Query psy17205
Match_columns 106
No_of_seqs 106 out of 1739
Neff 12.0
Searched_HMMs 46136
Date Sat Aug 17 00:34:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05762 Ig8_MLCK Eighth immuno 99.9 1.2E-20 2.6E-25 93.4 13.7 94 8-102 1-94 (98)
2 cd05747 Ig5_Titin_like M5, fif 99.8 8.7E-19 1.9E-23 85.9 12.7 89 7-96 3-91 (92)
3 PF07679 I-set: Immunoglobulin 99.8 5.8E-18 1.2E-22 82.6 13.4 89 8-97 1-89 (90)
4 cd05737 Ig_Myomesin_like_C C-t 99.8 6.9E-18 1.5E-22 82.7 12.7 83 14-97 8-91 (92)
5 cd05851 Ig3_Contactin-1 Third 99.8 2.1E-18 4.6E-23 83.8 10.4 86 8-98 2-87 (88)
6 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 1.5E-17 3.2E-22 80.5 13.1 81 16-97 4-85 (86)
7 cd05852 Ig5_Contactin-1 Fifth 99.8 1.7E-17 3.6E-22 78.0 9.6 72 22-97 1-72 (73)
8 cd05745 Ig3_Peroxidasin Third 99.8 1.5E-17 3.3E-22 78.5 9.5 73 21-97 1-73 (74)
9 cd04972 Ig_TrkABC_d4 Fourth do 99.8 1.8E-16 3.9E-21 77.4 12.9 84 13-97 6-89 (90)
10 cd05735 Ig8_DSCAM Eight immuno 99.8 2.5E-16 5.5E-21 76.5 12.9 81 22-103 1-86 (88)
11 cd05728 Ig4_Contactin-2-like F 99.8 5.6E-17 1.2E-21 78.4 10.3 81 12-97 4-84 (85)
12 cd05748 Ig_Titin_like Immunogl 99.8 1.4E-16 3E-21 75.2 11.3 72 25-97 2-73 (74)
13 cd05891 Ig_M-protein_C C-termi 99.8 2.8E-16 6.1E-21 77.0 12.1 84 13-97 7-91 (92)
14 cd05869 Ig5_NCAM-1 Fifth immun 99.7 3.8E-16 8.3E-21 77.2 12.5 89 8-97 3-96 (97)
15 cd04968 Ig3_Contactin_like Thi 99.7 3E-16 6.4E-21 76.3 11.6 84 9-97 3-86 (88)
16 cd05730 Ig3_NCAM-1_like Third 99.7 4.5E-16 9.8E-21 76.7 11.5 81 16-99 12-93 (95)
17 cd05892 Ig_Myotilin_C C-termin 99.7 2.7E-16 5.9E-21 74.2 10.1 72 25-97 1-74 (75)
18 cd04969 Ig5_Contactin_like Fif 99.7 2.7E-16 5.8E-21 74.0 9.9 72 22-97 1-72 (73)
19 cd05859 Ig4_PDGFR-alpha Fourth 99.7 6.6E-16 1.4E-20 76.7 11.3 82 16-98 12-99 (101)
20 cd05743 Ig_Perlecan_D2_like Im 99.7 4.3E-16 9.2E-21 74.2 10.2 71 22-93 1-71 (78)
21 cd05723 Ig4_Neogenin Fourth im 99.7 6E-16 1.3E-20 72.4 10.4 70 24-97 1-70 (71)
22 cd04975 Ig4_SCFR_like Fourth i 99.7 1.7E-15 3.8E-20 75.2 12.5 84 15-98 11-99 (101)
23 cd05870 Ig5_NCAM-2 Fifth immun 99.7 1.8E-15 3.9E-20 74.9 11.9 88 8-97 3-97 (98)
24 cd05746 Ig4_Peroxidasin Fourth 99.7 2.5E-16 5.5E-21 73.3 8.2 68 25-96 1-68 (69)
25 cd05857 Ig2_FGFR Second immuno 99.7 1.7E-15 3.6E-20 73.2 11.3 80 17-97 4-84 (85)
26 cd05732 Ig5_NCAM-1_like Fifth 99.7 2E-15 4.4E-20 74.5 11.8 88 8-97 3-95 (96)
27 cd05866 Ig1_NCAM-2 First immun 99.7 2.8E-15 6.2E-20 73.3 12.1 83 12-96 5-89 (92)
28 cd05867 Ig4_L1-CAM_like Fourth 99.7 1.3E-15 2.8E-20 72.2 10.5 72 22-98 1-75 (76)
29 cd05865 Ig1_NCAM-1 First immun 99.7 2.7E-15 5.8E-20 73.9 11.5 84 13-97 6-94 (96)
30 cd05863 Ig2_VEGFR-3 Second imm 99.7 7E-16 1.5E-20 71.1 8.8 64 25-97 1-64 (67)
31 cd05744 Ig_Myotilin_C_like Imm 99.7 2.6E-15 5.7E-20 70.9 10.6 72 25-97 1-74 (75)
32 cd04978 Ig4_L1-NrCAM_like Four 99.7 1.3E-15 2.8E-20 72.1 9.6 75 22-98 1-75 (76)
33 cd05893 Ig_Palladin_C C-termin 99.7 2.2E-15 4.8E-20 71.1 10.2 72 25-97 1-74 (75)
34 cd04973 Ig1_FGFR First immunog 99.7 2.3E-15 4.9E-20 71.8 10.0 77 15-97 2-78 (79)
35 cd07693 Ig1_Robo First immunog 99.7 7.3E-15 1.6E-19 72.8 12.1 89 7-96 1-97 (100)
36 cd05854 Ig6_Contactin-2 Sixth 99.7 8.4E-15 1.8E-19 70.7 11.8 78 23-101 1-84 (85)
37 cd05758 Ig5_KIRREL3-like Fifth 99.7 1.4E-14 3.1E-19 71.7 12.8 88 7-96 2-97 (98)
38 cd04971 Ig_TrKABC_d5 Fifth dom 99.7 4.2E-15 9.1E-20 71.1 10.4 70 27-97 3-79 (81)
39 cd05868 Ig4_NrCAM Fourth immun 99.7 3.2E-15 7E-20 70.8 9.8 74 22-98 1-75 (76)
40 cd04976 Ig2_VEGFR Second immun 99.7 2E-15 4.4E-20 70.6 8.8 68 25-97 1-68 (71)
41 cd05739 Ig3_RPTP_IIa_LAR_like 99.7 3.6E-15 7.9E-20 69.3 9.6 68 22-96 1-68 (69)
42 cd05876 Ig3_L1-CAM Third immun 99.7 1.9E-15 4.1E-20 70.7 8.6 70 25-98 1-70 (71)
43 cd05764 Ig_2 Subgroup of the i 99.7 4.9E-15 1.1E-19 69.8 9.9 72 22-97 1-73 (74)
44 cd05773 Ig8_hNephrin_like Eigh 99.7 3.7E-14 8.1E-19 71.4 13.1 80 21-101 22-107 (109)
45 cd05736 Ig2_Follistatin_like S 99.7 7.5E-15 1.6E-19 69.5 10.0 73 26-99 2-74 (76)
46 cd05740 Ig_CEACAM_D4 Fourth im 99.7 1.3E-14 2.9E-19 70.8 10.9 80 13-97 9-89 (91)
47 cd05855 Ig_TrkB_d5 Fifth domai 99.7 8.9E-15 1.9E-19 69.4 9.8 70 27-97 3-77 (79)
48 cd05856 Ig2_FGFRL1-like Second 99.7 7.2E-15 1.6E-19 70.4 9.6 78 17-97 4-81 (82)
49 cd05726 Ig4_Robo Fhird immunog 99.7 8.5E-15 1.8E-19 71.5 9.9 75 22-100 1-83 (90)
50 cd05864 Ig2_VEGFR-2 Second imm 99.6 4.2E-15 9.2E-20 69.2 8.3 66 26-97 2-67 (70)
51 cd04970 Ig6_Contactin_like Six 99.6 1.8E-14 4E-19 69.6 10.7 78 23-101 1-84 (85)
52 cd05849 Ig1_Contactin-1 First 99.6 3.4E-14 7.3E-19 69.7 11.5 80 8-92 2-86 (93)
53 cd05848 Ig1_Contactin-5 First 99.6 2.5E-14 5.5E-19 70.3 10.7 81 9-92 3-87 (94)
54 cd05731 Ig3_L1-CAM_like Third 99.6 8.6E-15 1.9E-19 68.4 8.4 70 25-98 1-70 (71)
55 cd05724 Ig2_Robo Second immuno 99.6 4.4E-14 9.5E-19 68.3 11.0 75 14-92 3-79 (86)
56 cd05725 Ig3_Robo Third immunog 99.6 1.6E-14 3.4E-19 67.2 9.0 68 25-97 1-68 (69)
57 cd05763 Ig_1 Subgroup of the i 99.6 1.6E-14 3.5E-19 68.2 8.1 70 26-98 2-74 (75)
58 cd05850 Ig1_Contactin-2 First 99.6 2E-13 4.2E-18 67.2 12.1 79 9-92 3-87 (94)
59 cd05760 Ig2_PTK7 Second immuno 99.6 4.7E-14 1E-18 66.9 9.6 70 25-97 1-73 (77)
60 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 4.6E-14 9.9E-19 66.5 9.3 63 25-91 1-65 (74)
61 cd05750 Ig_Pro_neuregulin Immu 99.6 3.7E-14 8E-19 66.9 8.9 71 25-95 1-74 (75)
62 cd05853 Ig6_Contactin-4 Sixth 99.6 7.9E-14 1.7E-18 67.1 9.8 80 23-102 1-85 (85)
63 cd05898 Ig5_KIRREL3 Fifth immu 99.6 3.7E-13 7.9E-18 66.3 12.3 88 7-96 2-97 (98)
64 cd04977 Ig1_NCAM-1_like First 99.6 3.5E-13 7.6E-18 66.0 12.2 83 12-96 5-90 (92)
65 cd05858 Ig3_FGFR-2 Third immun 99.6 1E-13 2.2E-18 67.6 10.0 75 22-97 1-88 (90)
66 cd05722 Ig1_Neogenin First imm 99.6 1.9E-13 4.1E-18 67.3 10.8 75 13-91 5-87 (95)
67 cd05749 Ig2_Tyro3_like Second 99.6 8.6E-14 1.9E-18 66.5 8.7 72 12-92 3-75 (81)
68 cd05756 Ig1_IL1R_like First im 99.6 4.9E-14 1.1E-18 69.2 7.9 79 16-97 8-93 (94)
69 cd05765 Ig_3 Subgroup of the i 99.6 9.1E-14 2E-18 66.5 8.7 74 22-97 1-80 (81)
70 cd04974 Ig3_FGFR Third immunog 99.6 1.4E-13 3E-18 67.2 9.0 76 22-98 1-89 (90)
71 cd07702 Ig2_VEGFR-1 Second imm 99.6 1.9E-13 4E-18 63.9 9.0 67 26-97 2-69 (72)
72 cd05874 Ig6_NrCAM Sixth immuno 99.6 1.5E-13 3.3E-18 65.2 8.6 65 25-92 1-71 (77)
73 cd05733 Ig6_L1-CAM_like Sixth 99.6 6.9E-14 1.5E-18 66.4 7.4 67 25-92 1-71 (77)
74 cd05895 Ig_Pro_neuregulin-1 Im 99.5 3.9E-13 8.5E-18 63.6 9.3 70 25-94 1-74 (76)
75 cd05729 Ig2_FGFR_like Second i 99.5 1.6E-12 3.5E-17 62.6 11.7 80 17-97 4-84 (85)
76 cd05875 Ig6_hNeurofascin_like 99.5 4.2E-13 9.1E-18 63.7 8.7 65 25-92 1-71 (77)
77 KOG3513|consensus 99.5 5.2E-13 1.1E-17 86.6 11.7 93 4-101 328-423 (1051)
78 cd05742 Ig1_VEGFR_like First i 99.5 7.4E-13 1.6E-17 63.8 9.1 75 22-97 1-82 (84)
79 cd04967 Ig1_Contactin First Ig 99.5 1.4E-12 3E-17 63.7 10.2 79 9-92 3-87 (91)
80 cd05861 Ig1_PDGFR-alphabeta Fr 99.5 1.6E-12 3.4E-17 62.7 10.1 76 22-98 1-82 (84)
81 cd05873 Ig_Sema4D_like Immunog 99.5 3.7E-12 8.1E-17 61.5 10.3 67 14-86 3-70 (87)
82 cd05752 Ig1_FcgammaR_like Frst 99.5 1.3E-12 2.7E-17 62.1 8.5 66 9-86 2-68 (78)
83 cd05882 Ig1_Necl-1 First (N-te 99.5 5.6E-12 1.2E-16 62.0 10.6 71 15-86 5-84 (95)
84 cd05734 Ig7_DSCAM Seventh immu 99.5 2.1E-12 4.6E-17 61.5 8.8 63 25-91 1-71 (79)
85 cd05754 Ig3_Perlecan_like Thir 99.5 2.9E-12 6.2E-17 61.9 9.0 78 13-96 7-84 (85)
86 cd07701 Ig1_Necl-3 First (N-te 99.4 1.9E-11 4.1E-16 60.2 10.9 72 14-86 4-84 (95)
87 smart00409 IG Immunoglobulin. 99.4 6.6E-11 1.4E-15 56.5 12.7 81 16-97 3-84 (86)
88 smart00410 IG_like Immunoglobu 99.4 6.6E-11 1.4E-15 56.5 12.7 81 16-97 3-84 (86)
89 cd05757 Ig2_IL1R_like Second i 99.4 8.7E-12 1.9E-16 61.0 9.2 74 17-94 5-82 (92)
90 cd04979 Ig_Semaphorin_C Immuno 99.4 5.8E-12 1.3E-16 61.3 8.5 79 14-98 3-86 (89)
91 cd05753 Ig2_FcgammaR_like Seco 99.4 1.3E-11 2.8E-16 59.3 7.8 66 17-90 9-74 (83)
92 KOG4194|consensus 99.4 6.6E-12 1.4E-16 78.0 8.2 94 7-101 612-706 (873)
93 cd07690 Ig1_CD4 First immunogl 99.4 1.8E-11 4E-16 60.0 7.9 72 17-89 2-90 (94)
94 cd05727 Ig2_Contactin-2-like S 99.3 9.7E-12 2.1E-16 61.0 6.6 71 17-89 13-85 (96)
95 smart00408 IGc2 Immunoglobulin 99.3 7.4E-11 1.6E-15 53.2 8.5 63 21-88 1-63 (63)
96 cd05717 Ig1_Necl-1-3_like Firs 99.3 3E-10 6.5E-15 55.9 10.6 73 14-87 4-85 (95)
97 cd05845 Ig2_L1-CAM_like Second 99.3 3.2E-11 7E-16 59.0 6.7 71 15-89 11-84 (95)
98 KOG3513|consensus 99.3 5.9E-11 1.3E-15 77.5 9.7 80 17-100 436-515 (1051)
99 cd05871 Ig_Semaphorin_classIII 99.3 3.1E-10 6.7E-15 55.4 10.1 77 16-98 5-88 (91)
100 cd05860 Ig4_SCFR Fourth immuno 99.3 1.7E-09 3.7E-14 53.4 11.5 83 15-98 11-99 (101)
101 PF00047 ig: Immunoglobulin do 99.2 1.4E-10 3E-15 53.0 7.1 61 22-83 1-64 (64)
102 cd05872 Ig_Sema4B_like Immunog 99.2 3.5E-10 7.6E-15 54.4 8.7 65 15-85 4-68 (85)
103 cd05896 Ig1_IL1RAPL-1_like Fir 99.2 4.7E-10 1E-14 55.5 8.6 78 16-97 9-103 (104)
104 PF13895 Ig_2: Immunoglobulin 99.2 6.5E-10 1.4E-14 52.7 8.7 70 17-97 9-79 (80)
105 KOG4221|consensus 99.2 5.8E-10 1.2E-14 73.7 10.1 89 10-101 240-328 (1381)
106 PHA02826 IL-1 receptor-like pr 99.2 4.6E-10 9.9E-15 63.3 8.6 69 16-86 138-210 (227)
107 cd05881 Ig1_Necl-2 First (N-te 99.2 5.6E-09 1.2E-13 51.3 11.4 72 14-86 4-84 (95)
108 cd05862 Ig1_VEGFR First immuno 99.1 2.2E-09 4.8E-14 51.9 8.9 75 22-97 1-83 (86)
109 PHA02785 IL-beta-binding prote 99.1 7.9E-09 1.7E-13 61.3 12.0 75 14-89 227-317 (326)
110 cd04983 IgV_TCR_alpha_like Imm 99.1 6.6E-09 1.4E-13 52.3 10.0 75 12-87 3-93 (109)
111 cd05885 Ig2_Necl-4 Second immu 99.1 1.3E-09 2.8E-14 51.8 6.4 66 25-90 2-69 (80)
112 cd05897 Ig2_IL1R2_like Second 99.1 3.3E-09 7.1E-14 52.1 7.5 73 17-90 5-81 (95)
113 cd04980 IgV_L_kappa Immunoglob 99.0 1.2E-08 2.6E-13 51.2 8.8 75 11-86 4-93 (106)
114 cd05900 Ig_Aggrecan Immunoglob 99.0 2.6E-08 5.6E-13 50.4 9.6 76 21-97 1-107 (112)
115 PF13927 Ig_3: Immunoglobulin 99.0 3.3E-09 7.2E-14 49.5 5.1 73 8-85 2-75 (75)
116 cd05759 Ig2_KIRREL3-like Secon 98.9 5.5E-08 1.2E-12 46.5 9.2 64 25-88 2-70 (82)
117 cd00099 IgV Immunoglobulin var 98.9 2.5E-08 5.4E-13 49.8 8.1 70 18-88 2-91 (105)
118 PHA02826 IL-1 receptor-like pr 98.9 3E-08 6.6E-13 56.0 8.7 84 15-99 30-133 (227)
119 PHA02785 IL-beta-binding prote 98.9 3.9E-08 8.4E-13 58.4 9.1 76 17-98 36-116 (326)
120 cd05714 Ig_CSPGs_LP Immunoglob 98.9 2.1E-07 4.6E-12 46.6 10.5 76 21-97 1-101 (106)
121 cd05899 IgV_TCR_beta Immunoglo 98.9 7E-08 1.5E-12 48.7 8.8 73 12-86 3-94 (110)
122 cd05751 Ig1_LILRB1_like First 98.9 2.3E-08 5E-13 48.8 6.3 72 9-86 4-75 (91)
123 cd05877 Ig_LP_like Immunoglobu 98.8 2.2E-07 4.9E-12 46.5 9.7 76 21-97 1-101 (106)
124 cd04982 IgV_TCR_gamma Immunogl 98.8 1.6E-07 3.4E-12 47.8 9.1 74 12-85 3-98 (116)
125 KOG4221|consensus 98.8 5.9E-09 1.3E-13 69.2 4.1 93 5-101 326-418 (1381)
126 cd05713 Ig_MOG_like Immunoglob 98.8 3.5E-07 7.5E-12 45.3 9.6 75 22-97 1-98 (100)
127 cd05718 Ig1_PVR_like First imm 98.8 4.1E-07 8.9E-12 44.9 9.6 75 23-98 1-97 (98)
128 cd04984 IgV_L_lambda Immunoglo 98.8 1.2E-07 2.6E-12 46.9 7.6 68 18-86 2-85 (98)
129 cd05879 Ig_P0 Immunoglobulin ( 98.8 1.3E-06 2.9E-11 44.5 11.4 74 14-88 5-104 (116)
130 cd05878 Ig_Aggrecan_like Immun 98.8 5.3E-07 1.2E-11 45.6 9.9 76 21-97 1-105 (110)
131 KOG4222|consensus 98.8 3.6E-08 7.8E-13 65.3 6.5 80 10-92 134-215 (1281)
132 cd05774 Ig_CEACAM_D1 First imm 98.8 2.5E-07 5.4E-12 46.4 8.2 75 18-96 9-103 (105)
133 cd07706 IgV_TCR_delta Immunogl 98.7 5.9E-07 1.3E-11 45.7 8.4 74 12-85 4-93 (116)
134 cd05741 Ig_CEACAM_D1_like Firs 98.7 6.2E-07 1.3E-11 43.7 8.0 64 22-89 1-82 (92)
135 cd05755 Ig2_ICAM-1_like Second 98.7 6.6E-07 1.4E-11 44.4 7.8 71 17-88 11-86 (100)
136 cd05715 Ig_P0-like Immunoglobu 98.6 1.9E-06 4.1E-11 43.9 9.6 74 14-88 5-104 (116)
137 cd05880 Ig_EVA1 Immunoglobulin 98.6 9.9E-07 2.1E-11 44.9 8.4 74 14-88 5-103 (115)
138 cd05712 Ig_Siglec_N Immunoglob 98.6 2.6E-06 5.7E-11 43.6 9.8 73 13-86 5-102 (119)
139 PF07686 V-set: Immunoglobulin 98.6 5E-06 1.1E-10 41.7 11.3 74 12-86 6-101 (114)
140 KOG4222|consensus 98.6 8.9E-08 1.9E-12 63.5 5.1 91 6-100 224-314 (1281)
141 cd05761 Ig2_Necl-1-4_like Seco 98.6 1.2E-06 2.6E-11 41.9 7.8 65 25-89 2-70 (82)
142 cd05883 Ig2_Necl-2 Second immu 98.6 1.4E-06 3.1E-11 41.6 7.7 63 25-87 2-67 (82)
143 KOG4194|consensus 98.6 3.3E-07 7.2E-12 57.9 6.8 85 7-94 706-791 (873)
144 cd05711 Ig_FcalphaRI Immunoglo 98.6 6.1E-07 1.3E-11 44.1 6.4 66 17-84 10-75 (94)
145 cd05775 Ig_SLAM-CD84_like_N N- 98.6 1.3E-06 2.7E-11 43.2 7.6 77 21-97 3-95 (97)
146 cd07694 Ig2_CD4 Second immunog 98.6 3.6E-06 7.7E-11 40.5 8.3 73 18-97 10-84 (88)
147 cd00098 IgC Immunoglobulin Con 98.5 2E-06 4.4E-11 42.1 7.3 68 20-88 11-86 (95)
148 cd07705 Ig2_Necl-1 Second immu 98.5 6.4E-06 1.4E-10 39.5 8.5 64 25-88 2-70 (83)
149 cd05720 Ig_CD8_alpha Immunoglo 98.5 3E-06 6.5E-11 42.4 7.4 66 19-85 3-90 (104)
150 PHA02987 Ig domain OX-2-like p 98.5 8.9E-06 1.9E-10 44.4 9.4 82 15-97 23-120 (189)
151 cd05888 Ig1_Nectin-4_like Frst 98.5 6.9E-06 1.5E-10 40.8 8.5 36 62-97 62-98 (100)
152 cd05902 Ig_Neurocan Immunoglob 98.4 2E-05 4.3E-10 39.9 10.1 75 22-97 2-105 (110)
153 cd05901 Ig_Versican Immunoglob 98.4 2.1E-05 4.6E-10 40.1 10.9 36 62-97 77-112 (117)
154 cd05716 Ig_pIgR Immunoglobulin 98.4 7.4E-06 1.6E-10 40.4 8.1 71 17-87 2-87 (98)
155 cd00096 Ig Immunoglobulin doma 98.4 6.6E-06 1.4E-10 37.1 7.6 61 26-87 2-66 (74)
156 cd05884 Ig2_Necl-3 Second immu 98.4 1E-05 2.2E-10 38.9 8.1 63 25-87 2-69 (83)
157 PF08205 C2-set_2: CD80-like C 98.4 2.1E-05 4.6E-10 38.1 10.0 67 22-88 14-85 (89)
158 PHA03376 BARF1; Provisional 98.4 1.3E-05 2.9E-10 43.9 9.0 73 16-88 20-111 (221)
159 cd05886 Ig1_Nectin-1_like Firs 98.4 2.7E-05 5.8E-10 38.7 9.8 37 62-98 61-98 (99)
160 cd07700 IgV_CD8_beta Immunoglo 98.4 9.4E-06 2E-10 40.8 7.7 67 18-85 2-93 (107)
161 cd05846 Ig1_MRC-OX-2_like Firs 98.3 1.1E-05 2.4E-10 39.8 7.6 75 22-97 1-95 (97)
162 cd05887 Ig1_Nectin-3_like Firs 98.3 2.7E-05 5.9E-10 38.4 8.7 76 23-98 1-95 (96)
163 cd07698 IgC_MHC_I_alpha3 Class 98.3 2.5E-05 5.4E-10 38.3 8.1 65 22-87 14-83 (93)
164 cd05771 IgC_Tapasin_R Tapasin- 98.3 4E-05 8.6E-10 40.3 8.8 80 7-87 38-131 (139)
165 cd04981 IgV_H Immunoglobulin ( 98.2 5.1E-05 1.1E-09 38.8 8.5 71 14-85 4-97 (117)
166 smart00406 IGv Immunoglobulin 98.1 5.4E-05 1.2E-09 35.7 6.9 22 61-82 59-80 (81)
167 cd05889 Ig1_DNAM-1_like First 98.1 0.00015 3.3E-09 35.8 8.5 35 62-96 58-93 (96)
168 cd05766 IgC_MHC_II_beta Class 97.9 0.0004 8.7E-09 34.1 8.4 66 21-87 13-83 (94)
169 cd05772 IgC_SIRP Signal-regula 97.9 0.00057 1.2E-08 34.7 10.1 67 19-87 18-92 (111)
170 cd05771 IgC_Tapasin_R Tapasin- 97.8 6.6E-05 1.4E-09 39.4 4.8 37 65-101 2-38 (139)
171 cd07703 Ig2_Nectin-2_like Seco 97.8 0.00053 1.1E-08 33.8 7.0 73 22-95 15-90 (95)
172 cd05719 Ig2_PVR_like Second im 97.7 0.0012 2.7E-08 32.5 8.7 67 22-91 15-86 (95)
173 smart00407 IGc1 Immunoglobulin 97.7 0.00097 2.1E-08 31.3 7.6 61 25-86 2-70 (75)
174 cd05767 IgC_MHC_II_alpha Class 97.6 0.0014 3E-08 32.3 7.2 62 21-86 14-83 (94)
175 PHA02633 hypothetical protein; 97.6 0.00037 8E-09 31.3 4.5 35 65-99 19-53 (63)
176 PF07654 C1-set: Immunoglobuli 97.6 0.0017 3.6E-08 31.0 8.2 63 21-87 7-77 (83)
177 cd05770 IgC_beta2m Class I maj 97.6 0.0019 4.2E-08 31.7 9.4 64 21-86 14-82 (93)
178 cd07692 Ig_CD3_epsilon Immunog 97.4 0.0013 2.7E-08 30.0 5.0 53 19-86 4-56 (65)
179 cd07699 IgC_L Immunoglobulin C 97.4 0.0035 7.6E-08 31.2 7.0 66 21-87 16-89 (100)
180 cd05768 IgC_CH4 CH4 domain (fo 97.3 0.002 4.3E-08 32.2 5.7 65 21-86 15-90 (102)
181 KOG3515|consensus 97.3 0.00067 1.5E-08 44.6 4.4 78 6-88 6-83 (741)
182 cd05847 IgC_CH2_IgE CH2 domain 97.1 0.0094 2E-07 29.3 7.5 66 21-87 13-86 (94)
183 cd07689 Ig2_VCAM-1 Second immu 96.9 0.015 3.2E-07 28.9 6.3 67 19-86 12-85 (99)
184 cd05769 IgC_TCR_beta T cell re 96.7 0.028 6.2E-07 28.8 8.2 70 21-91 17-96 (115)
185 cd07697 IgC_TCR_gamma T cell r 96.6 0.028 6.1E-07 27.8 8.5 31 21-52 15-47 (96)
186 KOG1480|consensus 96.5 0.00064 1.4E-08 44.7 0.0 76 13-91 135-210 (909)
187 cd07696 IgC_CH3 CH3 domain (th 96.4 0.037 8E-07 27.4 8.9 68 19-87 11-86 (96)
