BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17205
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
++ WYKE KL + M+ + +LVI KV +D G Y+C AENS+G
Sbjct: 36 RIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVG 85
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
++ W K+ ++ M TL + KV D G Y+C A N GK +L
Sbjct: 228 KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287
Query: 99 KYP 101
+ P
Sbjct: 288 QEP 290
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
QV W+K+ +L + ++ + + ++ I V D G Y C A N +G
Sbjct: 415 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 464
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
+V+WYK+ ++ + + M L + + D G+Y+C A N+ G L
Sbjct: 322 KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381
Query: 99 KYP 101
K P
Sbjct: 382 KEP 384
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 39 QVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTD---FGNYSCVAENSMGKTRQY 93
QV WYK E LK D ++T H + ++L TD G Y+C A N +G
Sbjct: 132 QVSWYKDGELLKDDAN----LQT-SFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSS 186
Query: 94 LELS 97
+L+
Sbjct: 187 AKLT 190
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 38 PQVIWYKETLKLDTTERRI--METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + E RI ++ R ++ +LV+ V+ +D GNY+CV EN G RQ
Sbjct: 153 PSISWLKNGREF-RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT 211
Query: 96 L 96
L
Sbjct: 212 L 212
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 66 LVIRKVLFTDFGNYSCVAENSMG 88
L + V F D G Y+C+A NS+G
Sbjct: 293 LSLHNVTFEDAGEYTCLAGNSIG 315
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
P V W ++ L T+ R + T + T I V +D GNYS V ENS GK
Sbjct: 44 PTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK 95
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
P V W ++ L T+ R + T + T I V +D GNYS V ENS GK
Sbjct: 38 PTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK 89
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85
P V+W K +L +ER G H L++ L TD G Y C A N
Sbjct: 44 PVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
Length = 107
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85
P V+W K +L +ER G H L++ L TD G Y C A N
Sbjct: 43 PVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
Length = 109
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85
P V+W K +L +ER G H L++ L TD G Y C A N
Sbjct: 44 PVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 38 PQVIWYKETLKLDTTERRI--METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
P + W K + E RI ++ R ++ +LV+ V+ +D GNY+CV EN G RQ
Sbjct: 45 PSISWLKNGREF-RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 100
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 38 PQVIWY--KETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P V WY T++ D + I+ +G H+L+ V +D G Y+CVA+N G+ ++
Sbjct: 35 PDVSWYLNGRTVQSDDLHKMIVSEKGL-HSLIFEVVRASDAGAYACVAKNRAGEATFTVQ 93
Query: 96 L 96
L
Sbjct: 94 L 94
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
P + WY+ +L + + M + GR HTL + D G Y+C+A N +G+
Sbjct: 37 PDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGE 88
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 38 PQVIWYKETLKLD--TTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P++ W+K+ L +D T+ RI + R L I TD G Y CVA NS G
Sbjct: 138 PEITWFKDFLPVDPSTSNGRIKQLR--SGGLQIESSEETDQGKYECVASNSAG 188
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P++ W+K+ L +D + + R L I TD G Y CVA NS G
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFT--DFGNYSCVAENSMGKTRQYL 94
+P+V W K+ K+++ +E ++ + L T D Y CVA+NS+G+ +
Sbjct: 35 KPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHA 94
Query: 95 ELS 97
+L+
Sbjct: 95 KLT 97
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P++ W+K+ L +D + + R L I TD G Y CVA NS G
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFT--DFGNYSCVAENSMGKTRQYL 94
+P+V W K+ K+++ +E ++ + L T D Y CVA+NS+G+ +
Sbjct: 35 KPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHA 94
Query: 95 ELS 97
+L+
Sbjct: 95 KLT 97
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 38 PQVIWYKETLKLDTTER--RIMETRGRR-HTLVIRKVLFTDFGNYSCVAENSMG 88
