RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17200
(177 letters)
>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding
protein, golgi apparatus, myristate; HET: I6P; 1.50A
{Homo sapiens} PDB: 1smb_A*
Length = 154
Score = 97.4 bits (243), Expect = 2e-26
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 23/118 (19%)
Query: 1 MKHSTGTKL---GENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDT 57
+KHS + GENL + D + ++ D WYSEI Y ++ P +
Sbjct: 52 LKHSPESSRGQCGENLAWASYD--------QTGKEVADRWYSEIKNY-NFQQPGFTSG-- 100
Query: 58 SRFCIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVG--LYASNVLK 113
GHFT +VW++++ +G G + VV Y PAGNVV + NVL
Sbjct: 101 ----TGHFTAMVWKNTKKMGVGKASASDGS---SFVVARYFPAGNVVNEGFFEENVLP 151
>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula
vulgaris} SCOP: d.111.1.1
Length = 209
Score = 93.7 bits (233), Expect = 2e-24
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 3 HSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCI 62
++G+N+ T S V W E+ YN P +
Sbjct: 108 DVAKYQVGQNVALTGSTA----AKYDDPVKLVKMWEDEVKDYN----PKKKFSGNDFLKT 159
Query: 63 GHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVG 105
GH+TQ+VW +++ +G G +Y+ + +VCNY P+GN
Sbjct: 160 GHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKN 202
>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}
Length = 196
Score = 93.0 bits (231), Expect = 2e-24
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 1 MKHSTGT---KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDT 57
KHS LGEN+F ++ D K E A +W+ E++ G +
Sbjct: 72 FKHSQPNQRKGLGENIFMSSDSG---MDKAKAAEQASKAWFGELAEKG-VGQNLKLTGGL 127
Query: 58 SRFCIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVG 105
+GH+TQ+VW+++ LG + N VVC Y PAGN++G
Sbjct: 128 FSRGVGHYTQMVWQETVKLGCYVEAC-SNM---CYVVCQYGPAGNMMG 171
>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense;
NMR {Solanum lycopersicum} SCOP: d.111.1.1
Length = 135
Score = 90.8 bits (226), Expect = 3e-24
Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 19/105 (18%)
Query: 1 MKHSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRF 60
+ HS GENL K D AV W SE +YN Y N
Sbjct: 46 LIHS---GAGENLAKGGGD--------FTGRAAVQLWVSERPSYN-YAT----NQCVGGK 89
Query: 61 CIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVG 105
H+TQ+VWR+S LG G +R + + CNYDP GN +G
Sbjct: 90 KCRHYTQVVWRNSVRLGCGRARCNNGW---WFISCNYDPVGNWIG 131
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted,
cross- reactivity; 3.05A {Solenopsis invicta}
Length = 218
Score = 87.7 bits (217), Expect = 4e-22
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 1 MKHST-----GTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINT 55
+H +G+N+ T+S + + WY+E+ +++ +
Sbjct: 98 FEHDACRNVERFAVGQNIAATSSSG----KNKSTPNEMILLWYNEVKDFDNRWISSFPSD 153
Query: 56 DTSRFCIGHFTQLVWRDSRYLGFGISRYV-YNGTAVYIVVCNYDPAGNVVG 105
D +GH+TQ+VW + +G G + + + +VCNY PAGNV+G
Sbjct: 154 DNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLG 204
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein,
cysteine-rich secretory PROT domain, immune system;
2.20A {Necator americanus}
Length = 424
Score = 89.0 bits (220), Expect = 2e-21
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 14/111 (12%)
Query: 1 MKHSTGT---KLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDT 57
+HS G LGEN++KT+ D K + A W++E+ Y G + + T