188 PHA02982 hypothetical protein; 96.4 0.02 4.4E-07 32.3 5.3 72 17-88 34-124 (251)
189 cd05721 IgV_CTLA-4 Immunoglobu 96.3 0.051 1.1E-06 27.9 7.8 68 16-84 7-94 (115)
190 cd04985 IgC_CH1 CH1 domain (fi 96.2 0.051 1.1E-06 26.8 7.7 65 21-87 15-87 (95)
191 cd07704 Ig2_Nectin-3-4_like Se 96.1 0.06 1.3E-06 26.7 8.0 71 17-88 11-85 (97)
192 PF07354 Sp38: Zona-pellucida- 96.1 0.021 4.6E-07 33.3 4.5 49 35-86 10-59 (271)
193 PF08204 V-set_CD47: CD47 immu 95.8 0.1 2.2E-06 27.4 6.0 78 18-97 23-118 (130)
194 cd04986 IgC_CH2 CH2 domain (se 95.5 0.13 2.8E-06 25.7 6.2 64 21-86 18-88 (99)
195 PHA03042 CD47-like protein; Pr 94.5 0.53 1.2E-05 27.9 8.2 71 19-97 28-103 (286)
196 cd07691 Ig_CD3_gamma_delta Imm 94.4 0.22 4.9E-06 23.1 5.8 49 22-85 6-54 (69)
197 KOG4597|consensus 93.3 0.26 5.5E-06 31.5 4.3 79 17-97 206-290 (560)
198 PF06328 Lep_receptor_Ig: Ig-l 92.6 0.64 1.4E-05 22.7 7.3 65 16-83 12-81 (89)
199 KOG3515|consensus 92.3 0.9 1.9E-05 30.9 5.9 70 17-86 107-185 (741)
200 PHA02865 MHC-like TNF binding 89.1 3.8 8.2E-05 25.4 6.2 21 24-45 216-238 (338)
201 PHA03052 Hypothetical protein; 87.5 1.9 4.1E-05 20.0 4.7 35 15-49 5-41 (69)
202 PF11465 Receptor_2B4: Natural 84.7 3.8 8.2E-05 20.9 5.3 35 63-97 70-105 (108)
203 PHA03376 BARF1; Provisional 83.5 1.1 2.5E-05 25.4 1.9 25 22-47 139-163 (221)
204 PHA03282 envelope glycoprotein 74.4 15 0.00033 24.1 4.9 21 65-85 125-145 (540)
205 COG5475 Uncharacterized small 74.3 6.6 0.00014 17.4 2.7 20 76-95 28-47 (60)
206 PHA03271 envelope glycoprotein 70.1 17 0.00036 23.6 4.4 33 18-51 256-291 (490)
207 PHA02914 Immunoglobulin-like d 68.9 29 0.00062 22.5 10.2 36 64-99 81-117 (500)
208 PF06832 BiPBP_C: Penicillin-B 68.1 12 0.00027 18.0 7.5 25 24-50 31-55 (89)
209 PF05790 C2-set: Immunoglobuli 61.2 18 0.00038 17.4 7.9 19 66-84 45-63 (80)
210 PHA03240 envelope glycoprotein 55.0 42 0.0009 19.7 4.1 64 17-81 33-122 (258)
211 PHA03270 envelope glycoprotein 53.4 47 0.001 21.7 4.2 33 18-51 230-265 (466)
212 PF02480 Herpes_gE: Alphaherpe 53.3 21 0.00046 23.2 2.9 21 65-85 270-290 (439)
213 KOG0613|consensus 46.9 8.7 0.00019 28.1 0.6 53 26-80 209-261 (1205)
214 PHA03269 envelope glycoprotein 43.3 1E+02 0.0022 20.8 7.1 34 17-51 337-373 (566)
215 KOG0613|consensus 42.1 30 0.00064 25.7 2.5 75 16-91 343-420 (1205)
216 PHA03189 UL14 tegument protein 41.3 89 0.0019 19.6 6.7 19 70-88 139-157 (348)
217 KOG1026|consensus 40.5 21 0.00045 25.1 1.5 33 17-50 202-234 (774)
218 PF15096 G6B: G6B family 35.1 49 0.0011 18.9 2.2 14 72-85 82-95 (224)
219 PF01688 Herpes_gI: Alphaherpe 34.7 87 0.0019 17.5 4.5 22 65-86 125-146 (161)
220 PHA03283 envelope glycoprotein 34.3 1.5E+02 0.0033 20.2 5.2 37 64-100 134-170 (542)
221 PHA03273 envelope glycoprotein 33.6 1.5E+02 0.0032 19.9 7.4 32 18-50 246-280 (486)
222 PF03921 ICAM_N: Intercellular 33.1 69 0.0015 15.9 11.5 83 8-100 4-87 (91)
223 PHA03291 envelope glycoprotein 32.0 1.4E+02 0.0031 19.2 4.9 34 64-97 129-162 (401)
224 PF13220 DUF4028: Protein of u 28.9 64 0.0014 14.2 1.7 15 75-89 9-23 (65)
225 PHA03290 envelope glycoprotein 25.1 1.9E+02 0.0042 18.4 5.2 23 64-86 129-151 (357)
226 PF13696 zf-CCHC_2: Zinc knuck 24.9 41 0.00088 13.1 0.6 12 78-89 8-19 (32)
227 PHA03292 envelope glycoprotein 23.3 2.2E+02 0.0049 18.6 4.5 24 64-87 128-151 (413)
228 PF02440 Adeno_E3_CR1: Adenovi 21.4 1.1E+02 0.0023 14.1 4.4 20 20-44 3-22 (63)
229 cd05890 Ig2_Nectin-1_like Seco 21.0 1.4E+02 0.003 15.2 7.2 60 24-86 22-86 (98)
No 1
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.88 E-value=1.2e-20 Score=93.37 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=80.2
Q ss_pred ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205 8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
|.|...+..+.+..|+.+.|.|.+.| .|.|.+.|++++..+....++..........|.|..+...|.|.|.|.+.|..
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G-~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~ 79 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTG-TQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKL 79 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcc-cCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCC
Confidence 34566677788999999999999999 99999999999999987767766665556789999999999999999999999
Q ss_pred CcceEEEEEEEeCCC
Q psy17205 88 GKTRQYLELSGKYPN 102 (106)
Q Consensus 88 ~~~~~~~~l~~~~~~ 102 (106)
|...+.+.|.+...|
T Consensus 80 G~~~~~~~l~V~~~P 94 (98)
T cd05762 80 GSRQAQVNLTVVDKP 94 (98)
T ss_pred CceeEEEEEEEecCC
Confidence 999988877754443
No 2
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.84 E-value=8.7e-19 Score=85.92 Aligned_cols=89 Identities=26% Similarity=0.349 Sum_probs=76.0
Q ss_pred cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205 7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
+|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....++.+........|.|.++...|.|.|.|.+.|.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDG-EPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEee-cCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 456666777888999999999999999 9999999999998887666666655445668999999999999999999999
Q ss_pred CCcceEEEEE
Q psy17205 87 MGKTRQYLEL 96 (106)
Q Consensus 87 ~~~~~~~~~l 96 (106)
.|.....+.|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9998877765
No 3
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.82 E-value=5.8e-18 Score=82.63 Aligned_cols=89 Identities=28% Similarity=0.430 Sum_probs=79.3
Q ss_pred ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205 8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
|.|...+..+.+..|+++.|.|.+.+ .|.+.+.|++++..+....++..........|.|.++...|.|.|.|.+.|..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSG-NPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEE-SSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEe-CCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence 46667778899999999999999999 89999999999999988878877776778899999999999999999999998
Q ss_pred CcceEEEEEE
Q psy17205 88 GKTRQYLELS 97 (106)
Q Consensus 88 ~~~~~~~~l~ 97 (106)
|.....+.|.
T Consensus 80 g~~~~~~~l~ 89 (90)
T PF07679_consen 80 GEATASVNLT 89 (90)
T ss_dssp EEEEEEEEEE
T ss_pred CEEEEEEEEE
Confidence 8888877665
No 4
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.81 E-value=6.9e-18 Score=82.71 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=70.2
Q ss_pred CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205 14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92 (106)
Q Consensus 14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~ 92 (106)
+..+.+..|+.+.|.|...| .|.|.+.|++++..+....++.+... +....|.|.++...|.|.|.|.+.|..|....
T Consensus 8 p~~v~v~~G~~v~L~C~v~G-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFG-DPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CceEEEeCCCcEEEEEEEEe-cCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 44577889999999999999 99999999999998877666655433 33457999999999999999999999999888
Q ss_pred EEEEE
Q psy17205 93 YLELS 97 (106)
Q Consensus 93 ~~~l~ 97 (106)
.+.|.
T Consensus 87 ~~~v~ 91 (92)
T cd05737 87 DVTVS 91 (92)
T ss_pred EEEEe
Confidence 77764
No 5
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.81 E-value=2.1e-18 Score=83.85 Aligned_cols=86 Identities=23% Similarity=0.243 Sum_probs=70.0
Q ss_pred ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205 8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
|.+........+..|+.+.|.|.+.| .|.|.+.|++++..+....++... ...|.|.++...|.|.|.|.+.|..
T Consensus 2 p~i~~~~~~~~~~~G~~v~l~C~~~G-~P~P~v~W~k~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 2 ADINVKFKDTYALKGQNVTLECFALG-NPVPVIRWRKILEPMPATAEISMS----GAVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CceEEccccEEEeCCCcEEEEEEecc-cCCCEEEEEECCcCCCCCCEEecC----CCEEEECcCChhhCEEEEEEEEcCC
Confidence 55666677788889999999999999 999999999998776654333221 2369999999999999999999999
Q ss_pred CcceEEEEEEE
Q psy17205 88 GKTRQYLELSG 98 (106)
Q Consensus 88 ~~~~~~~~l~~ 98 (106)
|.......|.+
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd05851 77 GKDKHQARVYV 87 (88)
T ss_pred CceEEEEEEEE
Confidence 99887776653
No 6
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.81 E-value=1.5e-17 Score=80.51 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=69.3
Q ss_pred eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205 16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94 (106)
Q Consensus 16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 94 (106)
.+.+..|+.+.|.|.+.| .|.|.+.|++++..+... .++..........|.|..+...|.|.|.|.+.|..|.....+
T Consensus 4 ~~~v~~G~~v~l~c~~~G-~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPISG-EPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeEee-cCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 567889999999999999 999999999999888653 355555544566899999999999999999999999988877
Q ss_pred EEE
Q psy17205 95 ELS 97 (106)
Q Consensus 95 ~l~ 97 (106)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05894 83 FVK 85 (86)
T ss_pred EEE
Confidence 764
No 7
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.77 E-value=1.7e-17 Score=77.98 Aligned_cols=72 Identities=31% Similarity=0.339 Sum_probs=61.5
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
|+.+.|.|.+.+ .|.|.+.|++++..+....++.+...+ .|.|.++...|.|.|.|.+.|..|.......|.
T Consensus 1 G~~~~l~C~~~g-~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKA-APKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecce-eCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 678999999999 999999999999877766666554433 799999999999999999999999988877664
No 8
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.77 E-value=1.5e-17 Score=78.46 Aligned_cols=73 Identities=26% Similarity=0.455 Sum_probs=61.2
Q ss_pred cCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 21 RGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
+|+.+.|.|.+.| .|.|.+.|++++..+....+...... ..|.|.++...|.|.|.|.+.|..|.....+.|.
T Consensus 1 eG~~v~l~C~~~g-~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQG-YPQPVIAWTKGGSQLSVDRRHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCE-ecCCEEEEEECCEECCCCCCeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 4789999999999 99999999999988876544433332 2799999999999999999999999988776664
No 9
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.77 E-value=1.8e-16 Score=77.39 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=67.3
Q ss_pred cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205 13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92 (106)
Q Consensus 13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~ 92 (106)
.+....+..|+.+.|.|.+.| .|.|.+.|++++..+................|.|.++...|.|.|.|.+.|..|....
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G-~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~ 84 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEG-SPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV 84 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEE-cCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence 344566889999999999999 9999999999998776543332333333557999999999999999999999999887
Q ss_pred EEEEE
Q psy17205 93 YLELS 97 (106)
Q Consensus 93 ~~~l~ 97 (106)
.+.|.
T Consensus 85 ~~~L~ 89 (90)
T cd04972 85 SVQVT 89 (90)
T ss_pred EEEEe
Confidence 76664
No 10
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.76 E-value=2.5e-16 Score=76.53 Aligned_cols=81 Identities=27% Similarity=0.311 Sum_probs=65.2
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEE----cCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMET----RGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~----~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 96 (106)
|+.+.|.|.+.+ .|.+.+.|++++..+... .++.+.. ......|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus 1 g~~~~l~C~~~g-~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHG-EKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEEC-CCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 678999999999 999999999999877643 3443332 1223579999999999999999999999999998888
Q ss_pred EEeCCCC
Q psy17205 97 SGKYPNA 103 (106)
Q Consensus 97 ~~~~~~~ 103 (106)
.+..+|.
T Consensus 80 ~V~~~P~ 86 (88)
T cd05735 80 TVQEPPD 86 (88)
T ss_pred EEeCCCC
Confidence 8666543
No 11
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.76 E-value=5.6e-17 Score=78.40 Aligned_cols=81 Identities=27% Similarity=0.278 Sum_probs=67.5
Q ss_pred ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205 12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91 (106)
Q Consensus 12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~ 91 (106)
..+....+..|+.+.|.|.+.| .|.|.+.|++++..+....++.... ..|.+.++...|.|.|.|.+.|..|...
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g-~p~p~v~W~k~g~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASG-NPRPAYRWLKNGQPLASENRIEVEA----GDLRITKLSLSDSGMYQCVAENKHGTIY 78 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeE-eCCCEEEEEECCEECCCCCeEEEeC----CEEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence 3455677889999999999999 9999999999999887655554332 2699999999999999999999999888
Q ss_pred EEEEEE
Q psy17205 92 QYLELS 97 (106)
Q Consensus 92 ~~~~l~ 97 (106)
+.+.|.
T Consensus 79 ~~~~l~ 84 (85)
T cd05728 79 ASAELA 84 (85)
T ss_pred EEEEEE
Confidence 776664
No 12
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.76 E-value=1.4e-16 Score=75.16 Aligned_cols=72 Identities=24% Similarity=0.307 Sum_probs=61.9
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
+.|.|.+.| .|.|.+.|++++..+....+...........|.|.++...|.|.|.|.+.|..|.....+.|.
T Consensus 2 ~~l~c~~~G-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 2 VRLEVPISG-RPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred EEEEeeEee-eCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 678999999 999999999999988666666665555567899999999999999999999999988877664
No 13
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.75 E-value=2.8e-16 Score=76.97 Aligned_cols=84 Identities=23% Similarity=0.334 Sum_probs=69.5
Q ss_pred cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205 13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91 (106)
Q Consensus 13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~ 91 (106)
.+..+.+..|+.+.|.|...+ .|.|.+.|++++..+....++..... .....|.|..+...|.|.|.|.+.|.+|...
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g-~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFG-NPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEE-eCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence 355678889999999999999 99999999999988876655544332 2234799999999999999999999999999
Q ss_pred EEEEEE
Q psy17205 92 QYLELS 97 (106)
Q Consensus 92 ~~~~l~ 97 (106)
..+.|.
T Consensus 86 ~~~~v~ 91 (92)
T cd05891 86 VDVTVS 91 (92)
T ss_pred eEEEEE
Confidence 887765
No 14
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.75 E-value=3.8e-16 Score=77.22 Aligned_cols=89 Identities=22% Similarity=0.350 Sum_probs=66.7
Q ss_pred ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC-----CEEEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205 8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE-----RRIMETRGRRHTLVIRKVLFTDFGNYSCV 82 (106)
Q Consensus 8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~-----~~~~~~~~~~~~l~~~~~~~~~~g~y~C~ 82 (106)
|.+...+.......|+.+.|.|.+.| .|.|.+.|++++..+.... ++..........|.|.++...|.|.|.|.
T Consensus 3 p~i~~~~~~~~~~~g~~v~l~C~~~G-~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 3 PKITYVENQTAMELEEQITLTCEASG-DPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred ceEEEccCceEEEcCCCEEEEEEeeE-eCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 45554444455556899999999999 9999999999886654321 22222223345799999999999999999
Q ss_pred EEcCCCcceEEEEEE
Q psy17205 83 AENSMGKTRQYLELS 97 (106)
Q Consensus 83 ~~~~~~~~~~~~~l~ 97 (106)
+.|..|.....+.|.
