
No 5
>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A
Probab=99.94 E-value=7.2e-27 Score=181.93 Aligned_cols=101 Identities=30% Similarity=0.558 Sum_probs=80.9
Q ss_pred CCCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEEEEeec
Q psy17200 6 GTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGISRYVY 85 (177)
Q Consensus 6 ~~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~~~c~~ 85 (177)
+..+||||+..... ...+.++|+.||+|+++|+ |..+.+ ...+||||||||+++++||||++.|..
T Consensus 78 ~~~~GeNl~~~~~~-------~~~~~~~v~~W~~E~~~y~-~~~~~~------~~~~gHfTQ~VW~~t~~vGCa~~~c~~ 143 (205)
T 3q2u_A 78 FTSLGENIWTGSVP-------IFSVSSAITNWYDEIQDYD-FKTRIC------KKVCGHYTQVVWADSYKVGCAVQFCPK 143 (205)
T ss_dssp CSSCEEEEEEEETT-------TCCHHHHHHHHHGGGGGEE-TTTTEE------SSCCHHHHHHTCTTCCEEEEEEEEESC
T ss_pred CCCCceEEEEccCC-------CCCHHHHHHHHHhHHHhcC-CCCCCc------cchhHHHHHHHhhcccEeeeEEEEcCC
Confidence 35799999876543 2357889999999999999 876533 467999999999999999999999954
Q ss_pred CCC-----eEEEEEEEeeCCCccCCccccccCCCCCCcCCCCCCCCCCCC
Q psy17200 86 NGT-----AVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEGPPEVFCPRR 130 (177)
Q Consensus 86 ~~~-----~~~~vVC~Y~p~GN~~g~~~~nv~~~~~yy~~G~pcs~C~~~ 130 (177)
... ...++||+|+|.||+ ++.+ |+.|+|||.||.+
T Consensus 144 ~~g~~~~~~~~~~VC~Y~P~GN~-~~~p---------Y~~G~pcS~C~~g 183 (205)
T 3q2u_A 144 VSGFDALSNGAHFICNYGPGGNY-PTWP---------YKRGATCSACPNN 183 (205)
T ss_dssp CBTCSSCCSEEEEEEEEESCCCC-SSCS---------SCBSSTTTTCSTT
T ss_pred CcCcccccccEEEEEEEECCCCc-CCCC---------CCcCcccccCCCC
Confidence 211 257899999999998 5322 6899999999974
No 6
>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A*
Probab=99.94 E-value=5.4e-27 Score=175.37 Aligned_cols=95 Identities=40% Similarity=0.724 Sum_probs=78.8
Q ss_pred CCCCC---CCCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEE
Q psy17200 1 MKHST---GTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLG 77 (177)
Q Consensus 1 ~~hs~---~~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VG 77 (177)
|.||+ +..+||||+.+..+ ....++|+.||+|.++|+ |..+.+ ...+||||||||++|++||
T Consensus 52 ~~hs~~~~~~~~GeNl~~~~~~--------~~~~~~v~~W~~E~~~y~-~~~~~~------~~~~gHfTQ~VW~~t~~vG 116 (154)
T 4aiw_A 52 LKHSPESSRGQCGENLAWASYD--------QTGKEVADRWYSEIKNYN-FQQPGF------TSGTGHFTAMVWKNTKKMG 116 (154)
T ss_dssp CCCCHHHHTTSSEEEEEEESSC--------CCHHHHHHHHHGGGGGCC-TTSCSC------CTTTHHHHHHHCTTCCEEE
T ss_pred ccccccCCCCCCCeeeEecCCC--------CCHHHHHHHHHHHhhhcc-cCCCCc------CCCcCCeeeeehhhhceee
Confidence 56875 56789999876544 346789999999999999 877654 4569999999999999999
Q ss_pred EEEEEeecCCCeEEEEEEEeeCCCccCCc--cccccCC
Q psy17200 78 FGISRYVYNGTAVYIVVCNYDPAGNVVGL--YASNVLK 113 (177)
Q Consensus 78 Ca~~~c~~~~~~~~~vVC~Y~p~GN~~g~--~~~nv~~ 113 (177)
||++.|. ++. .++||+|.|+||+.|+ |.+||+|
T Consensus 117 Cg~a~c~-~~~--~~vVC~Y~P~GN~~g~~~y~~NV~p 151 (154)
T 4aiw_A 117 VGKASAS-DGS--SFVVARYFPAGNVVNEGFFEENVLP 151 (154)
T ss_dssp EEEEECT-TSC--EEEEEEEESCCCCCSTTHHHHHSCC
T ss_pred eEEEEcC-CCC--EEEEEEEeCCCccCCccchHHhCCC