Sbjct: 293 YQHSHGEDRPGLGENIYKTSVLK---FDKNKAAKQASQLWWNELKEYG-VGPSNVLTTAL 348
Query: 58 SRFC---IGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVG 105
IGH+TQ+ W + LG + VC Y P GN +G
Sbjct: 349 WNRPNMQIGHYTQMAWDTTYKLGCAVVFC----NDFTFGVCQYGPGGNYMG 395
Score = 86.3 bits (213), Expect = 2e-20
Identities = 19/177 (10%), Positives = 43/177 (24%), Gaps = 10/177 (5%)
Query: 1 MKHSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRF 60
+ + +N +S DP +E + W+S +
Sbjct: 91 SGFAGIQGVAQNTMSWSSSGG-YPDPSVKIEPTLSGWWSGAKKNGVGPDNKYTGGG---- 145
Query: 61 CIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDE 120
+ F+ +V+ ++ LG V C Y+ G + + +
Sbjct: 146 -LFAFSNMVYSETTKLGCAYKVC----GTKLAVSCIYNGVGYITNQPMWETGQACQTGAD 200
Query: 121 GPPEVFCPRRTVYPHANDTQPPETYFHDDDGNIIDLEGNVYVDTARYYLQRRANGQA 177
P + + D + ++ + A G
Sbjct: 201 CSTYKNSGCEDGLCTKGPDVPETNQQCPSNTGMTDSVRDTFLSVHNEFRSSVARGLE 257
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 85.7 bits (212), Expect = 2e-21
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 15/116 (12%)
Query: 2 KHSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFC 61
+ G + GE+++ +++ + + W+ E + +
Sbjct: 66 RVLEGIQCGESIYMSSNART--------WTEIIHLWHDEYKNFVYGVGASPPGSV----- 112
Query: 62 IGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGDW 117
GH+TQ+VW + G +S + Y VC Y P+GN G A+ K G
Sbjct: 113 TGHYTQIVWYQTYRAGCAVSYC-PSSAWSYFYVCQYCPSGNFQGKTATPY-KLGPP 166
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 83.4 bits (206), Expect = 1e-20
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 1 MKHSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRF 60
+ + GEN+F ++ V +WY EI + YG
Sbjct: 56 TRTVGKLRCGENIFMSSQPF--------PWSGVVQAWYDEIKNFV-YGI----GAKPPGS 102
Query: 61 CIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGDWDDE 120
IGH+TQ+VW S +G ++ + Y+ VC Y PAGN+ G A+
Sbjct: 103 VIGHYTQVVWYKSHLIGCASAKCSSSK---YLYVCQYCPAGNIRGSIATPY-------KS 152
Query: 121 GPPEVFCP 128
GPP CP
Sbjct: 153 GPPCADCP 160
>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein;
1.85A {Homo sapiens} PDB: 3q2r_A
Length = 205
Score = 81.5 bits (201), Expect = 8e-20
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 19/108 (17%)
Query: 3 HSTGTKLGENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCI 62
H T LGEN++ + P+ V A+ +WY EI Y+ T +
Sbjct: 75 HPNFTSLGENIWTGSV-------PIFSVSSAITNWYDEIQDYD-------FKTRICKKVC 120
Query: 63 GHFTQLVWRDSRYLGFGISRY-----VYNGTAVYIVVCNYDPAGNVVG 105
GH+TQ+VW DS +G + + +CNY P GN
Sbjct: 121 GHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNYPT 168
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland,
protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB:
3u3n_C* 3u3u_C*
Length = 233
Score = 69.3 bits (169), Expect = 5e-15
Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 10 GENLFKTASDDHLIKDPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLV 69
G+ FK + D ++++DAV + + + + + +
Sbjct: 105 GQLNFKYSGDKL--PRIKELIDDAVKKGHLQKHNIT-REIIENYRENGPNGDVKELALAI 161
Query: 70 WRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVG 105
+G G++ + A ++ CN+ N G
Sbjct: 162 SDRVTAVGCGLTTWEDGAKARALLTCNFSS-QNTRG 196
>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function;
2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A
Length = 206
Score = 48.9 bits (116), Expect = 8e-08