T Consensus 82 A~N~~G~~~~~~~l~ 96 (97)
T cd05869 82 ASNTIGQDSQSMYLE 96 (97)
T ss_pred EecCCCCeeEEEEEE
Confidence 999999988877664
No 15
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.74 E-value=3e-16 Score=76.32 Aligned_cols=84 Identities=24% Similarity=0.268 Sum_probs=66.4
Q ss_pred eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205 9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~ 88 (106)
.+...+....+..|+.+.|.|.+.+ .|.|.+.|++++..+....... . ....|.|.++...|.|.|.|.+.|..|
T Consensus 3 ~~~~~p~~~~~~~g~~v~l~C~~~g-~P~p~v~W~k~~~~~~~~~~~~-~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G 77 (88)
T cd04968 3 IIVVFPKDTYALKGQNVTLECFALG-NPVPQIKWRKVDGSMPSSAEIS-M---SGAVLKIPNIQFEDEGTYECEAENIKG 77 (88)
T ss_pred cEEECCCceEEeCCCcEEEEEEeeE-eCCCEEEEEECCCcCCCccEEE-E---eCCEEEECCCCcccCEEEEEEEEECCC
Confidence 3445566677889999999999999 9999999999876554432222 1 123799999999999999999999999
Q ss_pred cceEEEEEE
Q psy17205 89 KTRQYLELS 97 (106)
Q Consensus 89 ~~~~~~~l~ 97 (106)
.......|.
T Consensus 78 ~~~~~~~l~ 86 (88)
T cd04968 78 KDTHQGRIY 86 (88)
T ss_pred cEEEEEEEE
Confidence 887766665
No 16
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.73 E-value=4.5e-16 Score=76.68 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=65.9
Q ss_pred eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205 16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94 (106)
Q Consensus 16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 94 (106)
.+.+..|+.+.|.|.+.| .|.|.+.|++++..+... .++... .....|.|.++...|.|.|.|.+.|..|.....+
T Consensus 12 ~~~~~~G~~v~L~C~~~g-~P~p~v~W~k~g~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 12 NATANLGQSVTLACDADG-FPEPTMTWTKDGEPIESGEEKYSFN--EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred ceEEeCCCCEEEEEeccE-eCCCEEEEEECCEECcCCCCEEEEe--CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence 456789999999999999 999999999999888664 233222 2234699999999999999999999999988877
Q ss_pred EEEEe
Q psy17205 95 ELSGK 99 (106)
Q Consensus 95 ~l~~~ 99 (106)
.|.+.
T Consensus 89 ~L~V~ 93 (95)
T cd05730 89 HLKVF 93 (95)
T ss_pred EEEEE
Confidence 77643
No 17
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.73 E-value=2.7e-16 Score=74.16 Aligned_cols=72 Identities=24% Similarity=0.279 Sum_probs=58.6
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCC-CCCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDT-TERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~-~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
+.|.|.+.| .|.|.+.|++++..+.. ..++.+... ....+|.|.++...|.|.|.|.+.|..|.......|.
T Consensus 1 v~l~C~v~G-~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISA-IPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CEEEEEEEe-cCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 468999999 99999999999988874 345555432 2334799999999999999999999999888776654
No 18
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.73 E-value=2.7e-16 Score=73.98 Aligned_cols=72 Identities=31% Similarity=0.367 Sum_probs=61.1
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
|+.+.|.|.+.+ .|.|.+.|++++..+....+......+ .|.|.++...|.|.|.|.+.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g-~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKA-APKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeE-cCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 678999999999 999999999999888766565543333 699999999999999999999999988877664
No 19
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.72 E-value=6.6e-16 Score=76.74 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=66.3
Q ss_pred eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc------CcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205 16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR------GRRHTLVIRKVLFTDFGNYSCVAENSMGK 89 (106)
Q Consensus 16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 89 (106)
...+..|+.+.|.|...| .|.|.+.|++++..+....+...... .....|.|.++...|.|.|.|.+.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g-~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEA-YPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEE-eCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 566778999999999999 99999999999999876543322111 11347999999999999999999999998
Q ss_pred ceEEEEEEE
Q psy17205 90 TRQYLELSG 98 (106)
Q Consensus 90 ~~~~~~l~~ 98 (106)
....+.|.+
T Consensus 91 ~~~t~~l~V 99 (101)
T cd05859 91 KSYTFALQI 99 (101)
T ss_pred EEEEEEEEE
Confidence 887777664
No 20
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.72 E-value=4.3e-16 Score=74.17 Aligned_cols=71 Identities=24% Similarity=0.283 Sum_probs=59.9
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~ 93 (106)
|+.+.|.|.+.+ .|.|.+.|++++..+....++..........|.|.++...|.|.|.|.+.|..|...+.
T Consensus 1 G~~v~l~C~~~g-~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 1 GETVEFTCVATG-VPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred CCEEEEEEEEEE-ecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 678999999999 99999999999888776656655554455689999999999999999999998876653
No 21
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.72 E-value=6e-16 Score=72.42 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=57.6
Q ss_pred eEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 24 RHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 24 ~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
++.|.|.+.| .|.|.+.|++++..+....++.....+ .+.+..+...|.|.|.|.+.|..|...+...|.
T Consensus 1 ~v~l~C~~~G-~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTG-KPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEE-eCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 3689999999 999999999999887766555544433 477789999999999999999999988776664
No 22
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.72 E-value=1.7e-15 Score=75.20 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=66.2
Q ss_pred CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-----CcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205 15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-----GRRHTLVIRKVLFTDFGNYSCVAENSMGK 89 (106)
Q Consensus 15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 89 (106)
..+.+..|+.+.|.|.+.+-.|.|.+.|++++..+........... .....|.|..+...|.|.|.|.+.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4577889999999999987236789999999998875433322211 12457999999999999999999999998
Q ss_pred ceEEEEEEE
Q psy17205 90 TRQYLELSG 98 (106)
Q Consensus 90 ~~~~~~l~~ 98 (106)
....+.|.+
T Consensus 91 ~~~t~~L~V 99 (101)
T cd04975 91 KSLTFELYV 99 (101)
T ss_pred EEEEEEEEE
Confidence 888777764
No 23
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.71 E-value=1.8e-15 Score=74.95 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=66.0
Q ss_pred ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CEEcCC-----CCCEEEEEcCcEEEEEEcccCCCCCEeeE
Q psy17205 8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TLKLDT-----TERRIMETRGRRHTLVIRKVLFTDFGNYS 80 (106)
Q Consensus 8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~~l~~-----~~~~~~~~~~~~~~l~~~~~~~~~~g~y~ 80 (106)
|.+.. ..++.+..|+.+.|.|.+.| .|.|.+.|++. +..+.. ..++..........|.|.++...|.|.|.
T Consensus 3 p~i~~-~~~~~~~~G~~v~l~C~~~G-~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 3 PHIIQ-LKNETTVENGAATLSCKAEG-EPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CEEEe-eccEEEcCCCcEEEEEeccc-CCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 44543 45677889999999999999 99999999984 333321 12344433333457999999999999999
Q ss_pred EEEEcCCCcceEEEEEE
Q psy17205 81 CVAENSMGKTRQYLELS 97 (106)
Q Consensus 81 C~~~~~~~~~~~~~~l~ 97 (106)
|.+.|..|.....+.|.
T Consensus 81 C~A~N~~G~~~~~~~l~ 97 (98)
T cd05870 81 CEAASRIGGHQKSMYLD 97 (98)
T ss_pred EEEeccCCcceeEEEEe
Confidence 99999999887766553
No 24
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.71 E-value=2.5e-16 Score=73.31 Aligned_cols=68 Identities=25% Similarity=0.401 Sum_probs=56.9
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 96 (106)
+.|.|.+.| .|.|.+.|++++..+....++.....+ .|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus 1 v~L~C~~~g-~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQG-DPEPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceE-eCCCEEEEEECCEECCCCCCEEECCCC---EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 468999999 999999999999888765555443332 79999999999999999999999998877665
No 25
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.71 E-value=1.7e-15 Score=73.22 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=63.7
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEE-EEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRI-METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 95 (106)
+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....+.. .........|.|..+...|.|.|.|.+.|..|.....+.
T Consensus 4 ~~v~~G~~~~L~C~~~g-~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAG-NPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCC-CCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 45678999999999999 9999999999998887653321 111122446899999999999999999999999888776
Q ss_pred EE
Q psy17205 96 LS 97 (106)
Q Consensus 96 l~ 97 (106)
|.
T Consensus 83 l~ 84 (85)
T cd05857 83 LD 84 (85)
T ss_pred EE
Confidence 64
No 26
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.71 E-value=2e-15 Score=74.47 Aligned_cols=88 Identities=23% Similarity=0.322 Sum_probs=66.9
Q ss_pred ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC-----CEEEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205 8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE-----RRIMETRGRRHTLVIRKVLFTDFGNYSCV 82 (106)
Q Consensus 8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~-----~~~~~~~~~~~~l~~~~~~~~~~g~y~C~ 82 (106)
|.+. ...+..+..|+.+.|.|.+.+ .|.|.+.|++++..+.... ++..........|.|.++...|.|.|.|.
T Consensus 3 P~i~-~~~~~~~~~g~~v~l~C~~~g-~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 3 PKIT-YLENQTAVELEQITLTCEAEG-DPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred ccce-ecCceeEecCCcEEEEEEEeE-cCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 3443 234567789999999999999 9999999999886554321 22222223345799999999999999999
Q ss_pred EEcCCCcceEEEEEE
Q psy17205 83 AENSMGKTRQYLELS 97 (106)
Q Consensus 83 ~~~~~~~~~~~~~l~ 97 (106)
+.|..|.....+.|.
T Consensus 81 a~N~~G~~~~s~~l~ 95 (96)
T cd05732 81 ASNRIGGDQQSMYLE 95 (96)
T ss_pred EEeCCCCcEEEEEEe
Confidence 999999988776654
No 27
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.71 E-value=2.8e-15 Score=73.25 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=65.9
Q ss_pred ccCCeEEeecCCeEEEEEEEeecCCCCeEEEee-CCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205 12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90 (106)
Q Consensus 12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 90 (106)
..+..+.+..|+.+.|.|.+.| .|. .+.|++ ++..+....++.....+....|.|..+..+|.|.|.|.+.|..|..
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G-~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIG-EPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEE-eCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 3445577889999999999999 887 899997 4666665566666555556689999999999999999999998886
Q ss_pred e-EEEEE
Q psy17205 91 R-QYLEL 96 (106)
Q Consensus 91 ~-~~~~l 96 (106)
. +.+.|
T Consensus 83 ~~~~i~l 89 (92)
T cd05866 83 QEATVVL 89 (92)
T ss_pred EEEEEEE
Confidence 4 34444
No 28
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.71 E-value=1.3e-15 Score=72.19 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=58.5
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC---CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE---RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~---~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~ 98 (106)
|+.+.|.|.+.| .|.|.+.|++++..+.... +... . ...|.|.+++..|.|.|.|.+.|..|.......|.+
T Consensus 1 G~~v~l~C~~~G-~P~p~i~W~k~g~~i~~~~~~~~~~~-~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEG-IPTPNITWSINGAPIEGTDPDPRRHV-S---SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeE-eCCCeEEEEECCEECCCCCCCceEEe-e---CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 678999999999 9999999999998876532 2222 1 236999999999999999999999998887766653
No 29
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.70 E-value=2.7e-15 Score=73.94 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=63.6
Q ss_pred cCCeEEeecCCeEEEEEEEeecCCC-CeEEEee-CCEEcCC-CCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEEcCC-
Q psy17205 13 TERRIIETRGRRHTLIFFFHFAFCR-PQVIWYK-ETLKLDT-TERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAENSM- 87 (106)
Q Consensus 13 ~~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~~-~~~~l~~-~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~- 87 (106)
.+....+..|+.+.|.|.+.| .|. |.+.|++ ++..+.. ..++.... ......|.|..+...|.|.|.|.+.|..
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G-~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAG-EAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred eCCccEECCCCeEEEEEEEeC-CCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 444556788999999999999 884 7999997 6765554 33443322 2224579999999999999999999997
Q ss_pred CcceEEEEEE
Q psy17205 88 GKTRQYLELS 97 (106)
Q Consensus 88 ~~~~~~~~l~ 97 (106)
|...+.+.|.
T Consensus 85 g~~~~s~~l~ 94 (96)
T cd05865 85 GESEATVNVK 94 (96)
T ss_pred CcEEEEEEEE
Confidence 7777766654
No 30
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.70 E-value=7e-16 Score=71.13 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=53.3
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
+.|.|.+.| .|.|.+.|++++..+... .....|.|.++...|.|.|.|.+.|..|.....+.+.
T Consensus 1 ~~l~c~v~g-~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~ 64 (67)
T cd05863 1 VKLPVKVAA-YPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLE 64 (67)
T ss_pred CEEEEEEEE-eCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEE
Confidence 368999999 999999999999888632 1234799999999999999999999999777666554
No 31
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.69 E-value=2.6e-15 Score=70.92 Aligned_cols=72 Identities=24% Similarity=0.229 Sum_probs=58.1
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
+.|.|.+.| .|.|.+.|++++..+... .++.+... .....|.|.++...|.|.|.|.+.|..|.......|.
T Consensus 1 v~L~C~v~G-~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSA-IPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred CEEEEEEee-cCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 368999999 999999999999888743 45544433 2344699999999999999999999999888776653
No 32
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.69 E-value=1.3e-15 Score=72.10 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=59.4
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~ 98 (106)
|+.+.|.|.+.+ .|.|.+.|++++..+........ .......|.|..+...|.|.|.|.+.|..|...+.+.|.+
T Consensus 1 G~~~~l~C~~~g-~P~p~i~W~~~g~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEG-IPQPTITWRLNGVPIEELPPDPR-RRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEcee-eCCCEEEEEECCEECCCCCCcce-EEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 678999999999 99999999999988765432211 1122347999999999999999999999998887776653
No 33
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.69 E-value=2.2e-15 Score=71.10 Aligned_cols=72 Identities=25% Similarity=0.259 Sum_probs=58.0
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcC-cEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRG-RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~-~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
+.|.|.+.| .|.|.+.|++++..+... .++.+.... ....|.|..+...|.|.|.|.+.|..|.......|.
T Consensus 1 v~l~C~v~G-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSG-VPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CEEEEEEeE-ecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 468999999 999999999999888653 455554332 234699999999999999999999999988766654
No 34
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.69 E-value=2.3e-15 Score=71.82 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=62.3
Q ss_pred CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205 15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94 (106)
Q Consensus 15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 94 (106)
..+.+..|+.+.|.|.+.+ . .+.+.|++++..+....++.+.. ..|.|..+...|+|.|.|.+.|..|.....+
T Consensus 2 ~~~~~~~G~~v~l~C~~~~-~-~~~v~W~k~g~~l~~~~~~~~~~----~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRD-D-VQSINWTKDGVQLGENNRTRITG----EEVQIKDAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CcEEecCCCCEEEEEEecC-C-CceEEEeeCCcCCCCCceEEEeC----CEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence 3456779999999999988 5 57899999998887665554432 2699999999999999999999888877666
Q ss_pred EEE
Q psy17205 95 ELS 97 (106)
Q Consensus 95 ~l~ 97 (106)
.|.
T Consensus 76 ~v~ 78 (79)
T cd04973 76 SVN 78 (79)
T ss_pred EEe
Confidence 554
No 35
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.68 E-value=7.3e-15 Score=72.80 Aligned_cols=89 Identities=26% Similarity=0.335 Sum_probs=62.8
Q ss_pred cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-----CCEEEEEcCcEEEEEEc--ccCCCCCEee
Q psy17205 7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-----ERRIMETRGRRHTLVIR--KVLFTDFGNY 79 (106)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-----~~~~~~~~~~~~~l~~~--~~~~~~~g~y 79 (106)
+|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+... .+......+....+.+. .+...|.|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEG-RPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCc-CCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 356667777888899999999999999 999999999999887652 11112222222222222 2357899999
Q ss_pred EEEEEcCCCc-ceEEEEE
Q psy17205 80 SCVAENSMGK-TRQYLEL 96 (106)
Q Consensus 80 ~C~~~~~~~~-~~~~~~l 96 (106)
.|.+.|..|. ......|
T Consensus 80 ~C~a~N~~G~~~s~~~~l 97 (100)
T cd07693 80 VCVAHNSLGEAVSRNASL 97 (100)
T ss_pred EEEEEccccceecceEEE
Confidence 9999999988 3334444
No 36
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.68 E-value=8.4e-15 Score=70.74 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=60.2
Q ss_pred CeEEEEEEEeecCCCC--eEEEeeCCEEcCCCC---CEE-EEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205 23 RRHTLIFFFHFAFCRP--QVIWYKETLKLDTTE---RRI-METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96 (106)
Q Consensus 23 ~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~---~~~-~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 96 (106)
+++.|.|.+.+ .|.| .+.|++++..+.... ++. .........|.|.+++..|.|.|.|.+.|..|...+...|
T Consensus 1 ~~~~L~C~a~g-~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASH-DPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEEec-CCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence 46899999999 8887 579999998875421 221 2221234579999999999999999999999999988888
Q ss_pred EEeCC
Q psy17205 97 SGKYP 101 (106)
Q Consensus 97 ~~~~~ 101 (106)
.+..+
T Consensus 80 ~V~~~ 84 (85)
T cd05854 80 VVRGP 84 (85)
T ss_pred EEECC
Confidence 76644
No 37
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.68 E-value=1.4e-14 Score=71.73 Aligned_cols=88 Identities=24% Similarity=0.342 Sum_probs=67.6
Q ss_pred cceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCC--CCEEEEEc----CcEEEEEEcccCCCC-CEe
Q psy17205 7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTT--ERRIMETR----GRRHTLVIRKVLFTD-FGN 78 (106)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~--~~~~~~~~----~~~~~l~~~~~~~~~-~g~ 78 (106)
+|.+.. .....+..|+.+.|.|.+.| .|.| .+.|++++..+... .++.+... .....|.|..+...| .|.
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g-~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFS-TPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcc-cCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccccee
Confidence 455543 44566789999999999999 9999 69999999887653 34544332 223479999999855 899
Q ss_pred eEEEEEcCCCcceEEEEE
Q psy17205 79 YSCVAENSMGKTRQYLEL 96 (106)
Q Consensus 79 y~C~~~~~~~~~~~~~~l 96 (106)
|.|.+.|..|.....+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999998877655
No 38
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.68 E-value=4.2e-15 Score=71.12 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=55.9
Q ss_pred EEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE-------cCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 27 LIFFFHFAFCRPQVIWYKETLKLDTTERRIMET-------RGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 27 ~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
+.|.+.| .|.|.+.|++++..+....+..... ......|.|.++...|.|.|.|.+.|..|...+.+.+.
T Consensus 3 i~~~v~G-~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRG-NPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEe-eCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 6789999 9999999999999887654432211 12244699999999999999999999999988877654
No 39
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.68 E-value=3.2e-15 Score=70.79 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=58.0
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCC-EEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~-~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~ 98 (106)
|+.+.|.|.+.| .|.|.+.|++++..+..... ...... ...+.+..+...|.|.|.|.+.|..|...+...|.+
T Consensus 1 g~~~~l~C~a~G-~P~P~i~W~k~g~~i~~~~~~~~~~~~--~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANG-NPKPSISWLTNGVPIEIAPTDPSRKVD--GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeE-eCCCeEEEEECCEEccccCCCceEEec--CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 678899999999 99999999999988754321 111111 126888999999999999999999999888766653
No 40
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.67 E-value=2e-15 Score=70.59 Aligned_cols=68 Identities=26% Similarity=0.416 Sum_probs=55.7
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
+.|.|.+.| .|.|.+.|++++..+....+... ....|.|.++...|+|.|.|.+.|..|.....+.+.
T Consensus 1 ~~l~c~v~g-~P~p~v~W~k~g~~l~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~ 68 (71)
T cd04976 1 VRLPVKVKA-YPPPEIQWYKNGKLISEKNRTKK----SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT 68 (71)
T ss_pred CEEEeEEEE-eCCCEEEEEECCEECCCCCEEEc----CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence 368899999 99999999999998876543321 134799999999999999999999998877766655
No 41
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.67 E-value=3.6e-15 Score=69.32 Aligned_cols=68 Identities=24% Similarity=0.335 Sum_probs=53.5
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 96 (106)
|+.+.|.|.+.| .|.|.+.|++++..+....+... ....|.|.++. |.|.|.|.+.|..|.......|
T Consensus 1 G~~v~L~C~a~G-~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVG-APMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeee-cCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 678999999999 99999999999988765433221 12357888764 7899999999999987776654
No 42
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.67 E-value=1.9e-15 Score=70.71 Aligned_cols=70 Identities=27% Similarity=0.329 Sum_probs=55.1
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~ 98 (106)
+.|.|.+.| .|.|.+.|++++..+.... .... .....|.|.++...|.|.|.|.+.|..|.....+.|.+
T Consensus 1 ~~L~C~~~G-~P~P~v~W~k~~~~~~~~~-~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEG-LPTPEVHWDRIDGPLSPNR-TKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeE-ecCCeEEEEECCcCCCCCc-eeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 368999999 9999999999987665432 2111 12347999999999999999999999999888777653
No 43
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.67 E-value=4.9e-15 Score=69.82 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=57.2
Q ss_pred CCeEEEEEEEeecCCCCeEEEee-CCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
|+.+.|.|.+.+ .|.|.+.|++ ++..+....+......+ .|.|..+...|.|.|.|.+.|..|.....+.|.