Confidence 9999994 333 6899999999999876 8889964
No 7
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C*
Probab=99.94 E-value=1.8e-26 Score=183.10 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=82.4
Q ss_pred CCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEEEEeecC
Q psy17200 7 TKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGISRYVYN 86 (177)
Q Consensus 7 ~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~~~c~~~ 86 (177)
+.+|||++...+. ...+....+.++|+.||+|+++|+ +.....+.....+..+||||||||++|++||||++.|..+
T Consensus 102 ~~~Gen~~~~~~~--~~~~~~~~~~~av~~W~~E~~~y~-~~~~~~~~~~~~~~~~gHfTQmVW~~t~~vGCa~~~c~~~ 178 (233)
T 3u3l_C 102 WLPGQLNFKYSGD--KLPRIKELIDDAVKKGHLQKHNIT-REIIENYRENGPNGDVKELALAISDRVTAVGCGLTTWEDG 178 (233)
T ss_dssp SSCEEEEEEEEES--SCCCHHHHHHHHHHHHHGGGGTCC-HHHHHSCCSCC--CCCHHHHHHTCTTCCEEEEEEEEEEET
T ss_pred CcCeEEEEEecCC--CCCCHHHHHHHHHHHHHHHHhhhC-HHHHhcCCCcccccchhhhHHHhhhcCCeeeeEEEEEEcC
Confidence 3689988755443 113456678999999999999998 5421111222235789999999999999999999999654
Q ss_pred CCeEEEEEEEeeCCCccCCccccccCCCCCCcCCC-CCCCCCCCC
Q psy17200 87 GTAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEG-PPEVFCPRR 130 (177)
Q Consensus 87 ~~~~~~vVC~Y~p~GN~~g~~~~nv~~~~~yy~~G-~pcs~C~~~ 130 (177)
+...++|||+|+| ||+.|+.+ |+.| .|||.| .+
T Consensus 179 ~~~~~~~VC~Y~p-GN~~g~~~---------Y~~G~~pcs~C-~g 212 (233)
T 3u3l_C 179 AKARALLTCNFSS-QNTRGRPV---------YKIGNSPGEKC-IE 212 (233)
T ss_dssp TEEEEEEEEEESC-CCCTTSCS---------SCBCSSTTTTC-SS
T ss_pred CeeEEEEEEECCC-CCCCCCce---------eeCCCCccccC-CC
Confidence 4346899999998 99999643 6789 999999 44
No 8
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}
Probab=99.92 E-value=9.9e-25 Score=186.31 Aligned_cols=114 Identities=30% Similarity=0.541 Sum_probs=89.0
Q ss_pred CCCCC---CCCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCC---CCCCcccchhhhhhhhccc
Q psy17200 1 MKHST---GTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINT---DTSRFCIGHFTQLVWRDSR 74 (177)
Q Consensus 1 ~~hs~---~~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~---~~~~~~~ghfTQmvW~~tt 74 (177)
+.|++ +..+||||++.... ..+....+.++|+.||+|+++|+ +.....+.. ...+..++|||||||++++
T Consensus 293 ~~h~~~~~~~~~GeNl~~~~~~---~~~~~~~~~~~v~~W~~E~~~y~-~~~~~~~~~~~~~~~~~~~gHfTQ~VW~~t~ 368 (424)
T 3nt8_A 293 YQHSHGEDRPGLGENIYKTSVL---KFDKNKAAKQASQLWWNELKEYG-VGPSNVLTTALWNRPNMQIGHYTQMAWDTTY 368 (424)
T ss_dssp SSCCCTTTSTTCEEEEEEESST---TCCHHHHHHHHHHHHHTHHHHTC-CCTTCBCCHHHHTCTTCCCHHHHHHHCTTCC
T ss_pred ccCCCccccCccceeEEecccC---CCchHHHHHHHHHHHHHHHHhcC-CCCCcccccccccCCCCcccchHHHhhhhcc
Confidence 46876 35799999877543 23345688999999999999999 765432221 1125689999999999999
Q ss_pred eEEEEEEEeecCCCeEEEEEEEeeCCCccCCccccccCCCCCCcCCCCCCCCCCCCC
Q psy17200 75 YLGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEGPPEVFCPRRT 131 (177)
Q Consensus 75 ~VGCa~~~c~~~~~~~~~vVC~Y~p~GN~~g~~~~nv~~~~~yy~~G~pcs~C~~~~ 131 (177)
+||||++.|. .+ .++||+|+|+||+.|+++ |+.|+|||.|+.+.