P++ W+K+ L +DT+ RI + R L I + +D G Y CVA NS G
Sbjct: 138 PEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAG 191
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIME-TRGRRHTLVIRKVLFT-DFGNYSCVAENSMGK 89
RP+++W K+ K+ ++E G L I+ + D Y CVA N++G+
Sbjct: 35 RPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGE 89
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P++ W+K+ L +D + + R L I TD G Y CVA NS G
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFT--DFGNYSCVAENSMGKTRQYL 94
+P+V W K+ K+++ +E ++ + L T D Y CVA+NS+G+ +
Sbjct: 35 KPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHA 94
Query: 95 ELS 97
+L+
Sbjct: 95 KLT 97
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 29 FFFHFAFCRPQVI-WYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
FF A P+ I WY + K+ +T+R +++ G R L I D G Y C A ++
Sbjct: 19 FFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 78
Query: 87 MGKTRQ 92
G+T++
Sbjct: 79 KGQTQE 84
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 29 FFFHFAFCRPQVI-WYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
FF A P+ I WY + K+ +T+R +++ G R L I D G Y C A ++
Sbjct: 23 FFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 82
Query: 87 MGKTRQ 92
G+T++
Sbjct: 83 KGQTQE 88
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCV 82
++ WYK++L LD + + RG H L++ V D G Y CV
Sbjct: 156 KIQWYKDSLLLDKDNEKFLSVRGTTH-LLVHDVALEDAGYYRCV 198
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
+V W + + + + + T G RHTL +R+V D G+Y+ +A +S
Sbjct: 38 KVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGSS 85
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 29 FFFHFAFCRPQVI-WYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
FF A P+ I WY + K+ +T+R +++ G R L I D G Y C A ++
Sbjct: 21 FFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 80
Query: 87 MGKTRQ 92
G+T++
Sbjct: 81 KGQTQE 86
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 38 PQVIWYKETLKLD--TTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P++ W+K+ L +D T+ RI + R L I +D G Y CVA NS G
Sbjct: 138 PEISWFKDFLPVDPATSNGRIKQLR--SGALQIESSEESDQGKYECVATNSAG 188
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIME-TRGRRHTLVIRKV-LFTDFGNYSCVAENSMGKTRQYL 94
+P++ W K+ K+ + ++E G L I+ + + D Y C A NS+G+
Sbjct: 35 KPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSA 94
Query: 95 ELS 97
+LS
Sbjct: 95 KLS 97
>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From
Human Obscurin-Like Protein 1
Length = 104
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 42 WYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85
WYK+ K++ +E +++ GR+H L++ + D G + C E
Sbjct: 43 WYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEG 86
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P++ W+K+ L +D + R L I +D G Y CVA NS G
Sbjct: 139 PEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 189
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIME-TRGRRHTLVIRKV-LFTDFGNYSCVAENSMGKTRQYL 94
+P++ W K+ K+ + ++E G L I+ + + D Y C A NS+G+
Sbjct: 36 KPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSA 95
Query: 95 ELS 97
+LS
Sbjct: 96 KLS 98
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn
Protein
Length = 102
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 32 HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA 83
A + +V WYK+ KL ++ + +E G LV+++ + G YSC A
Sbjct: 34 EVAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEA 85
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P + W K K+D + R G L I D G Y CVAENSMG
Sbjct: 142 PNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQGKYECVAENSMG 189
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 38 PQVIWYKETLKLDTTERR--IMETRGRRHTLVIRKV-LFTDFGNYSCVAENSMG 88
P ++W K K+ T+ R ++E G L I V D Y CVAEN +G
Sbjct: 38 PSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVG 91
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 38 PQVIWY--KETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W + ++ D+ + ++ G H+L+I V D G Y+C+A N G+ LE
Sbjct: 39 PDLSWQLDGKPVRPDSAHKMLVRENGV-HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLE 97