T Consensus 1 G~~~~l~C~~~g-~P~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARG-DPEPAIHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCeEEEEEEccC-cCCCEEEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 678999999999 9999999997 56666554444333322 688999999999999999999999887776664
No 44
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.66 E-value=3.7e-14 Score=71.45 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=62.3
Q ss_pred cCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEc----CcEEEEEEcccC-CCCCEeeEEEEEcCCCcceEEE
Q psy17205 21 RGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETR----GRRHTLVIRKVL-FTDFGNYSCVAENSMGKTRQYL 94 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~----~~~~~l~~~~~~-~~~~g~y~C~~~~~~~~~~~~~ 94 (106)
.|..+.|.|.+.| .|.+.+.|++++..+... .++..... .....|.|.++. ..|.|.|.|.+.|..|.....+
T Consensus 22 ~g~~v~L~C~a~G-~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQG-VPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI 100 (109)
T ss_pred CCCEEEEEEECcc-cCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence 5688999999999 999999999999888643 34332211 113468999987 5899999999999999998888
Q ss_pred EEEEeCC
Q psy17205 95 ELSGKYP 101 (106)
Q Consensus 95 ~l~~~~~ 101 (106)
.|.+..+
T Consensus 101 ~L~~~~~ 107 (109)
T cd05773 101 QLVSTSR 107 (109)
T ss_pred EEEecCC
Confidence 8875544
No 45
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.66 E-value=7.5e-15 Score=69.52 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=58.0
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEEe
Q psy17205 26 TLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGK 99 (106)
Q Consensus 26 ~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~ 99 (106)
.|.|.+.| .|.|.+.|++++..+....+...........|.|.++...|.|.|.|.+.|..|.....+.|.+.
T Consensus 2 ~L~C~v~g-~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEG-IPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EeEeEeee-cCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 68899999 99999999999988765433222222223469999999999999999999999998888777754
No 46
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.66 E-value=1.3e-14 Score=70.85 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=62.9
Q ss_pred cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205 13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92 (106)
Q Consensus 13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~ 92 (106)
.+.++.+..|+.+.|.|.+.+ . .|.+.|++++..+... +..+.. ....|.|.++...|.|.|.|.+.|..|...+
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g-~-~p~i~W~kng~~l~~~-~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEG-Q-ATYIWWVNNGSLLVPP-RLQLSN--DNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred ccCccccccCCcEEEEEEeCC-C-CCEEEEEECCEECCCC-CEEEeC--CCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 344678889999999999999 8 9999999999877654 332222 2337999999999999999999999987654
Q ss_pred -EEEEE
Q psy17205 93 -YLELS 97 (106)
Q Consensus 93 -~~~l~ 97 (106)
.+.|.
T Consensus 84 ~~~~L~ 89 (91)
T cd05740 84 DPYILN 89 (91)
T ss_pred eeEEEE
Confidence 44444
No 47
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.66 E-value=8.9e-15 Score=69.44 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=55.4
Q ss_pred EEEEEeecCCCCeEEEeeCCEEcCCCCCEEEE-----EcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 27 LIFFFHFAFCRPQVIWYKETLKLDTTERRIME-----TRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 27 ~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~-----~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
+.|.+.| .|.|.+.|++++..|....+.... .......|.|..+...|.|.|.|.+.|..|.....+.+.
T Consensus 3 i~~~v~G-~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKG-NPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeE-eCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 5788899 999999999999999766543211 112244799999999999999999999999988776553
No 48
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.65 E-value=7.2e-15 Score=70.44 Aligned_cols=78 Identities=24% Similarity=0.378 Sum_probs=61.7
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 96 (106)
+....|+.+.|.|.+.+ .|.|.+.|++++..+....... .......|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus 4 ~~~~~G~~v~L~C~~~g-~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 4 IARPVGSSVRLKCVASG-NPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eeccCCCeEEEEEEeeE-eCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 45667999999999999 9999999999987765432221 11224579999999999999999999999987777665
Q ss_pred E
Q psy17205 97 S 97 (106)
Q Consensus 97 ~ 97 (106)
.
T Consensus 81 ~ 81 (82)
T cd05856 81 D 81 (82)
T ss_pred e
Confidence 3
No 49
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.65 E-value=8.5e-15 Score=71.47 Aligned_cols=75 Identities=24% Similarity=0.226 Sum_probs=57.7
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcC--------CCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLD--------TTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~--------~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~ 93 (106)
|+.+.|.|.+.+ .|.|.+.|++++..+. ...++..... ..|.|.++...|.|.|.|.+.|..|.....
T Consensus 1 G~~v~L~C~~~g-~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 1 GRTVTFQCEATG-NPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILTK 76 (90)
T ss_pred CCEEEEEEECCc-cCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence 678999999999 9999999999875321 1223333222 269999999999999999999999998877
Q ss_pred EEEEEeC
Q psy17205 94 LELSGKY 100 (106)
Q Consensus 94 ~~l~~~~ 100 (106)
+.|.+..
T Consensus 77 ~~l~V~~ 83 (90)
T cd05726 77 AYLEVTD 83 (90)
T ss_pred EEEEEee
Confidence 7666443
No 50
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.65 E-value=4.2e-15 Score=69.19 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=53.2
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 26 TLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 26 ~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
.|.|.+.| .|.|.+.|++++..+....++ .. ...|.|..+...|.|.|.|.+.|..|.......+.
T Consensus 2 ~~~c~v~G-~P~P~v~W~k~g~~l~~~~~~--~~---~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~ 67 (70)
T cd05864 2 KIPVKYYG-YPPPEVKWYKNGQLIVLNHTF--KR---GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ 67 (70)
T ss_pred EEEeEEEE-eCCCEEEEEECCEECCCCCEE--cc---CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence 68899999 999999999999988764322 11 23699999999999999999999999776654443
No 51
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.65 E-value=1.8e-14 Score=69.57 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=59.0
Q ss_pred CeEEEEEEEeecCCCC--eEEEeeCCEEcCCCC---CEE-EEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205 23 RRHTLIFFFHFAFCRP--QVIWYKETLKLDTTE---RRI-METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96 (106)
Q Consensus 23 ~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~---~~~-~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 96 (106)
+.+.|.|.+.+ .|.| .+.|++++..+.... ++. .........|.|.+++..|.|.|.|.+.|..|...+...|
T Consensus 1 e~~~L~C~~~g-~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASH-DPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL 79 (85)
T ss_pred CcEEEEEEEec-CCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence 36789999999 8887 668999998876432 111 1111223479999999999999999999999988888777
Q ss_pred EEeCC
Q psy17205 97 SGKYP 101 (106)
Q Consensus 97 ~~~~~ 101 (106)
.+..|
T Consensus 80 ~V~~p 84 (85)
T cd04970 80 IVRGP 84 (85)
T ss_pred EEECC
Confidence 76654
No 52
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.64 E-value=3.4e-14 Score=69.69 Aligned_cols=80 Identities=25% Similarity=0.322 Sum_probs=58.0
Q ss_pred ceeeccCCeEEeec---CCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccC-CCCCEeeEEE
Q psy17205 8 LKLDTTERRIIETR---GRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVL-FTDFGNYSCV 82 (106)
Q Consensus 8 ~~~~~~~~~~~~~~---g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~-~~~~g~y~C~ 82 (106)
|.|...+..+.+.. +..+.|.|.+.| .|.|.+.|++++..+... .++... . ..|.|..+. ..|.|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G-~P~P~i~W~k~~~~i~~~~~~~~~~-~---g~L~I~~~~~~~D~G~Y~C~ 76 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARA-NPFPIYKWRKNNLDIDLTNDRYSMV-G---GNLVINNPDKYKDAGRYVCI 76 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCcc-CCCCEEEEEECCEEccCCCCeEEEE-C---CEEEECcCCcCCCCEEEEEE
Confidence 34444444444333 347999999999 999999999999887543 333322 2 268888875 5899999999
Q ss_pred EEcCCCcceE
Q psy17205 83 AENSMGKTRQ 92 (106)
Q Consensus 83 ~~~~~~~~~~ 92 (106)
+.|..|...+
T Consensus 77 A~N~~G~~~s 86 (93)
T cd05849 77 VSNIYGKVRS 86 (93)
T ss_pred EEeCcceEEE
Confidence 9999987654
No 53
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.64 E-value=2.5e-14 Score=70.30 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=58.6
Q ss_pred eeeccCCeEEee---cCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccC-CCCCEeeEEEEE
Q psy17205 9 KLDTTERRIIET---RGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVL-FTDFGNYSCVAE 84 (106)
Q Consensus 9 ~~~~~~~~~~~~---~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~-~~~~g~y~C~~~ 84 (106)
.|...+..+.+. .|+.+.|.|.+.| .|.|.+.|++++..+........... ...|.|..+. ..|.|.|.|.+.
T Consensus 3 ~f~~~p~~~~~~~~~~g~~v~l~C~~~G-~P~P~i~W~k~g~~l~~~~~~~~~~~--~g~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 3 VFVQEPDDAIFPTDSDEKKVILNCEARG-NPVPTYRWLRNGTEIDTESDYRYSLI--DGNLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred eeEECCCcEEccCCCCCCEEEEEEEeee-cCCCEEEEEECCeECccCCCceEEee--CCeEEEccCCccCcCEEEEEEEE
Confidence 444444444433 4689999999999 99999999999988865433222211 1267888774 589999999999
Q ss_pred cCCCcceE
Q psy17205 85 NSMGKTRQ 92 (106)
Q Consensus 85 ~~~~~~~~ 92 (106)
|..|...+
T Consensus 80 N~~G~~~S 87 (94)
T cd05848 80 NSIGSILS 87 (94)
T ss_pred cCCCeEEe
Confidence 99987653
No 54
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.63 E-value=8.6e-15 Score=68.42 Aligned_cols=70 Identities=29% Similarity=0.377 Sum_probs=54.8
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~ 98 (106)
+.|.|.+.| .|.|.+.|++++..+... +.... .....|.|.++...|.|.|.|.+.|..|.....+.|.+
T Consensus 1 v~l~C~~~g-~P~p~v~W~k~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEG-LPTPEISWIKIGGELPAD-RTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeE-ecCCeEEEEECCeECCCC-ceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 468999999 999999999998776543 22111 12337999999999999999999999998887776653
No 55
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.63 E-value=4.4e-14 Score=68.33 Aligned_cols=75 Identities=25% Similarity=0.305 Sum_probs=60.0
Q ss_pred CCeEEeecCCeEEEEEEE-eecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205 14 ERRIIETRGRRHTLIFFF-HFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91 (106)
Q Consensus 14 ~~~~~~~~g~~~~~~c~~-~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~ 91 (106)
+..+.+..|+++.|.|.+ .+ .|.|.+.|++++..+... .+..... ...|.|.++...|.|.|.|.+.|..|...
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g-~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRG-HPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CccEEEeCCCCEEEEEECCCC-CCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 445677899999999998 67 899999999999887763 3333322 23799999999999999999999988754
Q ss_pred E
Q psy17205 92 Q 92 (106)
Q Consensus 92 ~ 92 (106)
.
T Consensus 79 s 79 (86)
T cd05724 79 S 79 (86)
T ss_pred e
Confidence 3
No 56
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.63 E-value=1.6e-14 Score=67.20 Aligned_cols=68 Identities=31% Similarity=0.354 Sum_probs=54.4
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
+.|.|.+.| .|.|.+.|++++..+... +...... ..|.|.++...|.|.|.|.+.|..|.......|.
T Consensus 1 v~l~C~~~g-~P~p~v~W~k~~~~~~~~-~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGG-DPVPTVLWRKEDGELPKG-RAEILDD---KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred CEEEEECcc-CCCCEEEEEECCccCCCC-cEEEeeC---CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 368999999 999999999997666443 3333332 2699999999999999999999999888766654
No 57
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.61 E-value=1.6e-14 Score=68.23 Aligned_cols=70 Identities=24% Similarity=0.284 Sum_probs=52.8
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEc-CCC--CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205 26 TLIFFFHFAFCRPQVIWYKETLKL-DTT--ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98 (106)
Q Consensus 26 ~~~c~~~~~~p~p~~~w~~~~~~l-~~~--~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~ 98 (106)
.|.|.+.| .|.|.+.|++++... ... .++..... ...|.|.++...|.|.|.|.+.|..|.......|.+
T Consensus 2 ~l~C~~~G-~P~P~v~W~k~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 2 RLECAATG-HPTPQIAWQKDGGTDFPAARERRMHVMPE--DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred EeEeeccc-ccCCEEEEEeCCCccCCcccccceEEecC--CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 68999999 999999999987532 221 22222221 236899999999999999999999998877766653
No 58
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.61 E-value=2e-13 Score=67.15 Aligned_cols=79 Identities=20% Similarity=0.264 Sum_probs=58.3
Q ss_pred eeeccCCeEEeecC---CeEEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEcCcEEEEEEcccC-CCCCEeeEEE
Q psy17205 9 KLDTTERRIIETRG---RRHTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVL-FTDFGNYSCV 82 (106)
Q Consensus 9 ~~~~~~~~~~~~~g---~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~-~~~~g~y~C~ 82 (106)
.+...+..+.+..| +.+.|.|.+.| .|.|.+.|++++..+.... ++... .+ .|.|.++. ..|.|.|.|.
T Consensus 3 ~f~~~P~~~~~~~~~~g~~v~l~C~a~g-~P~p~i~W~~~g~~l~~~~~~~~~~~-~g---~L~I~~~~~~~D~G~Y~C~ 77 (94)
T cd05850 3 VFEEQPSSLLFPEGSPEEKVTLGCRARA-SPPATYRWKMNGTEIKFAPESRYTLV-AG---NLVINNPQKARDAGSYQCL 77 (94)
T ss_pred eeEECCCCEEecCCCCCCeEEEEeEcee-CCCCEEEEEECCEECccCCCceEEEE-CC---eEEEccCCccCcCEEEEEE
Confidence 44455555555444 57999999999 9999999999998886432 33222 22 57887755 5899999999
Q ss_pred EEcCCCcceE
Q psy17205 83 AENSMGKTRQ 92 (106)
Q Consensus 83 ~~~~~~~~~~ 92 (106)
+.|..|...+
T Consensus 78 A~N~~G~~~s 87 (94)
T cd05850 78 AINRCGTVVS 87 (94)
T ss_pred EEcCcCcEEE
Confidence 9999987654
No 59
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.61 E-value=4.7e-14 Score=66.94 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=53.9
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCC-CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE--EEEEE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTE-RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ--YLELS 97 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~--~~~l~ 97 (106)
+.|.|.+.| .|.|.+.|++++..+.... ++.... ....|.|..+...|.|.|.|.+.|..|.... .+.|.
T Consensus 1 v~L~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDG-HPRPTYQWFRDGTPLSDGQGNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeee-cCCCcEEEEECCEECCCCCccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 468999999 9999999999998876543 222222 1337999999999999999999999987643 45544
No 60
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.60 E-value=4.6e-14 Score=66.51 Aligned_cols=63 Identities=30% Similarity=0.415 Sum_probs=50.4
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCC--CCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDT--TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~ 91 (106)
+.|.|.+.| .|.|.+.|++++..+.. ..++..... ..|.|.++...|.|.|.|.+.|..|...
T Consensus 1 a~l~C~~~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~---g~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 65 (74)
T cd05738 1 ATMLCAASG-NPDPEITWFKDFLPVDTTSNGRIKQLRS---GALQIENSEESDQGKYECVATNSAGTRY 65 (74)
T ss_pred CEEEEEEeE-ecCCEEEEEECCEECccCCCCCEEEcCC---cEEEECCCChhhCEEEEEEEECCCCceE
Confidence 368999999 99999999999988763 334433222 2589999999999999999999988753
No 61
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.60 E-value=3.7e-14 Score=66.91 Aligned_cols=71 Identities=21% Similarity=0.388 Sum_probs=54.5
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEE---EEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRI---METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~---~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 95 (106)
+.|.|.+.++.|.|.+.|++++..+....+.. .........|.|..+...|.|.|.|.+.|..|.....+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 36889998746889999999998887543322 222234567999999999999999999999988766543
No 62
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.60 E-value=7.9e-14 Score=67.06 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=59.9
Q ss_pred CeEEEEEEEee-cCCCCeEEEeeCCEEcCCC---CCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 23 RRHTLIFFFHF-AFCRPQVIWYKETLKLDTT---ERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 23 ~~~~~~c~~~~-~~p~p~~~w~~~~~~l~~~---~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
+++.|.|.+.+ +.+.+.+.|++++..+... .++..... .....|.|.+++..|.|+|.|.+.|..+...+...|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 36789999976 2347789999999988632 23322111 1233799999999999999999999999988888887
Q ss_pred EeCCC
Q psy17205 98 GKYPN 102 (106)
Q Consensus 98 ~~~~~ 102 (106)
+..||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 66553
No 63
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.59 E-value=3.7e-13 Score=66.34 Aligned_cols=88 Identities=26% Similarity=0.400 Sum_probs=67.9
Q ss_pred cceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCC--CCEEEEEc----CcEEEEEEcccCCCC-CEe
Q psy17205 7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTT--ERRIMETR----GRRHTLVIRKVLFTD-FGN 78 (106)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~--~~~~~~~~----~~~~~l~~~~~~~~~-~g~ 78 (106)
+|.+ .....+.+..|+.+.|.|.+.+ .|.| .+.|..++..+... .++.+... +..+.|.|.++...| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s-~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGS-TPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEcc-CCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence 4555 5566778889999999999988 7776 56888777666543 45555442 467789999998877 689
Q ss_pred eEEEEEcCCCcceEEEEE
Q psy17205 79 YSCVAENSMGKTRQYLEL 96 (106)
Q Consensus 79 y~C~~~~~~~~~~~~~~l 96 (106)
|.|.+.|.+|.....+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999998877665
No 64
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.59 E-value=3.5e-13 Score=66.00 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=60.9
Q ss_pred ccCCeEEeecCCeEEEEEEEeecCCCCeEEEee-CCEEcCCCCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205 12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYK-ETLKLDTTERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89 (106)
Q Consensus 12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~-~~~~l~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 89 (106)
..+....+..|+.+.|.|.+.| .| +.+.|++ ++..+....+..... ......|+|.++...|.|.|.|.+.|..|.
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G-~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIG-EP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEe-eC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 3455577889999999999999 76 5999997 555554433433322 234568999999999999999999998654
Q ss_pred -ceEEEEE
Q psy17205 90 -TRQYLEL 96 (106)
Q Consensus 90 -~~~~~~l 96 (106)
..+.+.|
T Consensus 83 ~~~~sv~l 90 (92)
T cd04977 83 ESEATVNL 90 (92)
T ss_pred cceeEEEE
Confidence 3445544
No 65
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.59 E-value=1e-13 Score=67.62 Aligned_cols=75 Identities=24% Similarity=0.381 Sum_probs=54.7
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeC----CEEcCCCCC--EEEEEc-------CcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKE----TLKLDTTER--RIMETR-------GRRHTLVIRKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~----~~~l~~~~~--~~~~~~-------~~~~~l~~~~~~~~~~g~y~C~~~~~~~ 88 (106)
|+.+.|.|.+.+ .|.|.+.|++. +..+..... ...... .....|.|.++...|.|.|.|.+.|..|
T Consensus 1 G~~v~L~C~~~g-~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYS-DAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEec-CCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 678999999999 99999999984 333332211 111111 1124799999999999999999999999
Q ss_pred cceEEEEEE
Q psy17205 89 KTRQYLELS 97 (106)
Q Consensus 89 ~~~~~~~l~ 97 (106)
.......|.
T Consensus 80 ~~~~~a~L~ 88 (90)
T cd05858 80 ISHHSAWLT 88 (90)
T ss_pred cccceEEEE
Confidence 877766554
No 66
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.58 E-value=1.9e-13 Score=67.32 Aligned_cols=75 Identities=28% Similarity=0.374 Sum_probs=56.1
Q ss_pred cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCC--EEEEEcCcEEEEEEccc-----CCCCCEeeEEEEEc
Q psy17205 13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER--RIMETRGRRHTLVIRKV-----LFTDFGNYSCVAEN 85 (106)
Q Consensus 13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~--~~~~~~~~~~~l~~~~~-----~~~~~g~y~C~~~~ 85 (106)
.+....+..|+++.|.|.+.+ .|.|.+.|++++..+....+ ......+ .+.+..+ ...|.|.|.|.+.|
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g-~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEG-EPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred CCCCeEEcCCCCEEEeeeccc-CCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 344566778999999999999 99999999999988875432 2222222 3444444 57899999999999
Q ss_pred C-CCcce
Q psy17205 86 S-MGKTR 91 (106)
Q Consensus 86 ~-~~~~~ 91 (106)
. .|...
T Consensus 81 ~~~G~~~ 87 (95)
T cd05722 81 DSLGSIV 87 (95)
T ss_pred CccCcEE
Confidence 9 88764
No 67
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.57 E-value=8.6e-14 Score=66.52 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=56.1
Q ss_pred ccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205 12 TTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90 (106)
Q Consensus 12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 90 (106)
..+..+.+..|+.+.|.|.+.| .|.| .+.|++++..+..... .....|.+..+. |.|.|.|.+.|..|..
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G-~P~P~~I~W~k~g~~l~~~~~------~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVG-PPEPVEILWWQGGSPLGDPPA------PSPSVLNVPGLN--ETSKFSCEAHNAKGVT 73 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeee-ecCCeEEEEEECCEECCCCCC------CCCCEEEEcccc--CCeEEEEEEEeccCcE
Confidence 3456678889999999999999 9999 7999999988764111 112367777764 7799999999999876
Q ss_pred eE
Q psy17205 91 RQ 92 (106)
Q Consensus 91 ~~ 92 (106)
.+
T Consensus 74 ~s 75 (81)
T cd05749 74 TS 75 (81)
T ss_pred Ee
Confidence 54
No 68
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.57 E-value=4.9e-14 Score=69.21 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=59.5
Q ss_pred eEEeecCCeEEEEEEEeecC-----CCCeEEEeeCCEEcCCC--CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205 16 RIIETRGRRHTLIFFFHFAF-----CRPQVIWYKETLKLDTT--ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 16 ~~~~~~g~~~~~~c~~~~~~-----p~p~~~w~~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~ 88 (106)
...+..|+.+.|.|...+ . |.+.+.|++++..+... .+...... ...|.|..+...|+|.|.|.+.|..|
T Consensus 8 ~~~v~~G~~~~L~C~~~g-~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFY-SYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred EEEEecCCCeEEECCCCC-cccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCc
Confidence 456778999999999887 4 67899999998654321 11112111 23699999999999999999999999
Q ss_pred cceEEEEEE
Q psy17205 89 KTRQYLELS 97 (106)
Q Consensus 89 ~~~~~~~l~ 97 (106)
+....+.|.