T Consensus 369 ~vGCa~~~c~-~~---~~~VC~Y~p~GN~~g~~~---------Y~~G~pcs~C~~g~ 412 (424)
T 3nt8_A 369 KLGCAVVFCN-DF---TFGVCQYGPGGNYMGHVI---------YTMGQPCSQCSPGA 412 (424)
T ss_dssp EEEEEEEECS-SS---EEEEEEEESCCCCTTSBS---------SCBSSTTTTCCTTC
T ss_pred eeeeEEEEeC-CC---eEEEEEecCCCCcCCCCC---------CCCCcccccCCcCC
Confidence 9999999994 22 599999999999999754 78999999999653
No 9
>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1
Probab=99.90 E-value=2.6e-24 Score=157.41 Aligned_cols=89 Identities=40% Similarity=0.654 Sum_probs=72.4
Q ss_pred CCCCCCCCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEE
Q psy17200 1 MKHSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGI 80 (177)
Q Consensus 1 ~~hs~~~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~ 80 (177)
|.||++ ||||+++. . ...+.++|+.|++|.++|+ |..+.+ ..+..+||||||||+++++||||+
T Consensus 46 ~~hs~~---GENla~~~-~-------~~~~~~~v~~W~~E~~~y~-~~~~~~----~~~~~~gHfTQ~vW~~t~~vGCa~ 109 (135)
T 1cfe_A 46 LIHSGA---GENLAKGG-G-------DFTGRAAVQLWVSERPSYN-YATNQC----VGGKKCRHYTQVVWRNSVRLGCGR 109 (135)
T ss_dssp SCSCSS---SBCCEECS-S-------SCCHHHHHHHHHTTGGGEE-GGGTEE----CSSSCCSSHHHHHCTTCCEEEEEE
T ss_pred cccCCC---CeEEEEec-C-------CCCHHHHHHHHHhHHhhCC-CCCCCc----CCCCcccceeeeEEccCcEEeEEE
Confidence 568875 99998665 2 1357899999999999999 776533 235679999999999999999999
Q ss_pred EEeecCCCeEEEEEEEeeCCCccCCccc
Q psy17200 81 SRYVYNGTAVYIVVCNYDPAGNVVGLYA 108 (177)
Q Consensus 81 ~~c~~~~~~~~~vVC~Y~p~GN~~g~~~ 108 (177)
+.|. ++ .+++||+|+|+||+.|+++
T Consensus 110 ~~c~-~~--~~~~VC~Y~p~GN~~g~~p 134 (135)
T 1cfe_A 110 ARCN-NG--WWFISCNYDPVGNWIGQRP 134 (135)
T ss_dssp EECT-TS--SEEEEEECSSCCSCTTSCC
T ss_pred EEeC-CC--CEEEEEEEeCCCCCCCCCC
Confidence 9994 33 3799999999999999753
No 10
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta}
Probab=99.89 E-value=1.1e-23 Score=165.49 Aligned_cols=105 Identities=26% Similarity=0.507 Sum_probs=76.1
Q ss_pred CCCCC-----CCCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCC--CCcccchhhhhhhhcc
Q psy17200 1 MKHST-----GTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDT--SRFCIGHFTQLVWRDS 73 (177)
Q Consensus 1 ~~hs~-----~~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~--~~~~~ghfTQmvW~~t 73 (177)
|.||+ +..+||||++.+... . ....+.++|+.||+|+++|+ +.....+. .. ....+||||||||++|
T Consensus 98 ~~Hs~c~~~~~~~~GeNl~~~~~~~---~-~~~~~~~av~~W~~E~~~y~-~~~~~~~~-~~~~~~~~~gHfTQ~VW~~t 171 (218)
T 2vzn_A 98 FEHDACRNVERFAVGQNIAATSSSG---K-NKSTPNEMILLWYNEVKDFD-NRWISSFP-SDDNILMKVGHYTQIVWAKT 171 (218)
T ss_dssp SSCCSCCCCSSSCCEEEEEEEEECC-----CCCCHHHHHHHHHGGGGGCC-GGGSSSCC-CCHHHHHHHHHHHHHTCTTC
T ss_pred cCCCCCCCCccCCCceEEEEEeccC---C-ccchHHHHHHHHHHHHHhcC-cccccCCC-CCcccCCCcchHHHHHHHhc
Confidence 46776 223899997765541 1 11245599999999999999 76321111 11 1356899999999999
Q ss_pred ceEEEEEEEeec-CCCeEEEEEEEeeCCCccCCcccccc
Q psy17200 74 RYLGFGISRYVY-NGTAVYIVVCNYDPAGNVVGLYASNV 111 (177)
Q Consensus 74 t~VGCa~~~c~~-~~~~~~~vVC~Y~p~GN~~g~~~~nv 111 (177)