Query: 96 L 96
L
Sbjct: 98 L 98
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P + W K K+D + R G L I D G Y CVAENSMG
Sbjct: 140 PNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQGKYECVAENSMG 187
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 38 PQVIWYKETLKLDTTERR--IMETRGRRHTLVIRKV-LFTDFGNYSCVAENSMG 88
P ++W K K+ T+ R ++E G L I V D Y CVAEN +G
Sbjct: 36 PSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVG 89
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 32 HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+ + P++ WYK + L++ T H L I +V D GNY+ + N + K +
Sbjct: 354 YLGYPPPEIKWYKNGIPLESNH-----TIKAGHVLTIMEVSERDTGNYTVILTNPISKEK 408
Query: 92 Q 92
Q
Sbjct: 409 Q 409
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
PQ++W+K+ L + I+ G R+ L IR+V D G Y+C A + +G
Sbjct: 696 PQIMWFKDNETL-VEDSGIVLKDGNRN-LTIRRVRKEDEGLYTCQACSVLG 744
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 27 LIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA 83
L H + V WYK+ +L + R +E G R L ++ D G Y C A
Sbjct: 14 LELVVHLSGPGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA 70
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 33.1 bits (74), Expect = 0.040, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 32 HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+ + P++ WYK + L++ T H L I +V D GNY+ + N + K +
Sbjct: 224 YLGYPPPEIKWYKNGIPLESNH-----TIKAGHVLTIMEVSERDTGNYTVILTNPISKEK 278
Query: 92 Q 92
Q
Sbjct: 279 Q 279
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 38 PQVIWYKETLK---LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P + Y + LK ++TT++ I L IR V F D G Y+C+A NS+G
Sbjct: 157 PDGLPYLKVLKAAGVNTTDKEI-------EVLYIRNVTFEDAGEYTCLAGNSIG 203
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 53 ERRIM--ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
E RI + R + +L+ V+ +D GNY+CV EN G L
Sbjct: 55 EHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHL 100
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGR-----RHTLVIRKVLFTDFGNYSCVAENSMG 88
P +IW K+ + LD + R L+I V D GNY C+A+N +G
Sbjct: 139 PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLF----TDFGNYSCVAENSMGKT 90
P + W+K+ + T E++ + + L + + D G Y CVA+N +G+
Sbjct: 39 PTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGR-----RHTLVIRKVLFTDFGNYSCVAENSMG 88
P +IW K+ + LD + R L+I V D GNY C+A+N +G
Sbjct: 139 PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLF----TDFGNYSCVAENSMGKT 90
P + W+K+ + T E++ + + L + + D G Y CVA+N +G+
Sbjct: 39 PTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 38 PQVIWYKETLK---LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P + Y + LK ++TT++ I L IR V F D G Y+C+A NS+G
Sbjct: 157 PDGLPYLKVLKAAGVNTTDKEI-------EVLYIRNVTFEDAGEYTCLAGNSIG 203
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 38 PQVIWYKETLKLDTTERRIM--ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + E RI + R + +L++ V+ +D GNY+CV EN G
Sbjct: 41 PTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 99
Query: 96 L 96
L
Sbjct: 100 L 100
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 33 FAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
A P V W+K+ +L + + + G + L I +V D G Y+ A+NS G
Sbjct: 401 IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG 456
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 38 PQVIWYKETLK---LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P + Y + LK ++TT++ I L IR V F D G Y+C+A NS+G
Sbjct: 156 PDGLPYLKVLKAAGVNTTDKEI-------EVLYIRNVTFEDAGEYTCLAGNSIG 202
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 38 PQVIWYKETLKLDTTERRIM--ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + E RI + R + +L++ V+ +D GNY+CV EN G
Sbjct: 40 PTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 98
Query: 96 L 96
L
Sbjct: 99 L 99
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 38 PQVIWYKETLK---LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P + Y + LK ++TT++ I L IR V F D G Y+C+A NS+G
Sbjct: 155 PDGLPYLKVLKAAGVNTTDKEI-------EVLYIRNVTFEDAGEYTCLAGNSIG 201
