RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17200
(177 letters)
>gnl|CDD|240182 cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-like extracellular
protein domain, golgi-associated plant pathogenesis
related protein (GAPR)-like sub-family. The wider family
of SCP containing proteins includes plant
pathogenesis-related protein 1 (PR-1), CRISPs, mammalian
cysteine-rich secretory proteins, which combine SCP with
a C-terminal cysteine rich domain, and allergen 5 from
vespid venom. It has been proposed that SCP domains may
function as endopeptidases. The human GAPR-1 protein has
been reported to dimerize, and such a dimer may form an
active site containing a catalytic triad. GAPR-1 and
GLIPR-2 appear to be synonyms.
Length = 132
Score = 95.7 bits (239), Expect = 7e-26
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 15/103 (14%)
Query: 1 MKHSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRF 60
++HS+ + GENL + + E+AVDSWY+EI Y D+ P ++ T
Sbjct: 45 LQHSSPSGYGENLAYASGSGPDLT-----GEEAVDSWYNEIKKY-DFNKPGF-SSKT--- 94
Query: 61 CIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNV 103
GHFTQ+VW+ S LG G+++ VY VV Y PAGNV
Sbjct: 95 --GHFTQVVWKSSTELGVGVAK--SKKGCVY-VVARYRPAGNV 132
>gnl|CDD|214553 smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of
extracellular domains. Human glioma
pathogenesis-related protein GliPR and the plant
pathogenesis-related protein represent functional links
between plant defense systems and human immune system.
This family has no known function.
Length = 144
Score = 81.7 bits (202), Expect = 3e-20
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 1 MKHSTG-TKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSR 59
HST GENL +S P AV WY E Y + +
Sbjct: 52 FGHSTPRPGYGENLAWWSSS---TALPDTYASAAVQLWYDEFQDYG----YSSNTCKDTN 104
Query: 60 FCIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDP 99
IGH+TQ+VW + +G G++ +VVCNYDP
Sbjct: 105 GKIGHYTQVVWAKTYKVGCGVANCPDGTKKKTVVVCNYDP 144
>gnl|CDD|240184 cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like extracellular
protein domain, PRY1-like sub-family restricted to
fungi. The wider family of SCP containing proteins
includes plant pathogenesis-related protein 1 (PR-1),
CRISPs, mammalian cysteine-rich secretory proteins, and
allergen 5 from vespid venom. It has been proposed that
SCP domains may function as endopeptidases. PRY1 is a
yeast protein that is up-regulated in core ESCRT
mutants. This PRY1-like group also contains fruiting
body proteins SC7/14 from Schizophyllum commune.
Length = 129
Score = 75.8 bits (187), Expect = 3e-18
Identities = 42/105 (40%), Positives = 49/105 (46%), Gaps = 22/105 (20%)
Query: 2 KHSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFC 61
HS G GENL AVD+WY EI Y DY NP + T
Sbjct: 46 AHSGG-PYGENLAAGYPS----------GTSAVDAWYDEIEDY-DYSNPGF-SEAT---- 88
Query: 62 IGHFTQLVWRDSRYLGFGISRYVYNGTAVYI-VVCNYDPAGNVVG 105
GHFTQLVW+ + +G Y G A +VC YDPAGNV+G
Sbjct: 89 -GHFTQLVWKSTTQVGCA---YKDCGGAWGWYIVCEYDPAGNVIG 129
>gnl|CDD|240180 cd05380, SCP_euk, SCP_euk: SCP-like extracellular protein domain,
as found mainly in eukaryotes. This family includes
plant pathogenesis-related protein 1 (PR-1), CRISPs,
mammalian cysteine-rich secretory proteins, and allergen
5 from vespid venom. It has been proposed that SCP
domains may function as endopeptidases.
Length = 144
Score = 74.5 bits (183), Expect = 1e-17
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 1 MKHSTGTK---LGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDT 57
+HS +G+NL +S ++ EDAV++WY+E+ Y + T+
Sbjct: 51 FEHSPCRNTGGVGQNLAAGSSTG---STVEELAEDAVNAWYNELKDYG----FGSNPTNN 103
Query: 58 SRFCIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYD 98
IGHFTQ+VW + +G ++R +G +VVCNY
Sbjct: 104 FNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144
>gnl|CDD|240181 cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like extracellular
protein domain, PR-1 like subfamily. The wider family of
SCP containing proteins includes plant
pathogenesis-related protein 1 (PR-1), which accumulates
after infections with pathogens, and may act as an
anti-fungal agent or be involved in cell wall loosening.