++||||++.|.. ++...++|||+|+|.||+.|++++++
T Consensus 172 ~~vGCa~~~c~~~~~~~~~~vVC~Y~P~GN~~g~~~y~~ 210 (218)
T 2vzn_A 172 TKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAPIYEI 210 (218)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEEESCCCCTTSCSSCB
T ss_pred CEEeEEEEEEeCCCCeEEEEEEEEECCCCCCCCCccccc
Confidence 999999999964 23335799999999999999887554
No 11
>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1
Probab=99.88 E-value=1e-22 Score=159.00 Aligned_cols=100 Identities=27% Similarity=0.454 Sum_probs=74.6
Q ss_pred CCCCC-----CCCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccce
Q psy17200 1 MKHST-----GTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRY 75 (177)
Q Consensus 1 ~~hs~-----~~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~ 75 (177)
+.|+. ...+||||++.+... .....+.++|+.||+|+++|+ +... + .. .....+||||||||++|++
T Consensus 101 ~~h~~~~~~~~~~~GeNl~~~~~~~----~~~~~~~~av~~W~~E~~~y~-~~~~-~-~~-~~~~~~gHfTQ~VW~~t~~ 172 (209)
T 1qnx_A 101 YGHDTCRDVAKYQVGQNVALTGSTA----AKYDDPVKLVKMWEDEVKDYN-PKKK-F-SG-NDFLKTGHYTQMVWANTKE 172 (209)
T ss_dssp CSCCSCCCCSSSCCEEEEEEEEESS----SCCCCHHHHHHHHHGGGGGCC-TTSC-G-GG-SCHHHHHHHHHHTCTTCCE
T ss_pred ccCCCccCCCCCCCccEEEEecccC----CCcccHHHHHHHHHHhhhhcC-CccC-C-CC-CCCCcccchhhhhhhcCcE
Confidence 46775 123899997665431 112356789999999999999 7642 2 11 1235799999999999999
Q ss_pred EEEEEEEeecCCCeEEEEEEEeeCCCccCCccc
Q psy17200 76 LGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYA 108 (177)
Q Consensus 76 VGCa~~~c~~~~~~~~~vVC~Y~p~GN~~g~~~ 108 (177)
||||++.|..++...++|||+|+|.||+.|+.+
T Consensus 173 vGCa~~~c~~~~~~~~~~VC~Y~P~GN~~g~~~ 205 (209)
T 1qnx_A 173 VGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEEL 205 (209)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESCCCCTTSCS
T ss_pred eeeEEEEEeCCCceeEEEEEEeCCCCCCCCCCC
Confidence 999999996544335789999999999999654
No 12
>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A
Probab=99.87 E-value=1.6e-22 Score=157.50 Aligned_cols=122 Identities=15% Similarity=0.037 Sum_probs=67.0
Q ss_pred ccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEEEEeec--CC
Q psy17200 10 GENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGISRYVY--NG 87 (177)
Q Consensus 10 GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~~~c~~--~~ 87 (177)
||||+...+. .......+.++|+.||+| .++|||||||++|++||||++.|.. .+
T Consensus 74 GeNl~~~sg~---~~~~~~~~~~av~~W~~E--------------------~~gHfTQmVW~~Tt~VGCa~~~C~~~~~~ 130 (206)
T 3s6s_A 74 HRGVTRFSGD---YEGSAISALKEILETFSA--------------------DKNSMRQVVYPKATRFGCSGRLRRNKKTG 130 (206)
T ss_dssp TCEEEEEEEE---CSSCHHHHHHHHHHHHTT--------------------CHHHHHHHHCTTCCEEEEEEEECC-----
T ss_pred CcEEEEecCC---CCccchhHHHHHHHHHhh--------------------hhhhHHHHHHHhhceeeEEEEEecCcCCC
Confidence 9999654432 112223356999999988 3689999999999999999999942 12
Q ss_pred CeEEEEEEEeeCCCccCCccccccCCCCCCcCCCCCCCCCCCCCCC--CCCCCCC---CCCceeeCCCCCceeecceEEE