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 38 PQVIWYKETLKLDTTERRIM--ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + E RI + R + +L++ V+ +D GNY+CV EN G
Sbjct: 39 PTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 97
Query: 96 L 96
L
Sbjct: 98 L 98
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 33 FAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
A P V W+K+ +L + + + G + L I +V D G Y+ A+NS G
Sbjct: 507 IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG 562
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 38 PQVIWYKETLK---LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P + Y + LK ++TT++ I L IR V F D G Y+C+A NS+G
Sbjct: 157 PDGLPYLKVLKAAGVNTTDKEI-------EVLYIRNVTFEDAGEYTCLAGNSIG 203
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 38 PQVIWYKETLKLDTTERRIM--ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + E RI + R + +L++ V+ +D GNY+CV EN G
Sbjct: 41 PTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 99
Query: 96 L 96
L
Sbjct: 100 L 100
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 38 PQVIWYKETLK---LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P + Y + LK ++TT++ I L IR V F D G Y+C+A NS+G
Sbjct: 157 PDGLPYLKVLKAAGVNTTDKEI-------EVLYIRNVTFEDAGEYTCLAGNSIG 203
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 38 PQVIWYKETLKLDTTERRI--METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ--Y 93
P + W K + E RI + R + +L++ V+ +D GNY+CV EN G +
Sbjct: 41 PTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 99
Query: 94 LELSGKYPN 102
L++ ++P+
Sbjct: 100 LDVVERWPH 108
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P + W KE + R T + TL I+ + +D G Y+CVA +S G+T
Sbjct: 38 PVISWLKEGFTFPGRDPR--ATIQEQGTLQIKNLRISDTGTYTCVATSSSGETS 89
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 32.3 bits (72), Expect = 0.060, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
RP V W ++ L + R +E G L K++ D G Y CVAEN G EL
Sbjct: 323 RPAVRWLRDGQPLASQNR--IEVSGGE--LRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378
Query: 97 S 97
+
Sbjct: 379 T 379
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 31 FHFAFCRPQVIWYKETLKLDTTE-RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
F F PQ+ W K LD ++ + + + H I+ V F D G Y C AEN G+
Sbjct: 230 FAFGNPVPQIKWRK----LDGSQTSKWLSSEPLLH---IQNVDFEDEGTYECEAENIKGR 282
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT--RQYLE 95
P ++W K+ + + T + RI + L IR D G Y+C+A G+ Y+E
Sbjct: 38 PTILWRKDGVLVSTQDSRIKQLE--NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIE 95
Query: 96 L 96
+
Sbjct: 96 V 96
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 38 PQVIWYKETLKLDTTERRI--METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + E RI + R + +L++ V+ +D GNY+CV EN G
Sbjct: 49 PTMRWLKNGKEF-KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 107
Query: 96 L 96
L
Sbjct: 108 L 108
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 42 WYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN---SMGKTRQYLELSG 98
WYK +++ ++R + GR H LVI V D G+Y+ V + S+ +LE+
Sbjct: 41 WYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKV 100
Query: 99 KYPNA 103
P++
Sbjct: 101 SGPSS 105
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 38 PQVIWYKETLKLDTTERRIM--ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + E RI + R + +L++ V+ +D GNY+CV EN G
Sbjct: 49 PTMRWLKNGKEF-KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 107
Query: 96 L 96
L
Sbjct: 108 L 108
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 38 PQVIWYKETLKLDTTERRI--METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + E RI + R + +L++ V+ +D GNY+CV EN G
Sbjct: 38 PTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 96
Query: 96 LS 97
L
Sbjct: 97 LD 98
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 38 PQVIWYKETLKLDTTERRI--METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + E RI + R + +L++ V+ +D GNY+CV EN G
Sbjct: 42 PTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 100
Query: 96 L 96
L
Sbjct: 101 L 101
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
+P W K L T +R +E + TL I V +D G Y CVAEN G EL
Sbjct: 324 KPTYRWLKNGDPLLTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379