It also includes CRISPs, mammalian cysteine-rich
secretory proteins, and allergen 5 from vespid venom. It
has been proposed that SCP domains may function as
endopeptidases.
Length = 136
Score = 65.0 bits (159), Expect = 6e-14
Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 1 MKHSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRF 60
+ HS G GENLF + DAV SW SE Y DY + NT +
Sbjct: 43 LVHSNG-PYGENLFWGSGG-------NWSAADAVASWVSEKKYY-DYDS----NTCAAGK 89
Query: 61 CIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVG 105
GH+TQ+VWR++ +G NG V+I +CNYDP GN +G
Sbjct: 90 MCGHYTQVVWRNTTRVGCARVT-CDNGGGVFI-ICNYDPPGNYIG 132
>gnl|CDD|238097 cd00168, SCP, SCP: SCP-like extracellular protein domain, found in
eukaryotes and prokaryotes. This family includes plant
pathogenesis-related protein 1 (PR-1), which accumulates
after infections with pathogens, and may act as an
anti-fungal agent or be involved in cell wall loosening.
This family also includes CRISPs, mammalian
cysteine-rich secretory proteins, which combine SCP with
a C-terminal cysteine rich domain, and allergen 5 from
vespid venom. Roles for CRISP, in response to pathogens,
fertilization, and sperm maturation have been proposed.
One member, Tex31 from the venom duct of Conus textile,
has been shown to possess proteolytic activity sensitive
to serine protease inhibitors. The human GAPR-1 protein
has been reported to dimerize, and such a dimer may form
an active site containing a catalytic triad. SCP has
also been proposed to be a Ca++ chelating serine
protease. The Ca++-chelating function would fit with
various signaling processes that members of this family,
such as the CRISPs, are involved in, and is supported by
sequence and structural evidence of a conserved pocket
containing two histidines and a glutamate. It also may
explain how helothermine, a toxic peptide secreted by
the beaded lizard, blocks Ca++ transporting ryanodine
receptors. Little is known about the biological roles of
the bacterial and archaeal SCP domains.
Length = 122
Score = 62.9 bits (153), Expect = 3e-13
Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 21/100 (21%)
Query: 2 KHSTG---TKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTS 58
KHS +GENL S D AV +WY+EI YN +G P S
Sbjct: 41 KHSGEDGRGFVGENLA-AGSYD-------MTGPAAVQAWYNEIKNYN-FGQPGF-----S 86
Query: 59 RFCIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYD 98
GH+TQ+VW+++ +G G + G+ Y VVCNY
Sbjct: 87 SGT-GHYTQVVWKNTTKIGCG---VAFCGSNSYYVVCNYG 122
>gnl|CDD|240185 cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-like extracellular
protein domain, glioma pathogenesis-related protein
(GLIPR)-like sub-family. The wider family of SCP
containing proteins includes plant pathogenesis-related
protein 1 (PR-1), CRISPs, mammalian cysteine-rich
secretory proteins, and allergen 5 from vespid venom. It
has been proposed that SCP domains may function as
endopeptidases.
Length = 144
Score = 54.3 bits (131), Expect = 6e-10
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 3 HSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDT-SRFC 61
H T +GEN++ L + ++AV SWY+E Y+ +T++ SR C
Sbjct: 59 HPKFTSVGENIW-------LGSIYIFSPKNAVTSWYNEGKFYD-------FDTNSCSRVC 104
Query: 62 IGHFTQLVWRDSRYLGFGIS--RYVYNGTAVYIVVCNYDPA 100
GH+TQ+VW S +G ++ + I VCNY PA
Sbjct: 105 -GHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144
>gnl|CDD|240183 cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellular protein
domain, CRISP-like sub-family. The wider family of SCP
containing proteins includes plant pathogenesis-related
protein 1 (PR-1), CRISPs, mammalian cysteine-rich
secretory proteins, which combine SCP with a C-terminal
cysteine rich domain, and allergen 5 from vespid venom.
Involvement of CRISP in response to pathogens,
fertilization, and sperm maturation have been proposed.
One member, Tex31 from the venom duct of Conus textile,
has been shown to possess proteolytic activity sensitive
to serine protease inhibitors. SCP has also been
proposed to be a Ca++ chelating serine protease. The
Ca++-chelating function would fit with various signaling
processes that members of this family, such as the
CRISPs, are involved in, and is supported by sequence
and structural evidence of a conserved pocket containing
two histidines and a glutamate. It also may explain how
helothermine, a toxic peptide secreted by the beaded
lizard, blocks Ca++ transporting ryanodine receptors.