Q psy17200 88 TAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDEGPPEVFCPRRTVY--PHANDTQ---PPETYFHDDDGNIIDLEGNVYV 162 (177)
Q Consensus 88 ~~~~~vVC~Y~p~GN~~g~~~~nv~~~~~yy~~G~pcs~C~~~~~y--~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~ 162 (177)
...++|||+|+|+| .|+.+ |+.|+|||.|++++++ ..|.+.. |-....-.+.--|.+++-+..+
T Consensus 131 ~~~~~vVCnY~p~G--~g~~~---------Y~~G~pCS~~s~C~t~~~~~C~~gLC~~~~~~~~~~~~~~~~~~~~~~~~ 199 (206)
T 3s6s_A 131 MRRMDWVCVYDKKP--KDGES---------FEGGKPCNENKDCTYYKGSTCEWNLCYTFFAAASFLEQKLISEEDLNSAV 199 (206)
T ss_dssp --EEEEEEEESCCC--CTTCC---------CCCSCCCSSGGGCCSSTTCEECSSCEECSCCC------------------
T ss_pred CceEEEEEEeCCCC--CCCCC---------cccCCCCCCCCCCCCCCCCcCCCCCCCCccchhhHHHHHhccHhhhhhhh
Confidence 22589999999977 67532 6899999875444332 2233211 2222211122235556666666
Q ss_pred ech
Q psy17200 163 DTA 165 (177)
Q Consensus 163 ~~~ 165 (177)
|-|
T Consensus 200 ~~~ 202 (206)
T 3s6s_A 200 DHH 202 (206)
T ss_dssp ---
T ss_pred hcc
Confidence 655
No 13
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C*
Probab=95.61 E-value=0.0019 Score=50.30 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCCCCCceee-CCCCCceeecceEEEechhhhHhhhhcCC
Q psy17200 127 CPRRTVYPHANDTQPPETYFH-DDDGNIIDLEGNVYVDTARYYLQRRANGQ 176 (177)
Q Consensus 127 C~~~~~y~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (177)
|+.+..=-+|+.+.....+-+ ...-.|+++.|+.+||.||.||++||+|+
T Consensus 9 C~~~~~hi~C~~~~~~~~C~~~~~~~~~s~~~~~~il~~HN~~R~~va~G~ 59 (233)
T 3u3l_C 9 CRGDNYHVGCGEPAYAQECGQSPRTRELLKEHRNEILSKINDVRDHVAKGS 59 (233)
T ss_dssp CTTCCCBTTSSCCCCCGGGTTCCEECCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCccccCCCCCCcccCCCCceecCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 665555556754421111100 00125778899999999999999999995
No 14
>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1
Probab=95.13 E-value=0.0012 Score=50.61 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCCCCCCCceeeC---CCCCceeecceEEEechhhhHhhhhcC
Q psy17200 127 CPRRTVYPHANDTQPPETYFHD---DDGNIIDLEGNVYVDTARYYLQRRANG 175 (177)
Q Consensus 127 C~~~~~y~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (177)
|+.+..=-+|+.+ .-...|+. ....|+++.++.+||.||.||++||.|
T Consensus 13 C~~~~~H~~C~~~-~~~~~C~~~~~~~~~l~~~~~~~iL~~HN~~R~~~a~G 63 (209)
T 1qnx_A 13 CLKGGVHTACKYG-SLKPNCGNKVVVSYGLTKQEKQDILKEHNDFRQKIARG 63 (209)
T ss_dssp CTTCCCCHHHHCC-CCSCCCSSCEEEEESCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcccCCCC-CCCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 6654444445433 11223443 122678889999999999999999988
No 15
>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}
Probab=95.06 E-value=0.029 Score=46.30 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=34.4
Q ss_pred CcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEEE
Q psy17200 8 KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGIS 81 (177)
Q Consensus 8 ~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~~ 81 (177)
.+||||+.+..+ ...+++.|++ ..||..+|+|...++||+|+.