Query: 97 S 97
S
Sbjct: 380 S 380
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 31 FHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
F P ++W + K + R ++ G L I D G+Y CVAENS GK
Sbjct: 228 FALGNPVPTILWRRADGKPIARKARRHKSNG---ILEIPNFQQEDAGSYECVAENSRGKN 284
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSM 87
L I KV +D GNY+CV N++
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTV 180
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 38 PQVIWYKETLKLDTTERRI--METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + E RI + R + +L++ V+ +D GNY+CV EN G
Sbjct: 43 PTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 101
Query: 96 L 96
L
Sbjct: 102 L 102
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
+P W K L T +R +E + TL I V +D G Y CVAEN G EL
Sbjct: 323 KPTYRWLKNGDPLLTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 378
Query: 97 S 97
S
Sbjct: 379 S 379
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 31 FHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
F P ++W + K + R ++ G L I D G+Y CVAENS GK
Sbjct: 227 FALGNPVPTILWRRADGKPIARKARRHKSNG---ILEIPNFQQEDAGSYECVAENSRGKN 283
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSM 87
L I KV +D GNY+CV N++
Sbjct: 157 NLYIAKVEKSDVGNYTCVVTNTV 179
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
+ + W K+ + + + R +E++G + + + + D G YSC ++ G YL
Sbjct: 31 KSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL 88
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+P V W K L R + G +L I V D G Y CVA+NS+G
Sbjct: 129 KPSVSWIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLG 177
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 34 AFCRPQVIWYKETLKL---DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
F P + W K+ + D E+ G L+I+KV +D Y C+AEN G+
Sbjct: 39 GFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSE--LIIKKVDKSDEAEYICIAENKAGEQ 96
Query: 91 RQYLEL 96
+ L
Sbjct: 97 DATIHL 102
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 34 AFCRPQVIWYKETLKLDTTERRIMETRGRR--HTLVIRKVLFTDFGNYSCVAENSMG 88
F P WYK + ++ R ++ TL+I+ + D G Y CV NS+G
Sbjct: 244 GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG 300
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 34 AFCRPQVIWYKETLKLDTTERRIMETRGRR--HTLVIRKVLFTDFGNYSCVAENSMG 88
F P WYK + ++ R ++ TL+I+ + D G Y CV NS+G
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG 294
>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578k
Length = 91
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 40 VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA 83
V WYK+ +++ ++ ++E G LV+ +D G + CVA
Sbjct: 37 VRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVA 80
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 53 ERRIM--ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
E RI + R + +L+ V+ +D GNY+CV EN G L
Sbjct: 62 EHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHL 107
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
P + W K+ LD + RI G+ L+I +D G Y CV N +G+
Sbjct: 142 PTISWKKDGSPLDDKDERITIRGGK---LMITYTRKSDAGKYVCVGTNMVGE 190
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 42 WYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNY 79
W K L + ++R + +GR H LVI L D G+Y
Sbjct: 39 WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDY 76
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSMGK 89
TL + +V F GNYSCVA N GK
Sbjct: 246 TLNLDQVDFQHAGNYSCVASNVQGK 270
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 45 ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+T ++TT++ + L +R V F D G Y+C+A NS+G
Sbjct: 173 KTAGVNTTDKEM-------EVLHLRNVSFEDAGEYTCLAGNSIG 209
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
++++ V+ +D GNY+C+ EN G +L
Sbjct: 75 SIIMDSVVPSDKGNYTCIVENEYGSINHTYQL 106
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 29 FFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM 87
F H P ++ W K+ ++ M TL + KV D G Y+C A N
Sbjct: 25 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84
Query: 88 GKTRQYLELSGKYP 101
GK +L + P
Sbjct: 85 GKDSCSAQLGVQAP 98
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