T Consensus 85 ~~~~~~~L~ 93 (94)
T cd05756 85 CMKVSISLT 93 (94)
T ss_pred cEEEEEEEE
Confidence 888776654
No 69
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.57 E-value=9.1e-14 Score=66.49 Aligned_cols=74 Identities=24% Similarity=0.268 Sum_probs=54.3
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCE---E-cCCCCCE--EEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETL---K-LDTTERR--IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~---~-l~~~~~~--~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 95 (106)
|+.+.|.|.+.+ .|.|.+.|++++. . +...... .... .....|.|.++...|.|.|.|.+.|..|.....+.
T Consensus 1 G~~v~l~C~~~g-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVTG-RPPPEITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred CCcEEEEeeccc-cCCCcEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence 678999999999 9999999998731 1 1111110 0111 11247999999999999999999999999888777
Q ss_pred EE
Q psy17205 96 LS 97 (106)
Q Consensus 96 l~ 97 (106)
|+
T Consensus 79 l~ 80 (81)
T cd05765 79 LS 80 (81)
T ss_pred Ee
Confidence 65
No 70
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.56 E-value=1.4e-13 Score=67.19 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=54.7
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCC----EEcCCC--CCEEEEE-------cCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKET----LKLDTT--ERRIMET-------RGRRHTLVIRKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~----~~l~~~--~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~ 88 (106)
|+.+.|.|.+.+ .|.|.+.|++++ ..+... ....... ......|.|.++...|.|.|.|.+.|..|
T Consensus 1 G~~v~l~C~v~g-~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYS-DAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeC-CCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 578999999999 999999999863 222211 1111111 01234689999999999999999999999
Q ss_pred cceEEEEEEE
Q psy17205 89 KTRQYLELSG 98 (106)
Q Consensus 89 ~~~~~~~l~~ 98 (106)
...+...|.+
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 8877666653
No 71
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.56 E-value=1.9e-13 Score=63.89 Aligned_cols=67 Identities=25% Similarity=0.298 Sum_probs=51.5
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 26 TLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 26 ~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
.|.|...| .|.|.+.|++++..+... .++.. . ...|.|.++...|+|.|.|.+.+........+.++
T Consensus 2 ~l~c~v~g-~P~P~v~W~kdg~~l~~~~~~~~~--~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 2 RLTPKVKA-FPAPEVIWLKDGLPAAEKCSRYHV--D--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred eEEeeEEE-cCCCeEEEEECCEECCCCCcEEEe--C--CCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 58899999 999999999999887654 22222 1 22699999999999999999999755555444443
No 72
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.55 E-value=1.5e-13 Score=65.17 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=47.1
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEcCcEEEEEEcccCC----CCCEeeEEEEEcCCCcceE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVLF----TDFGNYSCVAENSMGKTRQ 92 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~~----~~~g~y~C~~~~~~~~~~~ 92 (106)
+.|.|.+.| .|.|.+.|++++..+.... +..... ....|.+..+.. .|.|.|.|.+.|..|...+
T Consensus 1 ~~l~C~a~G-~P~P~i~W~k~g~~l~~~~~~~~~~~~--~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKG-KPPPSFSWTRNGTHFDIDKDPKVTMKP--NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcc-cCCCeEEEEECCeECCCcCCCCEEEeC--CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 468999999 9999999999998774332 232222 123566666553 3789999999999987665
No 73
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.55 E-value=6.9e-14 Score=66.37 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=48.2
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCC----CCCEeeEEEEEcCCCcceE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLF----TDFGNYSCVAENSMGKTRQ 92 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~----~~~g~y~C~~~~~~~~~~~ 92 (106)
+.|.|.+.| .|.|.+.|++++..+.......+........|.+..+.. .|.|.|.|.+.|..|...+
T Consensus 1 i~l~C~~~G-~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKG-NPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcc-cCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 468999999 999999999999887643222222212233677777643 6899999999999987554
No 74
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.54 E-value=3.9e-13 Score=63.60 Aligned_cols=70 Identities=16% Similarity=0.310 Sum_probs=52.5
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCC----CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTE----RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 94 (106)
+.|.|.+.++.|.+.+.|++++..+.... ++..........|.|.++...|.|.|.|.+.|..|.....+
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 36889987525778999999998775421 22333333456799999999999999999999998876654
No 75
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.54 E-value=1.6e-12 Score=62.55 Aligned_cols=80 Identities=23% Similarity=0.357 Sum_probs=62.3
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEE-EEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIM-ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 95 (106)
+.+..|+.+.|.|.+.+ .|.+.+.|++++..+........ ........|.|.++...|.|.|.|.+.|..|.....+.
T Consensus 4 ~~~~~G~~~~l~C~~~~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASG-NPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCC-CCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 45667999999999999 89999999999987765433322 11233457899999999999999999999888777666
Q ss_pred EE
Q psy17205 96 LS 97 (106)
Q Consensus 96 l~ 97 (106)
|.
T Consensus 83 l~ 84 (85)
T cd05729 83 VD 84 (85)
T ss_pred Ee
Confidence 53
No 76
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.52 E-value=4.2e-13 Score=63.66 Aligned_cols=65 Identities=23% Similarity=0.210 Sum_probs=47.4
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCC--CCCEEEEEcCcEEEEEEcccCC----CCCEeeEEEEEcCCCcceE
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDT--TERRIMETRGRRHTLVIRKVLF----TDFGNYSCVAENSMGKTRQ 92 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~----~~~g~y~C~~~~~~~~~~~ 92 (106)
+.|.|.+.| .|.|.+.|++++..+.. ..++.+.. ....|.+..+.. .|.|.|.|.+.|..|...+
T Consensus 1 ~~l~C~~~G-~P~P~v~W~k~g~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKG-NPVPTFQWTRNGKFFNVAKDPRVSMRR--RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccc-cCCCEEEEEECCEEccCcCCCcEEEeC--CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 368999999 99999999999987643 23343322 123677776542 3689999999999987665
No 77
>KOG3513|consensus
Probab=99.52 E-value=5.2e-13 Score=86.60 Aligned_cols=93 Identities=26% Similarity=0.248 Sum_probs=79.4
Q ss_pred ecccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCC---EEEEEcCcEEEEEEcccCCCCCEeeE
Q psy17205 4 YKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER---RIMETRGRRHTLVIRKVLFTDFGNYS 80 (106)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~~~~~~g~y~ 80 (106)
+..+|......+...+..|+++.|.|.+.| .|.|.+.|++++..+....+ ..+..+ .|.|.++...|.|.|.
T Consensus 328 v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g-~P~p~v~WlkNg~pl~~~~r~~~~~i~~g----~L~is~v~~~dsg~YQ 402 (1051)
T KOG3513|consen 328 VYAPPYWLQKPQDTEADTGSNVTLECKASG-KPNPTVKWLKNGEPLEPAERDPRYKIDDG----TLIISNVQESDSGVYQ 402 (1051)
T ss_pred EecCchhhcccceeEecCCCCeEEEEEecC-CCCCceEEeeCCeecCccCCCcceEEeCC----EEEEEecccccCeEEE
Confidence 445677777888889999999999999999 99999999999999987655 544443 7999999999999999
Q ss_pred EEEEcCCCcceEEEEEEEeCC
Q psy17205 81 CVAENSMGKTRQYLELSGKYP 101 (106)
Q Consensus 81 C~~~~~~~~~~~~~~l~~~~~ 101 (106)
|.+.|..|...+...|.++..
T Consensus 403 C~A~Nk~G~i~anA~L~V~a~ 423 (1051)
T KOG3513|consen 403 CIAENKYGTIYANAELKVLAS 423 (1051)
T ss_pred eeeecccceEeeeeEEEEEcc
Confidence 999999999888777775555
No 78
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.51 E-value=7.4e-13 Score=63.81 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=55.0
Q ss_pred CCeEEEEEEEeecC--CCCeEEEeeCCEEcCCCCC-----EEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205 22 GRRHTLIFFFHFAF--CRPQVIWYKETLKLDTTER-----RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94 (106)
Q Consensus 22 g~~~~~~c~~~~~~--p~p~~~w~~~~~~l~~~~~-----~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 94 (106)
|+.+.|.|.+.+ . |.+.+.|...+..+..... ...........|.|.+++..|.|.|.|.+.|..+......
T Consensus 1 Ge~~~L~C~~~g-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLT-ELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEe-CCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 678999999999 8 7889999877654432211 0011112345799999999999999999999988877766
Q ss_pred EEE
Q psy17205 95 ELS 97 (106)
Q Consensus 95 ~l~ 97 (106)
.|.
T Consensus 80 ~v~ 82 (84)
T cd05742 80 KVN 82 (84)
T ss_pred EEE
Confidence 554
No 79
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.51 E-value=1.4e-12 Score=63.75 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=56.0
Q ss_pred eeeccCCeEEee---cCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC--CCEEEEEcCcEEEEEEcccCC-CCCEeeEEE
Q psy17205 9 KLDTTERRIIET---RGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT--ERRIMETRGRRHTLVIRKVLF-TDFGNYSCV 82 (106)
Q Consensus 9 ~~~~~~~~~~~~---~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~~-~~~g~y~C~ 82 (106)
.|...+..+.+. .++.+.|.|.+.+ .|.|.+.|++++..+... .++.... ..|.|.++.. .|.|.|.|.
T Consensus 3 ~f~~~p~~~~~~~~~~~~~~~l~C~~~g-~p~p~i~W~k~~~~l~~~~~~~~~~~~----~~L~i~~~~~~~d~G~Y~C~ 77 (91)
T cd04967 3 VFEEQPDDTIFPEESDEGKVSLNCRARG-SPPPTYRWLMNGTEIDDEPDSRYSLVG----GNLVISNPSKAKDAGRYQCL 77 (91)
T ss_pred eeEeCCCCEEccCCCCCCEEEEEEeeeE-cCCCEEEEEECCEECCCCCCCCEEEEC----CEEEEecCCccCCCEEEEEE
Confidence 444444444432 3467999999999 999999999999887432 2332221 2678887764 899999999
Q ss_pred EEcCCCcceE
Q psy17205 83 AENSMGKTRQ 92 (106)
Q Consensus 83 ~~~~~~~~~~ 92 (106)
+.|..|....
T Consensus 78 a~N~~G~~~S 87 (91)
T cd04967 78 ASNIVGTVLS 87 (91)
T ss_pred EEcCCCEEEe
Confidence 9999886543
No 80
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.51 E-value=1.6e-12 Score=62.68 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=53.8
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC----CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC--cceEEEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE----RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG--KTRQYLE 95 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~--~~~~~~~ 95 (106)
|+++.|.|.+.+ .|.+.+.|+..+....... ............|.|.+++..|+|.|.|.+.|..+ ...+.+.
T Consensus 1 Ge~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQG-NEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEEC-CCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 688999999999 8999999987664322111 11111112245799999999999999999998765 4555666
Q ss_pred EEE
Q psy17205 96 LSG 98 (106)
Q Consensus 96 l~~ 98 (106)
|++
T Consensus 80 i~V 82 (84)
T cd05861 80 ITV 82 (84)
T ss_pred EEE
Confidence 654
No 81
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.49 E-value=3.7e-12 Score=61.51 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=54.3
Q ss_pred CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205 14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
+....+..|+++.|.|...+ +.+.+.|++++..+... .++.+.. + .|.|.++...|.|.|.|.+.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~--~~~~i~W~~ng~~i~~~~~r~~~~~-~---~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS--NLARVVWKFDGKVLTPESAKYLLYR-D---GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEECCC--CCCeEEEEECCEECCCCCceEEEEC-C---cEEEeCCCHHHCEEEEEEEEec
Confidence 45677889999999999754 67899999999988765 3443332 2 5999999999999999999875
No 82
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.48 E-value=1.3e-12 Score=62.11 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=52.2
Q ss_pred eeeccCCeEEeecCCeEEEEEEEeecCCC-CeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205 9 KLDTTERRIIETRGRRHTLIFFFHFAFCR-PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
.+...+....+..|+.++|.|.+.+ .|. +.+.|++++..+... ...|.+.++ ..|+|.|.|.+.+.
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~-~p~~~~~~W~kng~~l~~~----------~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFN-SPEQNSTQWYHNGKLLETT----------TNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCC-CCCCccEEEEECCEEeecc----------CCeEEEeec-ccCCEEeEEECCCC
Confidence 3455566678889999999999988 775 469999999876321 125788888 89999999999875
No 83
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.47 E-value=5.6e-12 Score=62.01 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=53.8
Q ss_pred CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEc-C-------CCCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205 15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKL-D-------TTERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAEN 85 (106)
Q Consensus 15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l-~-------~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~ 85 (106)
.++.+..|+++.|.|.+.+ .|.|.+.|++.+..+ . ...++.... ......|.|.++..+|.|.|.|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g-~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKE-HDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeC-CCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 4577889999999999999 999999998876422 1 112333222 22356899999999999999999987
Q ss_pred C
Q psy17205 86 S 86 (106)
Q Consensus 86 ~ 86 (106)
.
T Consensus 84 ~ 84 (95)
T cd05882 84 M 84 (95)
T ss_pred e
Confidence 3
No 84
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.47 E-value=2.1e-12 Score=61.51 Aligned_cols=63 Identities=24% Similarity=0.345 Sum_probs=46.9
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcC--------CCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLD--------TTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~--------~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~ 91 (106)
+.|.|.+.| .|.|.+.|++.+.... ...++..... ..|.|..+...|.|.|.|.+.|..|...
T Consensus 1 v~l~C~~~G-~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 71 (79)
T cd05734 1 VTLNCSAEG-YPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADA 71 (79)
T ss_pred CEeEeeCeE-eCCCEEEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCC
Confidence 468999999 9999999998643211 1123332222 3699999999999999999999988764
No 85
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.46 E-value=2.9e-12 Score=61.86 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=59.8
Q ss_pred cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205 13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92 (106)
Q Consensus 13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~ 92 (106)
.+..+.+..|++++|.|.+.++.|.+.+.|++++..+... .. .....|.|..+...|.|.|.|.+.|..|...+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~----~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AM----DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--cc----ccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 4556778899999999998742578899999987654332 11 11237999999999999999999999988777
Q ss_pred EEEE
Q psy17205 93 YLEL 96 (106)
Q Consensus 93 ~~~l 96 (106)
...|
T Consensus 81 ~~~l 84 (85)
T cd05754 81 TATL 84 (85)
T ss_pred EEEE
Confidence 6554
No 86
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.43 E-value=1.9e-11 Score=60.17 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=54.0
Q ss_pred CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCE--------EcCCCCCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEE
Q psy17205 14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETL--------KLDTTERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAE 84 (106)
Q Consensus 14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~--------~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~ 84 (106)
.+++.+.+|+++.|.|...+ .|.+.+.|++.+. ......++..... .....|.|.++..+|.|.|.|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~-~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQ-NDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEec-CCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence 45678889999999999999 8999999986321 1122235444222 245679999999999999999998
Q ss_pred cC
Q psy17205 85 NS 86 (106)
Q Consensus 85 ~~ 86 (106)
+.
T Consensus 83 t~ 84 (95)
T cd07701 83 TM 84 (95)
T ss_pred ee
Confidence 74
No 87
>smart00409 IG Immunoglobulin.
Probab=99.43 E-value=6.6e-11 Score=56.46 Aligned_cols=81 Identities=30% Similarity=0.391 Sum_probs=63.7
Q ss_pred eEEeecCCeEEEEEEEeecCCCCeEEEeeC-CEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205 16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKE-TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94 (106)
Q Consensus 16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 94 (106)
.+.+..|+.+.|.|.+.+ .+.+.+.|+++ +..+....++..........|.+.++...|.|.|.|.+.+..+.....+
T Consensus 3 ~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 3 SVTVKEGESVTLSCEVSG-SPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEcc-CCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 356678999999999999 77889999998 7777645555555544456899999999999999999998776666555
Q ss_pred EEE
Q psy17205 95 ELS 97 (106)
Q Consensus 95 ~l~ 97 (106)
.|.
T Consensus 82 ~l~ 84 (86)
T smart00409 82 TLT 84 (86)
T ss_pred EEE
Confidence 443
No 88
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.43 E-value=6.6e-11 Score=56.46 Aligned_cols=81 Identities=30% Similarity=0.391 Sum_probs=63.7
Q ss_pred eEEeecCCeEEEEEEEeecCCCCeEEEeeC-CEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205 16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKE-TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94 (106)
Q Consensus 16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 94 (106)
.+.+..|+.+.|.|.+.+ .+.+.+.|+++ +..+....++..........|.+.++...|.|.|.|.+.+..+.....+
T Consensus 3 ~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 3 SVTVKEGESVTLSCEVSG-SPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEcc-CCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 356678999999999999 77889999998 7777645555555544456899999999999999999998776666555
Q ss_pred EEE
Q psy17205 95 ELS 97 (106)
Q Consensus 95 ~l~ 97 (106)
.|.
T Consensus 82 ~l~ 84 (86)
T smart00410 82 TLT 84 (86)
T ss_pred EEE
Confidence 443
No 89
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.42 E-value=8.7e-12 Score=60.99 Aligned_cols=74 Identities=23% Similarity=0.340 Sum_probs=56.5
Q ss_pred EEeecCCeEEEEEEEeecC----CCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205 17 IIETRGRRHTLIFFFHFAF----CRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~----p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~ 92 (106)
+.+..|+...|.|+..+.. |.|.+.|++++..+....+... . ...|.|..+..+|+|.|.|.+.+..+....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-~---~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-K---GSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-c---CCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 5567899999999875412 5789999999998876543322 2 237999999999999999999998766554
Q ss_pred EE
Q psy17205 93 YL 94 (106)
Q Consensus 93 ~~ 94 (106)
.+
T Consensus 81 ~~ 82 (92)
T cd05757 81 NV 82 (92)
T ss_pred EE
Confidence 33
No 90
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.42 E-value=5.8e-12 Score=61.31 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=57.8
Q ss_pred CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC----CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC-C
Q psy17205 14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE----RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM-G 88 (106)
Q Consensus 14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~-~ 88 (106)
+..+.+..|+.+.|.|...+ |.+.+.|++++..+.... ++... ...|.|.++...|.|.|.|.+.+.. +
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~--p~~~i~W~k~~~~~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~~~~~~ 76 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS--NLASVVWLFQGGPLQRKEEPEERLLVT----EDGLLIRSVSPADAGVYTCQSVEHGFK 76 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC--CCceEEEEECCcccccccCcCceEEEc----CCCEEEccCCHHHCEEEEEEEecCccc
Confidence 44567888999999999865 778999999987665432 22221 1248899999999999999998754 4
Q ss_pred cceEEEEEEE
Q psy17205 89 KTRQYLELSG 98 (106)
Q Consensus 89 ~~~~~~~l~~ 98 (106)
.....+.|.+
T Consensus 77 ~~~~~~~l~V 86 (89)
T cd04979 77 QTLATYSLNV 86 (89)
T ss_pred eeEeEEEEEE
Confidence 4445566654
No 91
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.37 E-value=1.3e-11 Score=59.31 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=51.3
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 90 (106)
..+..|+.++|.|....+.+.+.+.|++++..+... .....|.|..+...|+|.|.|.+.+..+..
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 357789999999998542566789999998765431 113369999999999999999999987643
No 92
>KOG4194|consensus
Probab=99.37 E-value=6.6e-12 Score=78.00 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=74.0
Q ss_pred cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEE-cCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205 7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLK-LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85 (106)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 85 (106)
.|.|...+..+.+..|+...+.|.+.| .|.|.+.|.++|.. ++....-.+..-.....+.|.+++.+|.|.|+|.+.|
T Consensus 612 ~PsFtktP~dltl~tg~mArl~CaAtG-~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n 690 (873)
T KOG4194|consen 612 APSFTKTPEDLTLRTGQMARLECAATG-HPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQN 690 (873)
T ss_pred cCccccCcccceeecccceeeeeeccC-CCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeec
Confidence 467888899999999999999999999 99999999988755 6654222222212244689999999999999999999
Q ss_pred CCCcceEEEEEEEeCC
Q psy17205 86 SMGKTRQYLELSGKYP 101 (106)
Q Consensus 86 ~~~~~~~~~~l~~~~~ 101 (106)
.+|...+...+.+...
T Consensus 691 ~AG~isanAtL~V~e~ 706 (873)
T KOG4194|consen 691 VAGQISANATLTVLET 706 (873)
T ss_pred cccceeeceEEEEecC
Confidence 9999887666664433
No 93
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.35 E-value=1.8e-11 Score=59.97 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=52.6
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEc-CC-------------CCCEEEEE---cCcEEEEEEcccCCCCCEee
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKL-DT-------------TERRIMET---RGRRHTLVIRKVLFTDFGNY 79 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l-~~-------------~~~~~~~~---~~~~~~l~~~~~~~~~~g~y 79 (106)
+.+..|+++.|.|...+ .+.+.+.|+++++.. .. ..++.... ......|+|.++..+|+|.|
T Consensus 2 v~~~~G~~VtL~C~~s~-~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTASQ-KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEeCC-CCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 34678999999999998 899999999765322 11 11222222 23456799999999999999
Q ss_pred EEEEEcCCCc
Q psy17205 80 SCVAENSMGK 89 (106)
Q Consensus 80 ~C~~~~~~~~ 89 (106)
.|.+.+..++
T Consensus 81 ~C~v~~~~~~ 90 (94)
T cd07690 81 ICEVEDKKEE 90 (94)
T ss_pred EEEECCccce
Confidence 9999987654
No 94
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.34 E-value=9.7e-12 Score=60.98 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=53.1
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEc--CCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKL--DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l--~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 89 (106)
..+..|+.+.|.|....+.|.+.+.|++++..+ ....+..+.. ....|.+.++...|.|+|.|.+.|....