T Consensus 286 ~~GENIA~G~~s----------~~~av~~Wmn---------------------SpGHr~NIL~~~~t~iGvGv~ 328 (339)
T 4ifa_A 286 LAGENIAAQHSD----------GVAALQGWLN---------------------SEGHRKNLLNEQFTGLGVGVY 328 (339)
T ss_dssp EEEEEEEESCSS----------HHHHHHHHHT---------------------SHHHHHHHTCTTCCEEEEEEE
T ss_pred ceeEEEEEeCCC----------HHHHHHHHhC---------------------CHhHHHHHhCCCCCEEEEEEE
Confidence 479999865432 5688999963 138999999999999999986
No 16
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta}
Probab=93.85 E-value=0.005 Score=47.41 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCceeecceEEEechhhhHhhhhcCC
Q psy17200 151 GNIIDLEGNVYVDTARYYLQRRANGQ 176 (177)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (177)
..|+++.++.+||.||.||++||.|+
T Consensus 36 ~~~t~~~~~~iL~~HN~~R~~~a~G~ 61 (218)
T 2vzn_A 36 VGFTDAEKDAIVNKHNELRQRVASGK 61 (218)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 37888999999999999999999884
No 17
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=73.33 E-value=3 Score=33.86 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=33.7
Q ss_pred CCcccEEEEEeCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCcccchhhhhhhhccceEEEEEE
Q psy17200 7 TKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGIS 81 (177)
Q Consensus 7 ~~~GqNi~~~~~~~~~~~~~~~~~~~av~~W~~E~~~~~~~~~~~~~~~~~~~~~~ghfTQmvW~~tt~VGCa~~ 81 (177)
..+||||+..+.+ ...++..|++ . -||-..|+...-++||.|+.
T Consensus 269 ~~~gENIA~g~~~----------~~~vv~~Wmn-------------------S--pgHR~NiL~~~~t~iGvGv~ 312 (323)
T 4h0a_A 269 KTTAQNVGYAFND----------VPTLIHSWMN-------------------S--DIHRSRLLNSKYDEMGGDVM 312 (323)
T ss_dssp SEEEEEEEESCCS----------HHHHHHHHHT-------------------S--HHHHHHHTCSSCCEEEEEEE
T ss_pred CeeeeEEecCCCC----------HHHHHHHHHc-------------------C--HHHHHHHcCCCCCEEEEEEE
Confidence 3469999765433 5678899962 1 27999999999999999975
No 18
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=50.18 E-value=1.2 Score=27.94 Aligned_cols=24 Identities=17% Similarity=-0.078 Sum_probs=19.5
Q ss_pred CceeecceEEEechhhhHhhhhcC
Q psy17200 152 NIIDLEGNVYVDTARYYLQRRANG 175 (177)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~ 175 (177)
+||+++|+.+-=...-+|.++|+|
T Consensus 21 SMT~~Er~nP~ii~~SR~~RIA~G 44 (69)
T 1dul_A 21 SMTMKERAKPEIIKGSRKRRIAAG 44 (69)
T ss_dssp TSCHHHHHCGGGCCHHHHHHHHHH
T ss_pred cCCHHHHhCccccCHHHHHHHHcc
Confidence 688998887766666789999988
No 19
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=37.84 E-value=2.7 Score=28.57 Aligned_cols=24 Identities=17% Similarity=-0.078 Sum_probs=19.2