QV W+K+ +L + ++ + + ++ I V D G Y C A N +G
Sbjct: 223 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
+V+WYK+ ++ + + M L + + D G+Y+C A N+ G L
Sbjct: 130 KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 189
Query: 99 KYP 101
K P
Sbjct: 190 KEP 192
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 45 ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+T ++TT++ + L +R V F D G Y+C+A NS+G
Sbjct: 172 KTAGVNTTDKEM-------EVLHLRNVSFEDAGEYTCLAGNSIG 208
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
++++ V+ +D GNY+C+ EN G +L
Sbjct: 74 SIIMDSVVPSDKGNYTCIVENEYGSINHTYQL 105
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 45 ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+T ++TT++ + L +R V F D G Y+C+A NS+G
Sbjct: 172 KTAGVNTTDKEM-------EVLHLRNVSFEDAGEYTCLAGNSIG 208
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
++++ V+ +D GNY+C+ EN G +L
Sbjct: 74 SIIMDSVVPSDKGNYTCIVENEYGSINHTYQL 105
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 42 WYKETLKL---DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
W ++ L L +TT + T GR+ L I DFG Y+C A N +G Q
Sbjct: 134 WRRDKLVLPAKNTTNLKTYST-GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQ 186
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 34 AFCRPQVIWYKETLKLDTTERRIMETRGRR--HTLVIRKVLFTDFGNYSCVAENSMG 88
++ P WYK + ++ R ++ TL+I+ + D G Y CV NS+G
Sbjct: 241 SYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG 297
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
P + WYK+ L + + + L I V D G Y C+A N MG R + +
Sbjct: 252 PDIAWYKKGGDLPSDKAKF---ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVR 308
Query: 98 GK 99
K
Sbjct: 309 VK 310
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 29 FFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM 87
F H P ++ W K+ ++ M TL + KV D G Y+C A N
Sbjct: 25 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84
Query: 88 GKTRQYLELSGKYP 101
GK +L + P
Sbjct: 85 GKDSCSAQLGVQEP 98
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
QV W+K+ +L + ++ + + ++ I V D G Y C A N +G
Sbjct: 223 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
+V+WYK+ ++ + + M L + + D G+Y+C A N+ G L
Sbjct: 130 KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 189
Query: 99 KYP 101
K P
Sbjct: 190 KEP 192
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 38 PQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
PQ++W+K ETL D+ I+ G R+ L IR+V D G Y+C A + +G
Sbjct: 40 PQIMWFKDNETLVEDSG---IVLKDGNRN-LTIRRVRKEDEGLYTCQACSVLG 88
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 38 PQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P+V+W+K+ + + +I +L I +V D Y+C A NS+G+ EL
Sbjct: 71 PEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 38 PQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P+V+W+K+ + + +I +L I +V D Y+C A NS+G+ EL
Sbjct: 71 PEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
RP IW K+ + + ++ E +G L I K +D G Y+C +NS G +
Sbjct: 35 RPTAIWTKDGKAITQGGKYKLSEDKGGFF-LEIHKTDTSDSGLYTCTVKNSAGSVSSSCK 93
Query: 96 LS 97
L+
Sbjct: 94 LT 95
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P V +Y++ ++ ++ + G ++L+I + D G YS A NS+G+ EL
Sbjct: 133 PVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P V +Y++ ++ ++ + G ++L+I + D G YS A NS+G+ EL
Sbjct: 133 PVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSMGK 89
TL I V F D G Y C AENS G+
Sbjct: 257 TLQIPSVSFEDEGTYECEAENSKGR 281
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
RP V W + L ++ R+ G L K+ D G Y CVAEN G EL
Sbjct: 322 RPTVRWLRNGEPL-ASQNRVEVLAG---DLRFSKLSLEDSGMYQCVAENKHGTIYASAEL 377
Query: 97 S 97
+
Sbjct: 378 A 378
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 40 VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCV 82
V W K L +R + G R L IR + D G YSCV
Sbjct: 38 VEWRKGHETLRDGDRHSLRQDGSRCELQIRGLAVVDAGEYSCV 80
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 42 WYKETLKL---DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
W ++ L L +TT + T GR+ L I DFG Y+C A N +G
Sbjct: 134 WRRDKLVLPAKNTTNLKTYST-GRKMILEIAPTSDNDFGRYNCTATNHIG 182