T Consensus 13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred eeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccC
Confidence 567789999999977654899999999997643 2222322222 1237999999999999999999997544
No 95
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.32 E-value=7.4e-11 Score=53.22 Aligned_cols=63 Identities=33% Similarity=0.472 Sum_probs=48.6
Q ss_pred cCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205 21 RGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~ 88 (106)
.|+.+.|.|...+ .+.+.+.|++++..+.. ..... .....|.+.++...|.|.|.|.+.+..|
T Consensus 1 ~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEG-DPVPNITWLKDGKPLPE--SNRLS--ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCcc-CCCCeEEEEECCEECCC--CCEEe--cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 3778999999887 88899999999887762 11111 2234799999999999999999987643
No 96
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.30 E-value=3e-10 Score=55.89 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=52.6
Q ss_pred CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEE-c-------CCCCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205 14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLK-L-------DTTERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAE 84 (106)
Q Consensus 14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~-l-------~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~ 84 (106)
.+.+.+..|+.+.|.|...+ .+.+.+.|++.+.. + ....++.... ......|.|.++...|.|.|.|.+.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKN-NDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY 82 (95)
T ss_pred CCcEEEcCCCCEEEEEEECC-CCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence 34577889999999999988 88899999853211 0 1123443321 1234579999999999999999998
Q ss_pred cCC
Q psy17205 85 NSM 87 (106)
Q Consensus 85 ~~~ 87 (106)
+..
T Consensus 83 ~~~ 85 (95)
T cd05717 83 TMP 85 (95)
T ss_pred cCC
Confidence 764
No 97
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.29 E-value=3.2e-11 Score=59.04 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=54.9
Q ss_pred CeEEeecCCeEEEEEE-EeecCCCCeEEEeeCCEE-cCCCCCEEEEEcCcEEEEEEcccCCCCCE-eeEEEEEcCCCc
Q psy17205 15 RRIIETRGRRHTLIFF-FHFAFCRPQVIWYKETLK-LDTTERRIMETRGRRHTLVIRKVLFTDFG-NYSCVAENSMGK 89 (106)
Q Consensus 15 ~~~~~~~g~~~~~~c~-~~~~~p~p~~~w~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~y~C~~~~~~~~ 89 (106)
..+.+.+|+.+.|.|. ..+ .|.|.+.|+.++.. +....++.+...+ .|.|.++...|.| .|.|.+.+....
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g-~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKS-AVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred ceeEEecCCCEEEEecCCCC-CCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEEccccc
Confidence 4577889999999997 577 99999999976543 3334454443333 7999999999999 799999987533
No 98
>KOG3513|consensus
Probab=99.29 E-value=5.9e-11 Score=77.46 Aligned_cols=80 Identities=33% Similarity=0.373 Sum_probs=67.8
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 96 (106)
+.+..|.++.+.|...+ .|.|.++|.+.+..+....++.+..++ +|.|.++...|.|.|+|++.|.+|.......|
T Consensus 436 ~~a~~g~~v~i~C~~~a-sP~p~~~W~k~~~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L 511 (1051)
T KOG3513|consen 436 VMAVVGGTVTIDCKPFA-SPKPKVSWLKGGEKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNL 511 (1051)
T ss_pred EEEEeCCeEEEeeccCC-CCcceEEEEcCCcccccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceEEEE
Confidence 45667999999999999 999999999998866666677765555 89999999999999999999999998876666
Q ss_pred EEeC
Q psy17205 97 SGKY 100 (106)
Q Consensus 97 ~~~~ 100 (106)
.++.
T Consensus 512 ~Vkd 515 (1051)
T KOG3513|consen 512 IVKD 515 (1051)
T ss_pred EEec
Confidence 5443
No 99
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.29 E-value=3.1e-10 Score=55.43 Aligned_cols=77 Identities=22% Similarity=0.238 Sum_probs=53.6
Q ss_pred eEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EEc----CCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc-CCC
Q psy17205 16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LKL----DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN-SMG 88 (106)
Q Consensus 16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~l----~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~-~~~ 88 (106)
.+....|+.+.|.|.. + .|.|.+.|++.. ..+ ....+..... ..|.|..+...|+|.|.|.+.+ ..+
T Consensus 5 ~~~~~eG~~v~L~C~~-~-~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~----~~L~I~~~~~~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 5 VVYGVENNSTFLECLP-K-SPQASVKWLFQRGGDQRKEEVKTEERLIHTE----RGLLLRSLQRSDAGVYTCTAVEHSFS 78 (91)
T ss_pred EEEEecCCcEEEEEEC-C-CCCceEEEEEECCCCCccccccccccEEEec----CeEEEeeCChhHCEEEEEEEEccCCe
Confidence 3567789999999995 6 788999999742 111 1122332222 2599999999999999999984 555
Q ss_pred cceEEEEEEE
Q psy17205 89 KTRQYLELSG 98 (106)
Q Consensus 89 ~~~~~~~l~~ 98 (106)
.....+.|.+
T Consensus 79 ~~~~~~~l~v 88 (91)
T cd05871 79 QTLAKYTLHV 88 (91)
T ss_pred EEEEEEEEEE
Confidence 5555555554
No 100
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.25 E-value=1.7e-09 Score=53.36 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=64.2
Q ss_pred CeEEeecCCeEEEEEEEeecCCCCe-EEEeeCCEEcCCCCC--EEEEEc---CcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205 15 RRIIETRGRRHTLIFFFHFAFCRPQ-VIWYKETLKLDTTER--RIMETR---GRRHTLVIRKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 15 ~~~~~~~g~~~~~~c~~~~~~p~p~-~~w~~~~~~l~~~~~--~~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~~~ 88 (106)
..+.+..|+++.|.|...+ .|.|. +.|.+.+..+..... ...... ...+.|.+.+++..|.|.|.|.+.|...
T Consensus 11 ~~~~v~~gE~~~L~V~ieA-YP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEA-YPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEe-CCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 3477889999999999999 99997 999988776644322 111111 1235799999999999999999999988
Q ss_pred cceEEEEEEE
Q psy17205 89 KTRQYLELSG 98 (106)
Q Consensus 89 ~~~~~~~l~~ 98 (106)
..+..|.|.+
T Consensus 90 ~~s~tF~l~v 99 (101)
T cd05860 90 SASVTFNVYV 99 (101)
T ss_pred eEEEEEEEEE
Confidence 8887887764
No 101
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.24 E-value=1.4e-10 Score=52.97 Aligned_cols=61 Identities=26% Similarity=0.266 Sum_probs=44.7
Q ss_pred CCeEEEEEEE-eecCCCCeEEEeeCCEEcCCCCCEEEEEcCcE--EEEEEcccCCCCCEeeEEEE
Q psy17205 22 GRRHTLIFFF-HFAFCRPQVIWYKETLKLDTTERRIMETRGRR--HTLVIRKVLFTDFGNYSCVA 83 (106)
Q Consensus 22 g~~~~~~c~~-~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~--~~l~~~~~~~~~~g~y~C~~ 83 (106)
|+.+.|.|.+ .. .+...+.|++++..+.............. ..|.|.++...|.|.|.|.+
T Consensus 1 G~~v~L~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSG-PPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEES-SSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCC-CCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6889999999 55 67889999999876554432222222211 13999999999999999975
No 102
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.24 E-value=3.5e-10 Score=54.37 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=53.3
Q ss_pred CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205 15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85 (106)
Q Consensus 15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 85 (106)
+...+..|+.+.|.|...+ ....+.|+.++..+....++.....+ +.|..++..|+|.|.|.+..
T Consensus 4 ~~~tv~~g~~v~L~C~~~s--~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRS--NLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred eEEEEecCCCEEEECCCCC--CCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEec
Confidence 4567889999999999988 46799999999888766565545443 78999999999999999774
No 103
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.22 E-value=4.7e-10 Score=55.49 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=54.8
Q ss_pred eEEeecCCeEEEEEEEe----------ecCCCCeEEEeeCCEEcCCCC-------CEEEEEcCcEEEEEEcccCCCCCEe
Q psy17205 16 RIIETRGRRHTLIFFFH----------FAFCRPQVIWYKETLKLDTTE-------RRIMETRGRRHTLVIRKVLFTDFGN 78 (106)
Q Consensus 16 ~~~~~~g~~~~~~c~~~----------~~~p~p~~~w~~~~~~l~~~~-------~~~~~~~~~~~~l~~~~~~~~~~g~ 78 (106)
.+.+..|+.+.+.|... +......+.|++++..+.... |+... ...|.+..+..+|+|.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~----~~~Lwf~Pa~~eDSG~ 84 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE----EDSIWFRPAELQDSGL 84 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe----CCEEEEEeCChhhCeE
Confidence 36677899999999861 112344789999974443322 22222 2369999999999999
Q ss_pred eEEEEEcCCCcceEEEEEE
Q psy17205 79 YSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 79 y~C~~~~~~~~~~~~~~l~ 97 (106)
|.|.+.|...+....+.|+
T Consensus 85 Y~C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 85 YTCVLRNSTYCMKVSMSLT 103 (104)
T ss_pred EEEEECCCCcceEEEEEEE
Confidence 9999999876666666554
No 104
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.21 E-value=6.5e-10 Score=52.68 Aligned_cols=70 Identities=30% Similarity=0.414 Sum_probs=51.7
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc-ceEEEE
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK-TRQYLE 95 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~-~~~~~~ 95 (106)
..+..|+.+.|.|.+.+ .|.+.+.|++++..+.... . .+.+..+...|.|.|.|.+.+..+. ....+.
T Consensus 9 ~~v~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~-------~---~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~ 77 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSG-NPPPQVQWYKNGSPINSSQ-------N---GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVN 77 (80)
T ss_dssp SEEETTSEEEEEEEEES-SSSSEEEEEETTEEEEEES-------S---EEEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEc-ccceeeeeeeeeeeeeeee-------e---eeeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence 34678999999999998 8889999999886655321 1 1566778889999999999986542 333444
Q ss_pred EE
Q psy17205 96 LS 97 (106)
Q Consensus 96 l~ 97 (106)
|.
T Consensus 78 v~ 79 (80)
T PF13895_consen 78 VT 79 (80)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 105
>KOG4221|consensus
Probab=99.18 E-value=5.8e-10 Score=73.67 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=66.9
Q ss_pred eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205 10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89 (106)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 89 (106)
|...+....+..|+.+.|.|.+.+ .|.|++.|.+++..+.... ..+.. .....|.+.++...|+|.|.|++.|....
T Consensus 240 fl~~p~~~~v~~g~~v~leCvvs~-~p~p~v~Wlrng~~i~~ds-~rivl-~g~~slliS~a~~~dSg~YtC~Atn~~D~ 316 (1381)
T KOG4221|consen 240 FLDEPSNAVVVEGDDVVLECVVSG-VPKPSVKWLRNGEKISVDS-YRIVL-VGGSSLLISNATDDDSGKYTCRATNTNDS 316 (1381)
T ss_pred eecCCCccccccCCcEEEEEEecC-CCCCceEEeeCCeeeeecc-eEEEE-ecccceEEeccccccCceEEEEecCCCcc
Confidence 445666677889999999999999 9999999999998877653 22222 11336999999999999999999995544
Q ss_pred ceEEEEEEEeCC
Q psy17205 90 TRQYLELSGKYP 101 (106)
Q Consensus 90 ~~~~~~l~~~~~ 101 (106)
..+...|.+..+
T Consensus 317 idasaev~V~a~ 328 (1381)
T KOG4221|consen 317 IDASAEVTVLAP 328 (1381)
T ss_pred cccceEEEEEcC
Confidence 455555554444
No 106
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.18 E-value=4.6e-10 Score=63.26 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=53.8
Q ss_pred eEEeecCCeEEEEEEEeec----CCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205 16 RIIETRGRRHTLIFFFHFA----FCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 16 ~~~~~~g~~~~~~c~~~~~----~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
...+..|+.+.|.|...++ .|.|.+.|++++..+....++.+... ...|.|.++...|.|.|.|.+...
T Consensus 138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~--~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNN--NSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred cceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCC--CCEEEECcCCHHhCEEEEEEEEEe
Confidence 3455689999999998631 35789999999999876655543322 337999999999999999999874
No 107
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.18 E-value=5.6e-09 Score=51.29 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=54.6
Q ss_pred CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEc--------CCCCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205 14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKL--------DTTERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAE 84 (106)
Q Consensus 14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l--------~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~ 84 (106)
.+++.+..|+++.|.|...+ .....+.|++-+..+ ....|+.... .+...+|.|..++..|.|.|.|.+.
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~-~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~ 82 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKN-NDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY 82 (95)
T ss_pred cCceEEcCCCcEEEEEEEcc-CCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence 34577889999999999998 766677787655322 2344665554 3557789999999999999999987
Q ss_pred cC
Q psy17205 85 NS 86 (106)
Q Consensus 85 ~~ 86 (106)
..
T Consensus 83 t~ 84 (95)
T cd05881 83 TD 84 (95)
T ss_pred cc
Confidence 64
No 108
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.14 E-value=2.2e-09 Score=51.91 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=50.4
Q ss_pred CCeEEEEEEEeecCCC--CeEEEeeCCEEcCCC---C--C-EEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205 22 GRRHTLIFFFHFAFCR--PQVIWYKETLKLDTT---E--R-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~---~--~-~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~ 93 (106)
|+.+.|.|.+.+ .+. ..+.|...+...... . + ...........|.|.++...|.|.|.|.+.|..+.....
T Consensus 1 Ge~~~L~C~~~~-~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTART-ELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEe-CCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 678999999987 654 477997665432110 1 1 111111234579999999999999999999987766555
Q ss_pred EEEE
Q psy17205 94 LELS 97 (106)
Q Consensus 94 ~~l~ 97 (106)
..|.
T Consensus 80 t~~~ 83 (86)
T cd05862 80 TIVI 83 (86)
T ss_pred EEEE
Confidence 5444
No 109
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.11 E-value=7.9e-09 Score=61.27 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=55.2
Q ss_pred CCeEEeecCCeEEEEEEEeecCCC---CeEEEeeCCEEcCCCC-----CEEEEEc--------CcEEEEEEcccCCCCCE
Q psy17205 14 ERRIIETRGRRHTLIFFFHFAFCR---PQVIWYKETLKLDTTE-----RRIMETR--------GRRHTLVIRKVLFTDFG 77 (106)
Q Consensus 14 ~~~~~~~~g~~~~~~c~~~~~~p~---p~~~w~~~~~~l~~~~-----~~~~~~~--------~~~~~l~~~~~~~~~~g 77 (106)
+..+.+..|+.+.|.|.+.+ .|. +.+.|++++..+.... ++..... .....|.|.++...|.|
T Consensus 227 p~~~~~~~G~~v~L~C~a~g-~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G 305 (326)
T PHA02785 227 PEGVVTSIGSNLTIACRVSL-RPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDAT 305 (326)
T ss_pred CCcEEecCCCcEEEEEEEEC-CCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCe
Confidence 34566677999999999998 776 4799999998875421 2111110 11346999999999999
Q ss_pred eeEEEEEcCCCc
Q psy17205 78 NYSCVAENSMGK 89 (106)
Q Consensus 78 ~y~C~~~~~~~~ 89 (106)
.|.|.+.|..+.
T Consensus 306 ~Y~C~A~n~~~~ 317 (326)
T PHA02785 306 TFTCMAFTIPSI 317 (326)
T ss_pred eeEEEEEeccCc
Confidence 999999997643
No 110
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.10 E-value=6.6e-09 Score=52.27 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=54.9
Q ss_pred ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEE-----c---------CCCCCEEEEEc--CcEEEEEEcccCCCC
Q psy17205 12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLK-----L---------DTTERRIMETR--GRRHTLVIRKVLFTD 75 (106)
Q Consensus 12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~-----l---------~~~~~~~~~~~--~~~~~l~~~~~~~~~ 75 (106)
..+..+.+..|+++.|.|...+ .+...+.|++.... + ....++.+... .....|.|.+++.+|
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~-~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYST-STFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECC-CCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 3455678889999999999988 67889999975310 0 01234444332 356789999999999
Q ss_pred CEeeEEEEEcCC
Q psy17205 76 FGNYSCVAENSM 87 (106)
Q Consensus 76 ~g~y~C~~~~~~ 87 (106)
+|.|.|.+.+..
T Consensus 82 sG~Y~C~~~~~~ 93 (109)
T cd04983 82 SAVYFCALSESG 93 (109)
T ss_pred CEEEEEEEecCC
Confidence 999999998653
No 111
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.08 E-value=1.3e-09 Score=51.82 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=47.9
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE--cCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET--RGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 90 (106)
+.|.|...++.|.+.+.||+++..+.......... ......|.+......|.+.|.|.+.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 67899998768999999999999886532110000 0123368888888889999999999987653
No 112
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.06 E-value=3.3e-09 Score=52.09 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=51.3
Q ss_pred EEeecCCeEEEEEEE-ee---cCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205 17 IIETRGRRHTLIFFF-HF---AFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~-~~---~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 90 (106)
..+..|....|.|+- .+ ..+.+.+.||+++..+....+...... ....|.+..+...|.|.|.|.+.+..+..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~-~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK-GSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC-CCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 455678899999973 12 035679999999988875432211111 12369999999999999999999875443
No 113
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=99.02 E-value=1.2e-08 Score=51.19 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=53.0
Q ss_pred eccCCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCC-----EEcC-------C--CCCEEEEEcCcEEEEEEcccCCCC
Q psy17205 11 DTTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKET-----LKLD-------T--TERRIMETRGRRHTLVIRKVLFTD 75 (106)
Q Consensus 11 ~~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~-----~~l~-------~--~~~~~~~~~~~~~~l~~~~~~~~~ 75 (106)
...+..+.+..|+++.|.|...+ .. ...+.||+.. ..+. . ..++..........|.|.+++.+|
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~-~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQ-SVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECC-CCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 34566678889999999999876 54 5679998743 1110 0 123444333455679999999999
Q ss_pred CEeeEEEEEcC
Q psy17205 76 FGNYSCVAENS 86 (106)
Q Consensus 76 ~g~y~C~~~~~ 86 (106)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998753
No 114
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.00 E-value=2.6e-08 Score=50.42 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=51.2
Q ss_pred cCCeEEEEEEEeecCC------------CCeEEEeeCCE-----EcC----------C-CCCEEEEE---cCcEEEEEEc
Q psy17205 21 RGRRHTLIFFFHFAFC------------RPQVIWYKETL-----KLD----------T-TERRIMET---RGRRHTLVIR 69 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p------------~p~~~w~~~~~-----~l~----------~-~~~~~~~~---~~~~~~l~~~ 69 (106)
.|++++|.|.... .. .+.+.|++... .+. . ..|+.+.. .....+|+|.
T Consensus 1 ~G~~VtLpC~~~~-~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~ 79 (112)
T cd05900 1 LGSSLLIPCYFQD-PIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEIT 79 (112)
T ss_pred CCCcEEEeeEEeC-CcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEe
Confidence 4789999998876 33 35899987421 110 0 12333332 2346789999
Q ss_pred ccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 70 KVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 70 ~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
++..+|.|.|.|.+.....-....+.|.
T Consensus 80 nl~~sDsG~Y~C~V~~g~~~~~~~v~l~ 107 (112)
T cd05900 80 ELRSNDSGTYRCEVMHGIEDNYDTVEVQ 107 (112)
T ss_pred ecccccCEEEEEEEecCCCCceeEEEEE
Confidence 9999999999999997765555555554
No 115
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.95 E-value=3.3e-09 Score=49.54 Aligned_cols=73 Identities=22% Similarity=0.325 Sum_probs=45.6
Q ss_pred ceeeccCCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205 8 LKLDTTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85 (106)
Q Consensus 8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 85 (106)
|.+...........+. +.|.|.+.+ .+ .+.+.|+ ....... ............|.+..+...|.|.|.|.+.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~-~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEG-GPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESS-EESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEcc-ccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3444444444433333 999999998 66 7899998 1111000 00111123345799999999999999999876
No 116
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.95 E-value=5.5e-08 Score=46.52 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=42.9
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEE-EEEcC----cEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRI-METRG----RRHTLVIRKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~-~~~~~----~~~~l~~~~~~~~~~g~y~C~~~~~~~ 88 (106)
+.|.|.+.++.|.+.+.|++++..+....... ....+ ....|.+......+.+.|.|.+.+...
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 57899998735888999999998876532111 11111 123466666666678899999998643
No 117
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.94 E-value=2.5e-08 Score=49.76 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=50.1
Q ss_pred EeecCCeEEEEEEEeecC-CCCeEEEeeCCE-----Ec------------CCCCCEEEEEcC--cEEEEEEcccCCCCCE
Q psy17205 18 IETRGRRHTLIFFFHFAF-CRPQVIWYKETL-----KL------------DTTERRIMETRG--RRHTLVIRKVLFTDFG 77 (106)
Q Consensus 18 ~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~~-----~l------------~~~~~~~~~~~~--~~~~l~~~~~~~~~~g 77 (106)
.+..|+++.|.|.... . ....+.|++... .+ ....++.+.... ....|.|.+++..|.|
T Consensus 2 ~v~~G~~v~L~C~~~~-~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSG-SFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeC-CcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 4568999999999988 6 667899987532 11 011233333322 4678999999999999
Q ss_pred eeEEEEEcCCC
Q psy17205 78 NYSCVAENSMG 88 (106)
Q Consensus 78 ~y~C~~~~~~~ 88 (106)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987654
No 118
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.91 E-value=3e-08 Score=56.01 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=57.6
Q ss_pred CeEEeecCCeEEEEEEEeecCC-----------CCeEEEeeCCEEc--C-CCCCE-----E-EEEcCcEEEEEEcccCCC
Q psy17205 15 RRIIETRGRRHTLIFFFHFAFC-----------RPQVIWYKETLKL--D-TTERR-----I-METRGRRHTLVIRKVLFT 74 (106)
Q Consensus 15 ~~~~~~~g~~~~~~c~~~~~~p-----------~p~~~w~~~~~~l--~-~~~~~-----~-~~~~~~~~~l~~~~~~~~ 74 (106)
..+.+.+|+.+.|.|...+ .+ .+.+.|++.+... . ...+. . .........|.|.++...
T Consensus 30 ~~~~v~eGe~v~L~C~~~~-~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKH-YKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred ceEEecCCCCEEEEccccc-cccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 3467789999999999866 44 3489999987531 1 11110 0 000011347999999999
Q ss_pred CCEeeEEEEEcCCCcceEEEEEEEe
Q psy17205 75 DFGNYSCVAENSMGKTRQYLELSGK 99 (106)
Q Consensus 75 ~~g~y~C~~~~~~~~~~~~~~l~~~ 99 (106)
|.|.|.|.+.|..+.....+.|.+.