One member, DE or CRISP-1, has been shown to mediate
gamete fusion by binding to the egg surface; a sequence
motif in the SCP domain plays a role in that binding.
Length = 138
Score = 50.0 bits (120), Expect = 3e-08
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 21/107 (19%)
Query: 1 MKHS-------TGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTI 53
+ HS G GEN+F ++ P D + +WY E + YG +
Sbjct: 46 LTHSPPNGRTIGGITCGENIFMSSY-------PRSW-SDVIQAWYDEYKDFK-YG----V 92
Query: 54 NTDTSRFCIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPA 100
+GH+TQ+VW S +G ++ Y N Y VC+Y PA
Sbjct: 93 GATPPGAVVGHYTQIVWYKSYLVGCAVA-YCPNSKYKYFYVCHYCPA 138
>gnl|CDD|215778 pfam00188, CAP, Cysteine-rich secretory protein family. This is a
large family of cysteine-rich secretory proteins,
antigen 5, and pathogenesis-related 1 proteins (CAP)
that are found in a wide range of organisms, including
prokaryotes and non-vertebrate eukaryotes, The nine
subfamilies of the mammalian CAP 'super'family include:
the human glioma pathogenesis-related 1 (GLIPR1), Golgi
associated pathogenesis related-1 (GAPR1) proteins,
peptidase inhibitor 15 (PI15), peptidase inhibitor 16
(PI16), cysteine-rich secretory proteins (CRISPs), CRISP
LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain
containing 2 (CRISPLD2), mannose receptor like and the
R3H domain containing like proteins. Members are most
often secreted and have an extracellular endocrine or
paracrine function and are involved in processes
including the regulation of extracellular matrix and
branching morphogenesis, potentially as either proteases
or protease inhibitors; in ion channel regulation in
fertility; as tumour suppressor or pro-oncogenic genes
in tissues including the prostate; and in cell-cell
adhesion during fertilisation. The overall protein
structural conservation within the CAP 'super'family
results in fundamentally similar functions for the CAP
domain in all members, yet the diversity outside of this
core region dramatically alters the target specificity
and, thus, the biological consequences. The
Ca++-chelating function would fit with the various
signalling processes (e.g. the CRISP proteins) that
members of this family are involved in, and also the
sequence and structural evidence of a conserved pocket
containing two histidines and a glutamate. It also may
explain how helothermine from Heloderma horridum
horridum blocks the Ca++ transporting ryanodine
receptors.
Length = 121
Score = 47.2 bits (112), Expect = 2e-07
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 3 HSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCI 62
G GENL + V AV++WY E Y+ + +
Sbjct: 38 GYFGHDYGENLALVSVAGKADDPGVA----AVENWYDEAKDYDAAVGINAWMSS-----P 88
Query: 63 GHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNY 97
GH T L+W S +G + + Y VVCNY
Sbjct: 89 GHRTNLLWPKSTKVGCAV--AKCGDGSSYYVVCNY 121
>gnl|CDD|240186 cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracellular protein
domain in HrTT-1, a tail-tip epidermis marker in
ascidians. The wider family of SCP containing proteins
includes plant pathogenesis-related protein 1 (PR-1),
CRISPs, mammalian cysteine-rich secretory proteins, and
allergen 5 from vespid venom. It has been proposed that
SCP domains may function as endopeptidases.
Length = 136
Score = 47.1 bits (112), Expect = 3e-07
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 10 GENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLV 69
GENLF + P AV+ W +E N +T ++ C GH+TQ+V
Sbjct: 56 GENLF-------ISTGPPFDATKAVEDWNNE----KLDYNYNTNTCAPNKMC-GHYTQVV 103
Query: 70 WRDSRYLGFGISR----YVYNGTAVYIVVCNY 97
W ++ +G G V ++VCNY
Sbjct: 104 WANTFKIGCGSYFCETLEVLRWENATLLVCNY 135
>gnl|CDD|222837 PHA01794, PHA01794, hypothetical protein.
Length = 134
Score = 29.9 bits (67), Expect = 0.31
Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 12 NLFKTASDDHLIKDPV-KVVEDAVDSWYSEISTYND-YGNPDTINTDTSRF--CIGHFTQ 67
+L + ++ L +D + + D V+++ E T + + D+ F I + +
Sbjct: 40 DLVRLSAKKALTEDEILDAIADFVETFEDEEGTTEGLFAELEKEMVDSGFFRAKIKKYIE 99
Query: 68 LVWRDSRYL 76
+ + +RYL
Sbjct: 100 NMEKSARYL 108
>gnl|CDD|151704 pfam11263, Attachment_P66, Borrelia burgdorferi attachment protein
P66. P66 is an outer membrane protein in Borrelia
burgdorferi, the agent of Lyme disease. P66 has a role
in the attachment of Borrelia burgdorferi to human
cell-surface receptors.