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRR--HTLVIRKVLFTDFGNYSCVAENSMG 88
P WYK + ++ R ++ TL+I+ + D G Y CV NS+G
Sbjct: 278 PVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG 330
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
QV WY +L+ +E+ + L ++ + D G Y C N G+ Y EL
Sbjct: 32 TQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAEL 90
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 40 VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGK 99
V W K+ + +++ + G LVIR D G Y+C E S ++E
Sbjct: 39 VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTASLHVEEKAS 98
Query: 100 YPNA 103
P++
Sbjct: 99 GPSS 102
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 40 VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCV 82
V W K + L +R + G + L IR + D G YSCV
Sbjct: 38 VEWRKGSETLRDGDRYSLRQDGTKCELQIRGLAMADTGEYSCV 80
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 66 LVIRKVLFTDFGNYSCVAENSMGK 89
L I+ L D G Y+C+AEN++G+
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQ 89
>pdb|1ZLS|L Chain L, Fab 2g12 + Man4
pdb|1ZLU|L Chain L, Fab 2g12 + Man5
pdb|1ZLU|K Chain K, Fab 2g12 + Man5
pdb|1ZLV|L Chain L, Fab 2g12 + Man7
pdb|1ZLV|K Chain K, Fab 2g12 + Man7
pdb|1ZLW|L Chain L, Fab 2g12 + Man8
pdb|1ZLW|K Chain K, Fab 2g12 + Man8
pdb|2OQJ|A Chain A, Crystal Structure Analysis Of Fab 2g12 In Complex With
Peptide 2g12.1
pdb|2OQJ|D Chain D, Crystal Structure Analysis Of Fab 2g12 In Complex With
Peptide 2g12.1
pdb|2OQJ|G Chain G, Crystal Structure Analysis Of Fab 2g12 In Complex With
Peptide 2g12.1
pdb|2OQJ|J Chain J, Crystal Structure Analysis Of Fab 2g12 In Complex With
Peptide 2g12.1
Length = 211
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 38 PQVIWYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSC 81
P+++ YK TLK R G TL I + F DF Y C
Sbjct: 43 PKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHC 87
>pdb|1OM3|L Chain L, Fab 2g12 Unliganded
pdb|1OM3|M Chain M, Fab 2g12 Unliganded
pdb|1OP3|L Chain L, Crystal Structure Of Fab 2g12 Bound To Man1->2man
pdb|1OP3|K Chain K, Crystal Structure Of Fab 2g12 Bound To Man1->2man
pdb|1OP5|L Chain L, Crystal Structure Of Fab 2g12 Bound To Man9glcnac2
pdb|1OP5|K Chain K, Crystal Structure Of Fab 2g12 Bound To Man9glcnac2
pdb|3OAU|L Chain L, Antibody 2g12 Recognizes Di-Mannose Equivalently In
Domain- And Non- Domain-Exchanged Forms, But Only Binds
The Hiv-1 Glycan Shield If Domain-Exchanged
Length = 212
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 38 PQVIWYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSC 81
P+++ YK TLK R G TL I + F DF Y C
Sbjct: 43 PKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHC 87
>pdb|3OAY|K Chain K, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OAY|L Chain L, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OAZ|K Chain K, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OAZ|L Chain L, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OB0|L Chain L, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OB0|K Chain K, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
Length = 213
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 38 PQVIWYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSC 81
P+++ YK TLK R G TL I + F DF Y C
Sbjct: 44 PKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHC 88
>pdb|1H5B|A Chain A, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 60 RGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
R R TL IR D G Y C AE S G
Sbjct: 67 RARYSTLHIRDAQLEDSGTYFCAAEASSGS 96
>pdb|1FGV|L Chain L, X-Ray Structures Of Fragments From Binding And
Nonbinding Versions Of A Humanized Anti-Cd18 Antibody:
Structural Indications Of The Key Role Of Vh Residues
59 To 65
Length = 109
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 40 VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
+I+Y TL+ R G +TL I + DF Y C N++ T
Sbjct: 47 LIYYTSTLESGVPSRFSGSGSGTDYTLTISSLQPEDFATYYCQQGNTLPPT 97
>pdb|3QIU|C Chain C, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|C Chain C, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
Length = 205