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~ 133 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFD 133 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEe
Confidence 9999999999988777766666653
No 119
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.89 E-value=3.9e-08 Score=58.39 Aligned_cols=76 Identities=20% Similarity=0.188 Sum_probs=54.7
Q ss_pred EEeecCCeEEEEEEE-----eecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205 17 IIETRGRRHTLIFFF-----HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~-----~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~ 91 (106)
.....|+.+.+.|.. .| .|.+.+.|++++.... +...... ...+.+..+...|+|.|.|.+.|..+...
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g-~p~~~i~W~K~g~~~~---~~~~~~~--g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~ 109 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSG-YNILDILWEKRGADND---RIIPIDN--GSNMLILNPTQSDSGIYICITKNETYCDM 109 (326)
T ss_pred hhhhcCCCEEEECCCccccccC-CCCceEEEEECCCccc---eEEEccC--CceEEEcccCcccCeEEEEEEECCCcceE
Confidence 345579999999986 56 7889999999874211 1111111 12477888899999999999999988777
Q ss_pred EEEEEEE
Q psy17205 92 QYLELSG 98 (106)
Q Consensus 92 ~~~~l~~ 98 (106)
..+.|.+
T Consensus 110 ~s~~L~V 116 (326)
T PHA02785 110 MSLNLTI 116 (326)
T ss_pred EEEEEEE
Confidence 6665553
No 120
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.89 E-value=2.1e-07 Score=46.62 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=51.1
Q ss_pred cCCeEEEEEEEeecCC------CCeEEEeeCC-----E-Ec-C-CCCC--------EEEE---EcCcEEEEEEcccCCCC
Q psy17205 21 RGRRHTLIFFFHFAFC------RPQVIWYKET-----L-KL-D-TTER--------RIME---TRGRRHTLVIRKVLFTD 75 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p------~p~~~w~~~~-----~-~l-~-~~~~--------~~~~---~~~~~~~l~~~~~~~~~ 75 (106)
.|+++.|.|.... .+ ...+.|++.. . .+ . .... .... ......+|.|.+++..|
T Consensus 1 ~G~~V~L~C~~~~-~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHL-EPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeEC-CcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHH
Confidence 4889999999876 43 4689998762 1 11 0 0100 0111 12346689999999999
Q ss_pred CEeeEEEEEcCCCcceEEEEEE
Q psy17205 76 FGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 76 ~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
.|.|.|.+.+..+.....+.|.
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~ 101 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELE 101 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEE
Confidence 9999999998766666666555
No 121
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.89 E-value=7e-08 Score=48.70 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=51.7
Q ss_pred ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCE-----Ec---C----------CCCCEEEEEc-CcEEEEEEcccC
Q psy17205 12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETL-----KL---D----------TTERRIMETR-GRRHTLVIRKVL 72 (106)
Q Consensus 12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~-----~l---~----------~~~~~~~~~~-~~~~~l~~~~~~ 72 (106)
..+..+.+..|+++.|.|...+ +.+.+.||+... .| . ...++..... .....|.|.+++
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~--~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~ 80 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS--GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE 80 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC--CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence 3456678889999999999866 567899998531 11 0 0123333222 245679999999
Q ss_pred CCCCEeeEEEEEcC
Q psy17205 73 FTDFGNYSCVAENS 86 (106)
Q Consensus 73 ~~~~g~y~C~~~~~ 86 (106)
.+|+|.|.|.+.+.
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999998764
No 122
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.86 E-value=2.3e-08 Score=48.83 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=51.1
Q ss_pred eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205 9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
.+...+. ..+..|++++|.|.... +...+.|++++....... ....+....|.+.++...|.|.|.|...+.
T Consensus 4 ~L~a~p~-~vV~~G~~VtL~C~~~~--~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 4 SLWAEPS-SVVPLGKPVTLRCQGPY--GAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred EEEecCC-CccCCCCcEEEEEecCC--CCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4444443 45679999999997754 677888999876433211 111233457999999999999999999875
No 123
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.84 E-value=2.2e-07 Score=46.51 Aligned_cols=76 Identities=24% Similarity=0.404 Sum_probs=51.4
Q ss_pred cCCeEEEEEEEeecCC------CCeEEEeeCCE------E-c-CC----------CCCEEEEE-cCcEEEEEEcccCCCC
Q psy17205 21 RGRRHTLIFFFHFAFC------RPQVIWYKETL------K-L-DT----------TERRIMET-RGRRHTLVIRKVLFTD 75 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p------~p~~~w~~~~~------~-l-~~----------~~~~~~~~-~~~~~~l~~~~~~~~~ 75 (106)
.|+++.|.|.... .+ ...+.|++... . + .. ..++.+.. .....+|.|.++...|
T Consensus 1 ~G~~vtL~C~~~~-~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHY-EPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeEC-CCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHH
Confidence 4789999998876 43 35699997531 0 1 10 11222211 1235679999999999
Q ss_pred CEeeEEEEEcCCCcceEEEEEE
Q psy17205 76 FGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 76 ~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
.|.|.|.+.+..+.....+.|.
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~ 101 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALR 101 (106)
T ss_pred CEEEEEEEEecccceEEEEEEE
Confidence 9999999998877777766655
No 124
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.84 E-value=1.6e-07 Score=47.82 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=52.0
Q ss_pred ccCCeEEeecCCeEEEEEEEeec-CCCCeEEEeeCC--EE---c---C-----------CCCCEEEEEcC--cEEEEEEc
Q psy17205 12 TTERRIIETRGRRHTLIFFFHFA-FCRPQVIWYKET--LK---L---D-----------TTERRIMETRG--RRHTLVIR 69 (106)
Q Consensus 12 ~~~~~~~~~~g~~~~~~c~~~~~-~p~p~~~w~~~~--~~---l---~-----------~~~~~~~~~~~--~~~~l~~~ 69 (106)
..+..+.+..|+++.|.|...+. .+.+.+.|++.. .. + . ...++.+.... ....|+|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 34566788899999999998651 246689999842 11 0 0 12344444333 46789999
Q ss_pred ccCCCCCEeeEEEEEc
Q psy17205 70 KVLFTDFGNYSCVAEN 85 (106)
Q Consensus 70 ~~~~~~~g~y~C~~~~ 85 (106)
++..+|.|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999874
No 125
>KOG4221|consensus
Probab=98.81 E-value=5.9e-09 Score=69.18 Aligned_cols=93 Identities=19% Similarity=0.212 Sum_probs=74.2
Q ss_pred cccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205 5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE 84 (106)
Q Consensus 5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~ 84 (106)
..+|.|...+..+.+.++.++.|.|...+ .|.|.+.|++++..+...+.+.+...+ .++|..+...|.|.|.|...
T Consensus 326 ~a~P~~~~~p~~l~A~e~~die~ec~~~g-~p~p~v~w~kNgd~~ipsdy~ki~~~~---~lrIlgi~~sdeg~yQcvae 401 (1381)
T KOG4221|consen 326 LAPPGFTKAPTTLVAHESMDIEFECPVSG-KPIPTVRWYKNGDRIIPSDYFKIVGGG---NLRILGIVKSDEGFYQCVAE 401 (1381)
T ss_pred EcCCCCCCCCcceeeeeccceeEeCCCCC-CCcceEEEEecCcccCcccceEecCCC---CcEEEEEecccchhhhhhhc
Confidence 34567777777788888999999999999 899999999999877766555555543 28888888999999999999
Q ss_pred cCCCcceEEEEEEEeCC
Q psy17205 85 NSMGKTRQYLELSGKYP 101 (106)
Q Consensus 85 ~~~~~~~~~~~l~~~~~ 101 (106)
|..|.......+.+++.
T Consensus 402 n~~G~a~a~a~l~vv~~ 418 (1381)
T KOG4221|consen 402 NDAGSAQAAAQLEVVPQ 418 (1381)
T ss_pred cCcccccchhhheeccC
Confidence 99988777655543333
No 126
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.81 E-value=3.5e-07 Score=45.34 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=47.6
Q ss_pred CCeEEEEEEEeecCC---CCeEEEeeCCE--Ec---------C------CCCCEEEEE---cCcEEEEEEcccCCCCCEe
Q psy17205 22 GRRHTLIFFFHFAFC---RPQVIWYKETL--KL---------D------TTERRIMET---RGRRHTLVIRKVLFTDFGN 78 (106)
Q Consensus 22 g~~~~~~c~~~~~~p---~p~~~w~~~~~--~l---------~------~~~~~~~~~---~~~~~~l~~~~~~~~~~g~ 78 (106)
|+++.|.|.... .. ...+.|++... .+ . ...|+.+.. .....+|+|.+++..|.|.
T Consensus 1 G~~v~L~C~~~~-~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSP-KMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGL 79 (100)
T ss_pred CCcEEEEeEEcC-CCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEE
Confidence 678889998764 22 23577876541 11 0 001222211 1235689999999999999
Q ss_pred eEEEEEcCCCcceEEEEEE
Q psy17205 79 YSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 79 y~C~~~~~~~~~~~~~~l~ 97 (106)
|.|.+.+..+.....+.|.
T Consensus 80 Y~C~v~~~~~~~~~~i~l~ 98 (100)
T cd05713 80 YTCFFQSDGFYEEATVELK 98 (100)
T ss_pred EEEEEecCCcEEEEEEEEE
Confidence 9999998766666666655
No 127
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.80 E-value=4.1e-07 Score=44.85 Aligned_cols=75 Identities=24% Similarity=0.239 Sum_probs=48.3
Q ss_pred CeEEEEEEEeecCC---CCeEEEeeCCEE-------c--------CC--CCCEEEEEc-CcEEEEEEcccCCCCCEeeEE
Q psy17205 23 RRHTLIFFFHFAFC---RPQVIWYKETLK-------L--------DT--TERRIMETR-GRRHTLVIRKVLFTDFGNYSC 81 (106)
Q Consensus 23 ~~~~~~c~~~~~~p---~p~~~w~~~~~~-------l--------~~--~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C 81 (106)
+++.|.|.... .. ...+.|++.... . .. ..+..+... ....+|.|.++...|.|.|.|
T Consensus 1 ~~v~L~C~~~~-~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPV-PGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeC-CCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEE
Confidence 46789998876 43 347899875421 0 01 011111111 135689999999999999999
Q ss_pred EEEc-CCCcceEEEEEEE
Q psy17205 82 VAEN-SMGKTRQYLELSG 98 (106)
Q Consensus 82 ~~~~-~~~~~~~~~~l~~ 98 (106)
.+.. ..|...+.+.|.+
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 9875 5677777666653
No 128
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.79 E-value=1.2e-07 Score=46.87 Aligned_cols=68 Identities=19% Similarity=0.159 Sum_probs=48.4
Q ss_pred EeecCCeEEEEEEEeecC--CCCeEEEeeCCE--Ec---C---------CCCCEEEEEcCcEEEEEEcccCCCCCEeeEE
Q psy17205 18 IETRGRRHTLIFFFHFAF--CRPQVIWYKETL--KL---D---------TTERRIMETRGRRHTLVIRKVLFTDFGNYSC 81 (106)
Q Consensus 18 ~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~~--~l---~---------~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C 81 (106)
.+..|+++.|.|.... . ....+.||+... .+ . ...++..........|.|.+++.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~-~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSS-GNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcC-CCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence 3568999999999876 4 456789987431 11 0 0124554444556789999999999999999
Q ss_pred EEEcC
Q psy17205 82 VAENS 86 (106)
Q Consensus 82 ~~~~~ 86 (106)
.+.+.
T Consensus 81 ~~~~~ 85 (98)
T cd04984 81 QVWDS 85 (98)
T ss_pred EEccC
Confidence 98753
No 129
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.79 E-value=1.3e-06 Score=44.51 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=50.5
Q ss_pred CCeEEeecCCeEEEEEEEeecCC----CCeEEEe---------------eCCEEcCC-----CCCEEEEE--cCcEEEEE
Q psy17205 14 ERRIIETRGRRHTLIFFFHFAFC----RPQVIWY---------------KETLKLDT-----TERRIMET--RGRRHTLV 67 (106)
Q Consensus 14 ~~~~~~~~g~~~~~~c~~~~~~p----~p~~~w~---------------~~~~~l~~-----~~~~~~~~--~~~~~~l~ 67 (106)
+..+.+..|+.+.|.|.... .. ...+.|. +++..... ..|..... ...+.++.
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~-~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWS-SEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred cceEEEEcCCcEEEEEEEec-CCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 34567889999999999876 43 3588992 23332211 12332221 23467899
Q ss_pred EcccCCCCCEeeEEEEEcCCC
Q psy17205 68 IRKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 68 ~~~~~~~~~g~y~C~~~~~~~ 88 (106)
|.+++.+|.|.|.|.+.|..+
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred EccCCcccCEEEEEEEEcCCC
Confidence 999999999999999998754
No 130
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.78 E-value=5.3e-07 Score=45.56 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=49.9
Q ss_pred cCCeEEEEEEEeecCC----------CCeEEEeeCC--EE---c---------CC--CCCEEEEE---cCcEEEEEEccc
Q psy17205 21 RGRRHTLIFFFHFAFC----------RPQVIWYKET--LK---L---------DT--TERRIMET---RGRRHTLVIRKV 71 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p----------~p~~~w~~~~--~~---l---------~~--~~~~~~~~---~~~~~~l~~~~~ 71 (106)
.|+++.|.|.... .+ ...+.|++.. .. + .. ..|+.+.. .....+|+|.++
T Consensus 1 ~G~~V~LpC~~~~-~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l 79 (110)
T cd05878 1 LSSSVLLPCYFTL-PPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRL 79 (110)
T ss_pred CCCCEEEeeEeeC-CccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCC
Confidence 4889999999876 43 2568998752 11 1 00 01222211 134567999999
Q ss_pred CCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 72 LFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 72 ~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
+.+|.|.|.|.+.......+..+.|.
T Consensus 80 ~~sD~G~Y~C~v~~~~~~~~~~v~l~ 105 (110)
T cd05878 80 RSSDSGVYRCEVMHGIEDEQDTVPLE 105 (110)
T ss_pred ChhhCEEEEEEEEeCCCcceEEEEEE
Confidence 99999999999987655555555554
No 131
>KOG4222|consensus
Probab=98.77 E-value=3.6e-08 Score=65.27 Aligned_cols=80 Identities=26% Similarity=0.377 Sum_probs=62.7
Q ss_pred eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205 10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
|...++.+.+..|+.+.+.|....+.|.|.+.|.+++..+.... ...+...+ .|.|.++...|.|.|.|++.|..
T Consensus 134 frv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG---~LlIsnvrksD~GtY~CVatNmv 210 (1281)
T KOG4222|consen 134 FRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG---NLLISNVRKSDEGTYACVATNMV 210 (1281)
T ss_pred cccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC---cEEEeccccCCCceeeeeecccc
Confidence 34455567777899999999776547899999999999887442 23333333 69999999999999999999998
Q ss_pred CcceE
Q psy17205 88 GKTRQ 92 (106)
Q Consensus 88 ~~~~~ 92 (106)
|....
T Consensus 211 G~ReS 215 (1281)
T KOG4222|consen 211 GERES 215 (1281)
T ss_pred ccccc
Confidence 87664
No 132
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.76 E-value=2.5e-07 Score=46.36 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=48.7
Q ss_pred EeecCCeEEEEEEEeecCCCCeEEEeeCCEE-----c----CC----------CCCEEEEEcCcEEEEEEcccCCCCCEe
Q psy17205 18 IETRGRRHTLIFFFHFAFCRPQVIWYKETLK-----L----DT----------TERRIMETRGRRHTLVIRKVLFTDFGN 78 (106)
Q Consensus 18 ~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~-----l----~~----------~~~~~~~~~~~~~~l~~~~~~~~~~g~ 78 (106)
.+..|+++.|.|.... .....+.|++.... + .. ..|..+..+ .+|.|.++...|.|.
T Consensus 9 ~~~~G~~V~L~v~~~p-~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~n---gSL~I~~v~~~D~G~ 84 (105)
T cd05774 9 QVAEGENVLLLVHNLP-ENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPN---GSLLIQNVTQKDTGF 84 (105)
T ss_pred cccCCCCEEEEecCCC-CCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCC---CcEEEecCCcccCEE
Confidence 4568999999986654 44558999986311 1 11 112222222 379999999999999
Q ss_pred eEEEEEcCC-CcceEEEEE
Q psy17205 79 YSCVAENSM-GKTRQYLEL 96 (106)
Q Consensus 79 y~C~~~~~~-~~~~~~~~l 96 (106)
|.|.+.+.. ......+.+
T Consensus 85 Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 85 YTLQTITTNFQVEQATVHL 103 (105)
T ss_pred EEEEEEeCCccEEEEEEEE
Confidence 999998864 333334443
No 133
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.69 E-value=5.9e-07 Score=45.73 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=51.9
Q ss_pred ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec---------CCCCCEEEEE--cCcEEEEEEcccCCCC
Q psy17205 12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL---------DTTERRIMET--RGRRHTLVIRKVLFTD 75 (106)
Q Consensus 12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l---------~~~~~~~~~~--~~~~~~l~~~~~~~~~ 75 (106)
..+..+.+..|+++.|.|..........+.|++.. . .+ ....++.+.. ......|+|.++..+|
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 44566788899999999998761245678998742 1 11 0123454432 2346789999999999
Q ss_pred CEeeEEEEEc
Q psy17205 76 FGNYSCVAEN 85 (106)
Q Consensus 76 ~g~y~C~~~~ 85 (106)
.|.|.|.+..
T Consensus 84 sg~Y~C~~~~ 93 (116)
T cd07706 84 SAKYFCALST 93 (116)
T ss_pred CEEEEEEEEC
Confidence 9999999885
No 134
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.68 E-value=6.2e-07 Score=43.68 Aligned_cols=64 Identities=22% Similarity=0.220 Sum_probs=44.7
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCC------------------CCCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDT------------------TERRIMETRGRRHTLVIRKVLFTDFGNYSCVA 83 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~ 83 (106)
|++++|.|.... .....+.|++....... ..++.+. . ..+|.|.++...|+|.|.|.+
T Consensus 1 G~~VtL~c~~~~-~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~--~-~~sL~I~~l~~~DsG~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLP-ENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY--P-NGSLLIQNLTKEDSGTYTLQI 76 (92)
T ss_pred CCcEEEEcccCC-CCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc--C-CceEEEccCCchhcEEEEEEE
Confidence 678999998876 66678999886522110 0111111 1 257999999999999999999
Q ss_pred EcCCCc
Q psy17205 84 ENSMGK 89 (106)
Q Consensus 84 ~~~~~~ 89 (106)
....+.
T Consensus 77 ~~~~~~ 82 (92)
T cd05741 77 ISTNGV 82 (92)
T ss_pred EcCCCc
Confidence 886533
No 135
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.66 E-value=6.6e-07 Score=44.36 Aligned_cols=71 Identities=20% Similarity=0.132 Sum_probs=46.1
Q ss_pred EEeecCCeEEEEEEEeecCCCCe--EEEeeCCEEcCCCCCEEE--EEcCcEEEEEEcccCCCCCE-eeEEEEEcCCC
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQ--VIWYKETLKLDTTERRIM--ETRGRRHTLVIRKVLFTDFG-NYSCVAENSMG 88 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~--~~w~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~g-~y~C~~~~~~~ 88 (106)
..+..|+.+++.|.+.++.|.+. +.||+++..+........ .......++.+.. .+.|.| .|.|.+.+...
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~-~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITV-DREDHGANFSCETELDLR 86 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEec-chhhCCcEEEEEEEeccC
Confidence 34578999999999998567776 699999988865321110 0111233455543 345555 89999987643
No 136
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.65 E-value=1.9e-06 Score=43.90 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=48.7
Q ss_pred CCeEEeecCCeEEEEEEEeecCC----CCeEEEeeCCE------Ec---C-------CC----CCEEEEE--cCcEEEEE
Q psy17205 14 ERRIIETRGRRHTLIFFFHFAFC----RPQVIWYKETL------KL---D-------TT----ERRIMET--RGRRHTLV 67 (106)
Q Consensus 14 ~~~~~~~~g~~~~~~c~~~~~~p----~p~~~w~~~~~------~l---~-------~~----~~~~~~~--~~~~~~l~ 67 (106)
+..+.+..|+.+.|.|.... .. ...+.|++... .+ . .. .|+.+.. .....+|+
T Consensus 5 p~~v~v~~G~~vtL~C~~s~-~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSS-SEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeC-CCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 45577889999999998865 32 24689975321 11 0 01 1111111 12356799
Q ss_pred EcccCCCCCEeeEEEEEcCCC
Q psy17205 68 IRKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 68 ~~~~~~~~~g~y~C~~~~~~~ 88 (106)
|.+++.+|.|.|.|.+.+...
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCC
Confidence 999999999999999997644
No 137
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.64 E-value=9.9e-07 Score=44.93 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=48.7
Q ss_pred CCeEEeecCCeEEEEEEEeecCC----CCeEEEeeC----CE--Ec----C-----CC----CCEEEEE--cCcEEEEEE
Q psy17205 14 ERRIIETRGRRHTLIFFFHFAFC----RPQVIWYKE----TL--KL----D-----TT----ERRIMET--RGRRHTLVI 68 (106)
Q Consensus 14 ~~~~~~~~g~~~~~~c~~~~~~p----~p~~~w~~~----~~--~l----~-----~~----~~~~~~~--~~~~~~l~~ 68 (106)
+..+.+..|+++.|.|.... .+ ...+.|++. +. .+ . .. .+..... .....+|.|
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~-~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSS-SAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred CceEEEEcCCCEEEEEEEEe-CCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 45678889999999999865 33 236899742 11 11 0 00 1111111 123567999
Q ss_pred cccCCCCCEeeEEEEEcCCC
Q psy17205 69 RKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 69 ~~~~~~~~g~y~C~~~~~~~ 88 (106)
.+++..|.|.|.|.+.+..+
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eeCChhhCEEEEEEEEeCCC
Confidence 99999999999999997644
No 138
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.63 E-value=2.6e-06 Score=43.61 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=49.0
Q ss_pred cCCeEEeecCCeEEEEEEEeecCC------CCeEEEeeCCEE-------c-CC---------CCCEEEE--EcCcEEEEE
Q psy17205 13 TERRIIETRGRRHTLIFFFHFAFC------RPQVIWYKETLK-------L-DT---------TERRIME--TRGRRHTLV 67 (106)
Q Consensus 13 ~~~~~~~~~g~~~~~~c~~~~~~p------~p~~~w~~~~~~-------l-~~---------~~~~~~~--~~~~~~~l~ 67 (106)
.+..+.+..|+.++|.|.... .. ...+.|++.... + .. ..|+.+. .......|.