Identities = 8/87 (9%), Positives = 23/87 (26%), Gaps = 23/87 (26%)
Query: 25 DPVKVVEDAVDSWYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGISRYV 84
+ +++ ++++ ++ Q+V+ + G
Sbjct: 87 SAISALKEILETFSADK---------------------NSMRQVVYPKATRFGCSGRLRR 125
Query: 85 YNGTAVY--IVVCNYDPAGNVVGLYAS 109
T + VC YD +
Sbjct: 126 NKKTGMRRMDWVCVYDKKPKDGESFEG 152
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus}
SCOP: c.23.5.1
Length = 173
Score = 27.9 bits (62), Expect = 1.2
Identities = 16/125 (12%), Positives = 30/125 (24%), Gaps = 12/125 (9%)
Query: 4 STGT------KLGENLFKTASDDHLIKDPVKVVE-DAVDSWYSEISTYNDYGNPDTINTD 56
STG +G+ L A + D D + T+N + + T
Sbjct: 9 STGNTTEVADFIGKTLGAKADAPIDVDDVTDPQALKDYDLLFLGAPTWNTGADTERSGTS 68
Query: 57 TSRFCIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCNYDPAGNVVGLYASNVLKEGD 116
F ++ +D FG+ + G
Sbjct: 69 WDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDC-----FAKQGAKPVGF 123
Query: 117 WDDEG 121
+ +
Sbjct: 124 SNPDD 128
>1wth_D HUB protein 27, baseplate structural protein GP27; triple-stranded
beta-helix, OB fold, pseudohexamer, T4 tail HUB,
GP5-GP27; 2.80A {Enterobacteria phage T4} SCOP:
b.106.1.1 b.106.1.1 PDB: 1pdj_D 1k28_D 2z6b_D
Length = 391
Score = 27.4 bits (60), Expect = 3.1
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 9/131 (6%)
Query: 37 WYSEISTYNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVCN 96
W S Y Y + + +F VW+D + + N ++V
Sbjct: 162 WTSTFENYLSYVREVALAVGSDKFV------FVWQDIMGVNMMDYDMMINQEPYPMIVGE 215
Query: 97 YDPAGNVVGLYASNVLKEGDWDDEGPPEVFCPRR--TVYPHA-NDTQPPETYFHDDDGNI 153
G + + + W + P P + T+Y H+ D+ P + +I
Sbjct: 216 PSLIGQFIQELKYPLAYDFVWLTKSNPHKRDPMKNATIYAHSFLDSSIPMITTGKGENSI 275
Query: 154 IDLEGNVYVDT 164
+ Y +
Sbjct: 276 VVSRSGAYSEM 286
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 3.2
Identities = 23/161 (14%), Positives = 41/161 (25%), Gaps = 65/161 (40%)
Query: 12 NLFKTASDDHLIKDPVKV---------------------VEDAVD---SW-YSEIST--- 43
++ DH+I V VE+ + + S I T
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 44 --------YNDYGNPDTINTDTSRFCIGHFTQLVWRDSRYLGFGISRYVYNGTAVYIVVC 95
Y + + + D F + V R YL + +
Sbjct: 104 QPSMMTRMYIEQRDR--LYNDNQVFAKYN----VSRLQPYL------------KLRQALL 145
Query: 96 NYDPAGNVVGLY----------ASNVLKEGDWDDEGPPEVF 126
PA NV+ + A +V + ++F
Sbjct: 146 ELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein
STRU initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Length = 117
Score = 25.7 bits (56), Expect = 5.6
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 86 NGTAVYIVVCNYDP--AGNVVGLYASNVLKEGDWDD 119
+ I+ + N++ +YA N G W
Sbjct: 6 ANDKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKH 41
>1r9c_A Glutathione transferase; fosfomycin resistance protein, Mn binding,
antibiotic resist transferase; 1.83A {Mesorhizobium
loti} SCOP: d.32.1.2
Length = 139
Score = 25.2 bits (55), Expect = 9.4
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 144 TYFHDDDGNIIDLEGNVYVDTARYYLQRRANGQA 177
YF+DDD ++ E ++ T L R+A G
Sbjct: 107 IYFYDDDNHMF--E--LHTGTLTERLARKAKGLE 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.138 0.435
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,970,257
Number of extensions: 175869
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 27
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)