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 54 RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
+ +++ R TL IR D G Y C AE S G+
Sbjct: 62 KSAFDSKERYSTLHIRDAQLEDSGTYFCAAEPSSGQ 97
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 33 FAFCRPQVIWYKETLKLDTTER---RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
FA+ + W+++ L ++ +I T + L + DFGNY+C A N +G+
Sbjct: 43 FAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASY-LEVTPDSENDFGNYNCTAVNRIGQ 101
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 66 LVIRKVLFTDFGNYSCVAENSMG 88
L + V F D G YSCVA N +G
Sbjct: 247 LSLNAVDFQDAGIYSCVASNDVG 269
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 66 LVIRKVLFTDFGNYSCVAENSMG 88
L + V F D G YSCVA N +G
Sbjct: 247 LSLNAVDFQDAGIYSCVASNDVG 269
>pdb|2FGW|L Chain L, X-Ray Structures Of Fragments From Binding And
Nonbinding Versions Of A Humanized Anti-Cd18 Antibody:
Structural Indications Of The Key Role Of Vh Residues
59 To 65
Length = 214
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 40 VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
+I+Y TL R G +TL I + DF Y C N++ T
Sbjct: 47 LIYYTSTLHSGVPSRFSGSGSGTDYTLTISSLQPEDFATYYCQQGNTLPPT 97
>pdb|3LD8|B Chain B, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|B Chain B, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 220
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 40 VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSC 81
+I+Y TL +R G +TL I V D G Y C
Sbjct: 53 LIYYASTLFTGVPDRFTGSGSGTDYTLTITSVQAEDMGQYFC 94
>pdb|1H5B|C Chain C, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 54 RRIMETRGRRH-TLVIRKVLFTDFGNYSCVAENSMGK 89
+ +++ RR+ TL IR D G Y C AE S G
Sbjct: 60 KSAFDSKERRYSTLHIRDAQLEDSGTYFCAAEASSGS 96
>pdb|1H5B|B Chain B, T Cell Receptor Valpha11 (Av11s5) Domain
pdb|1H5B|D Chain D, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 54 RRIMETRGRRH-TLVIRKVLFTDFGNYSCVAENSMG 88
+ +++ RR+ TL IR D G Y C AE S G
Sbjct: 60 KSAFDSKERRYSTLHIRDAQLEDSGTYFCAAEASSG 95
>pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin
Binding Proteinc
pdb|2YUV|A Chain A, Solution Structure Of 2nd Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 27/66 (40%)
Query: 29 FFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
F A + +V WYK ++ + + I E +G + L I TD Y A +
Sbjct: 28 FVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKC 87
Query: 89 KTRQYL 94
T ++
Sbjct: 88 STELFV 93
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNY 79
RPQV+W K LDT+ R + T +R+ +D G Y
Sbjct: 53 RPQVVWTKGGAPLDTS-RVHVRTSDFDTVFFVRQAARSDSGEY 94
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 66 LVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
L I V+ +D G Y CVAEN G + +L
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397
>pdb|4DEP|C Chain C, Structure Of The Il-1b Signaling Complex
pdb|4DEP|F Chain F, Structure Of The Il-1b Signaling Complex
Length = 349
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 40 VIWY--------KETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
+IWY +E + E RI + + L R L D GNY+C+ N+
Sbjct: 50 LIWYWTRQDRDLEEPINFRLPENRISK---EKDVLWFRPTLLNDTGNYTCMLRNT 101
>pdb|3O4O|B Chain B, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 40 VIWY--------KETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
+IWY +E + E RI + + L R L D GNY+C+ N+
Sbjct: 51 LIWYWTRQDRDLEEPINFRLPENRISK---EKDVLWFRPTLLNDTGNYTCMLRNT 102
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSMGKT 90
TL V D G Y+C+ NS+G T
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNT 423
>pdb|2EDK|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Myosin-Binding Protein C, Fast-Type
Length = 101
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 38 PQVIWYKETLKLDTTE----RRIMETRGRRHTLVIRKVLFTDFGNYSCV 82
QV+W K ++L + R + G+RH L+ V+ D G Y +
Sbjct: 37 AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVI 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,620,747
Number of Sequences: 62578
Number of extensions: 77547
Number of successful extensions: 437
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 154
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)