Q ss_pred CceeecceEEEechhhhHhhhhcC
Q psy17200 152 NIIDLEGNVYVDTARYYLQRRANG 175 (177)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~ 175 (177)
+||+++|+.+--...-+|.++|+|
T Consensus 55 SMT~~Er~~P~ii~~SR~~RIA~G 78 (105)
T 1hq1_A 55 SMTMKERAKPEIIKGSRKRRIAAG 78 (105)
T ss_dssp TSCHHHHHCGGGCCHHHHHHHHHH
T ss_pred cCCHHHhhChhhcCHHHHHHHHcc
Confidence 688888887766666788899987
No 20
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=25.30 E-value=5.6 Score=27.56 Aligned_cols=24 Identities=17% Similarity=-0.052 Sum_probs=18.0
Q ss_pred CceeecceEEEechhhhHhhhhcC
Q psy17200 152 NIIDLEGNVYVDTARYYLQRRANG 175 (177)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~ 175 (177)
+||+++|+.+-=...-+|.|+|+|
T Consensus 64 SMT~~Er~~P~ii~~SR~~RIA~G 87 (119)
T 2jqe_A 64 SMTEEELLNPKIIDSSRIRRIAIG 87 (119)
T ss_dssp HSCHHHHHCGGGCCHHHHHHHHHH
T ss_pred hCCHHHHhChhhcCHHHHHHHHcc
Confidence 578888887655556688888887
No 21
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=24.62 E-value=4.6 Score=27.56 Aligned_cols=24 Identities=25% Similarity=0.099 Sum_probs=17.1
Q ss_pred CceeecceE---EEech--hhhHhhhhcC
Q psy17200 152 NIIDLEGNV---YVDTA--RYYLQRRANG 175 (177)
Q Consensus 152 ~~~~~~~~~---~~~~~--~~~~~~~~~~ 175 (177)
+||+++|+. +-=.. .-+|.|+|+|
T Consensus 56 SMT~~Er~~~~~P~ii~~~~SR~~RIA~G 84 (109)
T 1qb2_A 56 SMNDQELDSTDGAKVFSKQPGRIQRVARG 84 (109)
T ss_dssp TSCHHHHHSTTTHHHHHHSTHHHHHHHHH
T ss_pred cCCHHHHhcCCCccccccchHHHHHHHcc
Confidence 788888887 43333 4588889887
No 22
>3npd_A Putative secreted protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CXS; 1.60A {Pseudomonas aeruginosa}
Probab=23.73 E-value=26 Score=23.65 Aligned_cols=11 Identities=36% Similarity=0.265 Sum_probs=8.3
Q ss_pred hhhhHhhhhcC
Q psy17200 165 ARYYLQRRANG 175 (177)
Q Consensus 165 ~~~~~~~~~~~ 175 (177)
.++||+++|+|
T Consensus 76 N~gyR~LmakG 86 (118)
T 3npd_A 76 NTGYRQLLARG 86 (118)
T ss_dssp CHHHHHHHTTT
T ss_pred CccHHHHHhCC
Confidence 46788888877
No 23
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=21.44 E-value=6.5 Score=27.64 Aligned_cols=24 Identities=25% Similarity=0.081 Sum_probs=16.7
Q ss_pred CceeecceE---EEec--hhhhHhhhhcC
Q psy17200 152 NIIDLEGNV---YVDT--ARYYLQRRANG 175 (177)
Q Consensus 152 ~~~~~~~~~---~~~~--~~~~~~~~~~~ 175 (177)
+||+++|+. +-=. ..-+|.|+|+|
T Consensus 69 SMT~~Er~n~~~P~ii~~~~SRk~RIA~G 97 (129)
T 1mfq_C 69 SMNDQELDSTDGAKVFSKQPGRIQRVARG 97 (129)
T ss_dssp TSCHHHHTCTTHHHHHHHCTHHHHHHHHH
T ss_pred ccCHHHHhcCCCcccccCChHHHHHHHcc
Confidence 788888887 4333 34588888887
Done!