Length = 233
Score = 30.2 bits (68), Expect = 0.39
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 6 GTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYND 46
G G+NL+K S + LI++ + + + +EISTY D
Sbjct: 85 GITYGQNLYKPTSSNKLIQE---IAAKSFQTLNAEISTYED 122
>gnl|CDD|218422 pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This
family consists of several bacterial proteins which are
closely related to NAD-glutamate dehydrogenase found in
Streptomyces clavuligerus. Glutamate dehydrogenases
(GDHs) are a broadly distributed group of enzymes that
catalyze the reversible oxidative deamination of
glutamate to ketoglutarate and ammonia.
Length = 1526
Score = 28.6 bits (65), Expect = 1.8
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 91 YIVVCNYDPAGNVV------GLYASNVL 112
YI V +D G V+ GL+ S
Sbjct: 233 YIGVKRFDADGEVIGEHRFLGLFTSAAY 260
>gnl|CDD|236069 PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 699
Score = 27.9 bits (62), Expect = 3.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 39 SEISTYNDYGNPDTINTDTS 58
E S NDYG D I D S
Sbjct: 388 QETSIINDYGIEDEIKRDIS 407
>gnl|CDD|216925 pfam02194, PXA, PXA domain. This domain is associated with PX
domains pfam00787.
Length = 182
Score = 27.2 bits (61), Expect = 4.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 28 KVVEDAVDSWYSEIS 42
++ D V SWYS IS
Sbjct: 14 LIIRDFVQSWYSRIS 28
>gnl|CDD|219646 pfam07924, NuiA, Nuclease A inhibitor-like protein. This family
consists of protein sequences that are similar to the
nuclease A inhibitor expressed by bacteria of the genus
Anabaena (NuiA). This sequence is organised to form an
alpha-beta-alpha sandwich fold, which is similar to the
PR-1-like fold. NuiA interacts with nuclease A by means
of residues located at one end of the molecule,
including residues making up the loop between helices
III and IV and the loop between strands C and D. The
mechanism of inhibition of nuclease A by NuiA is as yet
incompletely understood.
Length = 133
Score = 26.3 bits (58), Expect = 6.3
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 20 DHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFG 79
H PVKVV +D++++ +T D+ + + T + F LV L
Sbjct: 49 GHPPDAPVKVVS--LDAFFAPATTPQDWHEEEELAT------VVQFQGLVETLKANLR-D 99
Query: 80 ISRYVYNGTAVYIVVCNYDPAGNVVGL 106
Y + + PAGN+ GL
Sbjct: 100 PQVYRVGEVEADVYIIGETPAGNLAGL 126
>gnl|CDD|193506 cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a
periplasmic enzyme. Peptidase M20 family, Glutamate
carboxypeptidase (carboxypeptidase G; carboxypeptidase
G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase
G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase;
E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme
that is synthesized with a signal peptide. It is a
dimeric zinc-dependent exopeptidase, with two domains, a
catalytic domain, which provides the ligands for the two
zinc ions in the active site, and a dimerization domain.
CPDG2 cleaves the C-terminal glutamate moiety from a
wide range of N-acyl groups, including peptidyl,
aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and
pteroyl groups to release benzoic acid, phenol, and
aniline mustards. It is used clinically to treat
methotrexate toxicity by hydrolyzing it to inactive and
non-toxic metabolites. It is also proposed for use in
antibody-directed enzyme prodrug therapy; for example,
glutamate can be cleaved from glutamated benzoyl
nitrogen mustards, producing nitrogen mustards with
effective cytotoxicity against tumor cells.
Length = 363
Score = 26.7 bits (60), Expect = 7.6
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 100 AGNVVGLYASNVLKEGDWDDEGPPEVF 126
G VV LYA LK D+ P V
Sbjct: 101 GGIVVALYALKALKALGLLDDLPITVL 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.138 0.435
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,342,689
Number of extensions: 857365
Number of successful extensions: 696
Number of sequences better than 10.0: 1
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 26
Length of query: 177
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 86
Effective length of database: 6,901,388
Effective search space: 593519368
Effective search space used: 593519368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.4 bits)