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~-~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~ 83 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSY-PADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL 83 (119)
T ss_pred CCCEEEEeccccEEEEEEeeC-cccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence 355678889999999998764 21 245889875311 0 00 0133332 123456899
Q ss_pred EcccCCCCCEeeEEEEEcC
Q psy17205 68 IRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 68 ~~~~~~~~~g~y~C~~~~~ 86 (106)
|.+++.+|+|.|.|.+...
T Consensus 84 I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 84 ISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EccCChhhCeEEEEEEEcC
Confidence 9999999999999998654
No 139
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.63 E-value=5e-06 Score=41.73 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=52.6
Q ss_pred ccCCeEEeecCCeEEEEEEEe-ecCCCCeEEEeeCCE-----EcC--------------CCCCEEEEEc--CcEEEEEEc
Q psy17205 12 TTERRIIETRGRRHTLIFFFH-FAFCRPQVIWYKETL-----KLD--------------TTERRIMETR--GRRHTLVIR 69 (106)
Q Consensus 12 ~~~~~~~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~~-----~l~--------------~~~~~~~~~~--~~~~~l~~~ 69 (106)
..+..+.+..|+++.|.|... . .....+.|++... .+. ...+..+..+ .....|.|.
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~-~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~ 84 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSS-SNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIK 84 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESS-SSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEES
T ss_pred EeCCeEEEecCCCEEEEEEEeCC-CCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEEC
Confidence 345668888999999999998 5 5677899987321 111 0112222222 235689999
Q ss_pred ccCCCCCEeeEEEEEcC
Q psy17205 70 KVLFTDFGNYSCVAENS 86 (106)
Q Consensus 70 ~~~~~~~g~y~C~~~~~ 86 (106)
++...|.|.|.|.+...
T Consensus 85 ~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 85 NLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp SESGGGEEEEEEEEEES
T ss_pred CCCcCcCEEEEEEEEEC
Confidence 99999999999999876
No 140
>KOG4222|consensus
Probab=98.62 E-value=8.9e-08 Score=63.53 Aligned_cols=91 Identities=24% Similarity=0.241 Sum_probs=69.4
Q ss_pred ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205 6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85 (106)
Q Consensus 6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 85 (106)
..|.|...+..+.+..|..+.+.|...| .|.|.+.|.+++..++......... ..++.+.++...|.|.|.|.+.|
T Consensus 224 e~P~f~~rp~~~~v~~g~~~~f~c~v~G-dP~P~Vrwkk~~~~~P~~ry~i~~d---~qtl~i~r~tp~deg~y~C~a~n 299 (1281)
T KOG4222|consen 224 EKPWFWKRPKDLAVLVGAAAEFDCRVGG-DPQPTVRWKKDDPSLPRSRYSILDD---TQTLRIDRVTPTDEGTYVCPAEN 299 (1281)
T ss_pred cCCccccccccceeecccccccccccCC-CCCCceeeeccCCCCCccceeeeec---cccccccccCCCcccceeeeccc
Confidence 4566777777788889999999999999 9999999998776666553222221 23689999999999999999999
Q ss_pred CCCcceEEEEEEEeC
Q psy17205 86 SMGKTRQYLELSGKY 100 (106)
Q Consensus 86 ~~~~~~~~~~l~~~~ 100 (106)
..|.-...-.+++..
T Consensus 300 ~vG~l~asa~ltV~a 314 (1281)
T KOG4222|consen 300 LVGGLEASATLTVQA 314 (1281)
T ss_pred cccccccccceEEec
Confidence 988776654444333
No 141
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.61 E-value=1.2e-06 Score=41.93 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=40.8
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-C---cEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-G---RRHTLVIRKVLFTDFGNYSCVAENSMGK 89 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 89 (106)
+.|.|.+.++.|.+.+.|++++..+........... + ....+.+......+...|.|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 578999988458889999999988764321111111 1 1223444444444567999999986543
No 142
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.60 E-value=1.4e-06 Score=41.60 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=42.7
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE---cCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET---RGRRHTLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~---~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
+.|.|.+.+..|.+.|.|++++..+.......... ......|.+..-..-|...|.|.+.|..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 57899998857889999999998887642211111 1123356665555556668999999865
No 143
>KOG4194|consensus
Probab=98.59 E-value=3.3e-07 Score=57.93 Aligned_cols=85 Identities=24% Similarity=0.358 Sum_probs=62.1
Q ss_pred cceeeccCCeEEeecCCeEEEEEEEeecCCC-CeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205 7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCR-PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85 (106)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 85 (106)
.|.+..+-....+..|+.+.+.|.+.+ .|. |++.|++.++.+...++..... ++.-+.+......|.|.|+|.+.+
T Consensus 706 ~p~f~~PL~~~~V~~get~vlqC~a~~-~~a~pr~~W~k~d~pil~t~rh~f~d--~dQllvv~~~~~~daG~yTcem~~ 782 (873)
T KOG4194|consen 706 TPSFSIPLEDQLVVVGETLVLQCLAEG-APADPRLEWFKEDKPILITERHTFPD--GDQLLVVKENLVEDAGIYTCEMSN 782 (873)
T ss_pred CCcccccccceEEEecceEEEEEecCC-CCCCccccccCCCCceEEeecccCCC--CCeEEEEEehhhhhcceEEEEEEe
Confidence 344555555677889999999999999 776 9999999987765544332222 233577777778999999999999
Q ss_pred CCCcceEEE
Q psy17205 86 SMGKTRQYL 94 (106)
Q Consensus 86 ~~~~~~~~~ 94 (106)
..|.....+
T Consensus 783 ~~~~~~~~i 791 (873)
T KOG4194|consen 783 TLGTERIHI 791 (873)
T ss_pred eccceeeEE
Confidence 877665543
No 144
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.58 E-value=6.1e-07 Score=44.08 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=44.5
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE 84 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~ 84 (106)
..+..|++++|.|.... ..-.+.|++++...................|.|..+...|+|.|.|...
T Consensus 10 ~vV~~G~~VTL~C~~~~--~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 10 PVVPSGENVTLQCHSDI--RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CccCCCCeEEEEEecCC--CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 45679999999997754 4457889998754322100000011234478999999999999999975
No 145
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.58 E-value=1.3e-06 Score=43.21 Aligned_cols=77 Identities=17% Similarity=0.115 Sum_probs=48.4
Q ss_pred cCCeEEEEEEEeecCCCCeEEEeeCCEEcC--C-----C------CCE--EEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205 21 RGRRHTLIFFFHFAFCRPQVIWYKETLKLD--T-----T------ERR--IMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~--~-----~------~~~--~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 85 (106)
.|++++|.|..........+.|++....+. . . .++ .........+|.|.+++.+|+|.|.|.+..
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 689999999664312344788987642211 0 0 011 122223456899999999999999999998
Q ss_pred CCCcc-eEEEEEE
Q psy17205 86 SMGKT-RQYLELS 97 (106)
Q Consensus 86 ~~~~~-~~~~~l~ 97 (106)
..+.. ...+.|.
T Consensus 83 ~~~~~~~~~f~L~ 95 (97)
T cd05775 83 KNGVTITKEFTLH 95 (97)
T ss_pred CCCCeEEEEEEEE
Confidence 76544 3345543
No 146
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.56 E-value=3.6e-06 Score=40.51 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=48.2
Q ss_pred EeecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205 18 IETRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95 (106)
Q Consensus 18 ~~~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 95 (106)
.+..|++++|.|.... ...| .+.|...+.... ........+|.+..+...|+|.|.|.+....-.....+.
T Consensus 10 ~lL~G~sLtLtl~~~s-~s~p~~~i~w~~P~n~~~------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~ 82 (88)
T cd07694 10 HVLSGTNLTLTLHGSS-NSLPAFKVEWRGPGNKSK------QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD 82 (88)
T ss_pred eeecCCcEEEEEecCC-CCCCCccEEEeCCCCccc------eeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence 5678999999999966 4444 899975442211 111122447889999999999999999754333333444
Q ss_pred EE
Q psy17205 96 LS 97 (106)
Q Consensus 96 l~ 97 (106)
+.
T Consensus 83 V~ 84 (88)
T cd07694 83 IK 84 (88)
T ss_pred EE
Confidence 43
No 147
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.52 E-value=2e-06 Score=42.09 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=45.3
Q ss_pred ecCCeEEEEEEEeecC-C-CCeEEEeeCCEEcCCCCC---EEEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCCC
Q psy17205 20 TRGRRHTLIFFFHFAF-C-RPQVIWYKETLKLDTTER---RIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 20 ~~g~~~~~~c~~~~~~-p-~p~~~w~~~~~~l~~~~~---~~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~~ 88 (106)
..|+.+.|.|.+.+ . | ...+.|++++..+..... ......+... .|.+......+.+.|.|.+.+...
T Consensus 11 ~~~~~~~L~C~a~g-~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATG-FYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEee-EECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 36889999999999 7 5 358999999988765432 1111112222 355555544588999999988643
No 148
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.50 E-value=6.4e-06 Score=39.55 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=41.3
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE-cC-c---EEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET-RG-R---RHTLVIRKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~-~~-~---~~~l~~~~~~~~~~g~y~C~~~~~~~ 88 (106)
+.|.|.+.+..|.+.+.|++++..+.......... .+ . ...+.+......+...|.|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 57899999845888999999998876543211111 11 1 12344444445566799999998653
No 149
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.48 E-value=3e-06 Score=42.40 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=45.1
Q ss_pred eecCCeEEEEEEEeecCCCCeEEEeeCCEE-------c---CC------------CCCEEEEEcCcEEEEEEcccCCCCC
Q psy17205 19 ETRGRRHTLIFFFHFAFCRPQVIWYKETLK-------L---DT------------TERRIMETRGRRHTLVIRKVLFTDF 76 (106)
Q Consensus 19 ~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~-------l---~~------------~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (106)
+..|+++.|.|.... .....+.|++.... + .. ..++..........|.|.+++.+|+
T Consensus 3 v~~G~~vtL~C~~~~-~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 3 AELGQKVELKCEVLN-SSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred ccCCCeEEEEEEecC-CCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 457999999998866 44566889875311 1 00 1123332334566799999999999
Q ss_pred EeeEEEEEc
Q psy17205 77 GNYSCVAEN 85 (106)
Q Consensus 77 g~y~C~~~~ 85 (106)
|.|.|...+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998764
No 150
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.47 E-value=8.9e-06 Score=44.39 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=55.0
Q ss_pred CeEEeecCCeEEEEEEEe-ecCCCCeEEEeeCCEEc----------CC--CCCEE-EEEcCcEEEEEEcccCCCCCEeeE
Q psy17205 15 RRIIETRGRRHTLIFFFH-FAFCRPQVIWYKETLKL----------DT--TERRI-METRGRRHTLVIRKVLFTDFGNYS 80 (106)
Q Consensus 15 ~~~~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~~~l----------~~--~~~~~-~~~~~~~~~l~~~~~~~~~~g~y~ 80 (106)
..+.+.+|+++.|.|... + ...+.+.|++....+ .. ..|+. +........++|.++...|.|.|.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s-~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSS-FNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred EEEEEcCCCCEEEEEecCCC-CccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE
Confidence 356778999999999985 5 567899998863211 11 12333 222334567999999999999999
Q ss_pred EEEEc-CCC-cceEEEEEE
Q psy17205 81 CVAEN-SMG-KTRQYLELS 97 (106)
Q Consensus 81 C~~~~-~~~-~~~~~~~l~ 97 (106)
|.... +.| ..+...-|.
T Consensus 102 C~F~tfp~G~~~~gt~CLt 120 (189)
T PHA02987 102 CIFNTLLSKNNEKGVVCLN 120 (189)
T ss_pred EEEEecCCCCCceeEEEEE
Confidence 99875 345 444444333
No 151
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.46 E-value=6.9e-06 Score=40.79 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=28.8
Q ss_pred cEEEEEEcccCCCCCEeeEEEEEc-CCCcceEEEEEE
Q psy17205 62 RRHTLVIRKVLFTDFGNYSCVAEN-SMGKTRQYLELS 97 (106)
Q Consensus 62 ~~~~l~~~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~ 97 (106)
...+|+|.++..+|.|.|.|.+.+ +.|..++.+.|.
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~ 98 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLT 98 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEE
Confidence 356799999999999999999987 566666565554
No 152
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.45 E-value=2e-05 Score=39.86 Aligned_cols=75 Identities=17% Similarity=0.318 Sum_probs=48.2
Q ss_pred CCeEEEEEEEeecCC-------CCeEEEeeCC-----EE----cCCC----------CCEEEEE---cCcEEEEEEcccC
Q psy17205 22 GRRHTLIFFFHFAFC-------RPQVIWYKET-----LK----LDTT----------ERRIMET---RGRRHTLVIRKVL 72 (106)
Q Consensus 22 g~~~~~~c~~~~~~p-------~p~~~w~~~~-----~~----l~~~----------~~~~~~~---~~~~~~l~~~~~~ 72 (106)
|+++.|.|.... .| .+.+.|.+.. .. +... .|..+.. ..+..+|.|.++.
T Consensus 2 ~~~v~LpC~~~~-~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 2 SSSVLLPCVFTL-PPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCcEEEeeEEEc-CccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 678899998653 22 4688897641 10 1001 1222222 1246789999999
Q ss_pred CCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 73 FTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 73 ~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
.+|.|.|.|.+..........+.|.
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~ 105 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLE 105 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEE
Confidence 9999999999998665555556555
No 153
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.45 E-value=2.1e-05 Score=40.12 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=29.7
Q ss_pred cEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 62 RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 62 ~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
+..+|.|.++...|.|.|.|.+..........+.|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~ 112 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLD 112 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEE
Confidence 467899999999999999999998766666665555
No 154
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.43 E-value=7.4e-06 Score=40.42 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=48.0
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEeeCCE-----Ec--------CCCCCEEEEE--cCcEEEEEEcccCCCCCEeeEE
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETL-----KL--------DTTERRIMET--RGRRHTLVIRKVLFTDFGNYSC 81 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~-----~l--------~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C 81 (106)
+.+..|+++.|.|..........+.|++... .+ ....++.+.. ......|.|.++..+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 3567899999999876512456788987641 11 0112343322 2345689999999999999999
Q ss_pred EEEcCC
Q psy17205 82 VAENSM 87 (106)
Q Consensus 82 ~~~~~~ 87 (106)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 887653
No 155
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.43 E-value=6.6e-06 Score=37.14 Aligned_cols=61 Identities=31% Similarity=0.391 Sum_probs=43.8
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEcCCCCCE----EEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205 26 TLIFFFHFAFCRPQVIWYKETLKLDTTERR----IMETRGRRHTLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 26 ~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~----~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
.+.|...+ .+...+.|++++......... ..........+.+..+...|.|.|.|.+.+..
T Consensus 2 ~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 2 TLTCLASG-PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred EEEEEecC-CCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 67899988 788999999987665443211 11111334578999999999999999988764
No 156
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.42 E-value=1e-05 Score=38.86 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=40.0
Q ss_pred EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE--cC---cEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET--RG---RRHTLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~--~~---~~~~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
+.|.|.+.+..|...+.|++++..+.......... .+ ....+.+......+...|.|.+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 57899998856778899999998875432111111 11 12245555444455668999998764
No 157
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.40 E-value=2.1e-05 Score=38.06 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=40.9
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc--C---cEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR--G---RRHTLVIRKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~--~---~~~~l~~~~~~~~~~g~y~C~~~~~~~ 88 (106)
++.+.+.|.+.++.|.|.+.|+.++..+........... + ....|.+..-...+...+.|.+.+...
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 779999998877689999999998866611100011110 1 122455554444456689999988643
No 158
>PHA03376 BARF1; Provisional
Probab=98.40 E-value=1.3e-05 Score=43.90 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=48.8
Q ss_pred eEEeecCCeEEEEEEEee--cCCCCeEEEeeCCE----E-c--CC----------CCCEEEEEcCcEEEEEEcccCCCCC
Q psy17205 16 RIIETRGRRHTLIFFFHF--AFCRPQVIWYKETL----K-L--DT----------TERRIMETRGRRHTLVIRKVLFTDF 76 (106)
Q Consensus 16 ~~~~~~g~~~~~~c~~~~--~~p~p~~~w~~~~~----~-l--~~----------~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (106)
.+....|+++.|.|.... -.....+.|++.+. . + .. ..+..+....+..+|.|.++..+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 466778999999997762 02455789999421 1 1 01 1122222334567899999999999
Q ss_pred EeeEEEEEcCCC
Q psy17205 77 GNYSCVAENSMG 88 (106)
Q Consensus 77 g~y~C~~~~~~~ 88 (106)
|+|.|.+.....
T Consensus 100 GtY~C~fQkge~ 111 (221)
T PHA03376 100 GNYLCRMKLGET 111 (221)
T ss_pred ceEEEEEEcCCC
Confidence 999999987543
No 159
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.39 E-value=2.7e-05 Score=38.68 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=30.4
Q ss_pred cEEEEEEcccCCCCCEeeEEEEEc-CCCcceEEEEEEE
Q psy17205 62 RRHTLVIRKVLFTDFGNYSCVAEN-SMGKTRQYLELSG 98 (106)
Q Consensus 62 ~~~~l~~~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~~ 98 (106)
.+.++.|.++...|.|.|.|.+.+ +.|..++.+.|.+
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 356899999999999999999998 5777676666653
No 160
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.37 E-value=9.4e-06 Score=40.77 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=44.7
Q ss_pred EeecCCeEEEEEEEeecCC-CCeEEEeeCCEE--------c---CC-----------CCCEEEE--EcCcEEEEEEcccC
Q psy17205 18 IETRGRRHTLIFFFHFAFC-RPQVIWYKETLK--------L---DT-----------TERRIME--TRGRRHTLVIRKVL 72 (106)
Q Consensus 18 ~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~~~--------l---~~-----------~~~~~~~--~~~~~~~l~~~~~~ 72 (106)
.+..|++++|.|.... .. ...+.||+.... + .. ..++... .......|+|.+++
T Consensus 2 ~v~~G~~vtL~C~~~~-~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKG-ISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EEcCCCCEEEEEEEec-CCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 4668999999999865 33 457899875321 0 00 1233221 12335579999999
Q ss_pred CCCCEeeEEEEEc
Q psy17205 73 FTDFGNYSCVAEN 85 (106)
Q Consensus 73 ~~~~g~y~C~~~~ 85 (106)
.+|.|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999764
No 161
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.35 E-value=1.1e-05 Score=39.81 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=46.2
Q ss_pred CCeEEEEEEEeecCCC-CeEEEeeCCE----Ec----C-CC--------CCEEEE-EcCcEEEEEEcccCCCCCEeeEEE
Q psy17205 22 GRRHTLIFFFHFAFCR-PQVIWYKETL----KL----D-TT--------ERRIME-TRGRRHTLVIRKVLFTDFGNYSCV 82 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~-p~~~w~~~~~----~l----~-~~--------~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~ 82 (106)
|++++|.|.... ... -.+.|++... .+ . .+ .+.... ......+|.|.++..+|.|.|.|.
T Consensus 1 G~~vtL~C~~~~-~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTL-PEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCC-CCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEE
Confidence 678999998665 332 2688987421 10 0 00 111111 112456799999999999999999
Q ss_pred EEc-CCCcceEEEEEE
Q psy17205 83 AEN-SMGKTRQYLELS 97 (106)
Q Consensus 83 ~~~-~~~~~~~~~~l~ 97 (106)
+.. +.|.....+-|+
T Consensus 80 ~~~~p~g~~~~~~~L~ 95 (97)
T cd05846 80 FNTFPDGSKSGTMCLT 95 (97)
T ss_pred EEeCCCCCeeeEEEEE
Confidence 875 455555555544
No 162
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.34 E-value=2.7e-05 Score=38.42 Aligned_cols=76 Identities=22% Similarity=0.281 Sum_probs=47.9
Q ss_pred CeEEEEEEEeecCCCCeEEEeeCC----EEcC------------C-CCCEEEE-EcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205 23 RRHTLIFFFHFAFCRPQVIWYKET----LKLD------------T-TERRIME-TRGRRHTLVIRKVLFTDFGNYSCVAE 84 (106)
Q Consensus 23 ~~~~~~c~~~~~~p~p~~~w~~~~----~~l~------------~-~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~ 84 (106)
+++.|.|.........++.|.+.. ..+. . ..|..+. ....+.++.|.++...|.|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 357888887641233478887642 1111 0 1132221 12335689999999999999999986
Q ss_pred c-CCCcceEEEEEEE
Q psy17205 85 N-SMGKTRQYLELSG 98 (106)
Q Consensus 85 ~-~~~~~~~~~~l~~ 98 (106)
+ +.|...+...|.+
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 5 5778777776653
No 163
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.30 E-value=2.5e-05 Score=38.26 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=39.4
Q ss_pred CCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCC---CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205 22 GRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTE---RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~---~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
++...|.|.+.+ +.++ .+.|.+++..+.... .......+.........+...+...|.|.+.+..
T Consensus 14 ~~~~~L~C~a~g-F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATG-FYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEE-EeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 678999999999 7544 789999986433221 1111112222222333344457789999998753
No 164
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.25 E-value=4e-05 Score=40.27 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=45.0
Q ss_pred cceeeccCCeEEeecCCeEEEEEEEeecC-CC-CeEEEeeCCEEcCC----CCCEE-----EEEcCc---EEEEEEcccC
Q psy17205 7 TLKLDTTERRIIETRGRRHTLIFFFHFAF-CR-PQVIWYKETLKLDT----TERRI-----METRGR---RHTLVIRKVL 72 (106)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~-p~-p~~~w~~~~~~l~~----~~~~~-----~~~~~~---~~~l~~~~~~ 72 (106)
+|.+...........|+.+.|.|.+.+ . |. ..+.|++++..... ..... ....+. ...|.+....
T Consensus 38 ~P~v~~~~~~~~~~~~~~~~L~C~a~g-~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~ 116 (139)
T cd05771 38 PPRVRLSLEKLVSMIEEPQTLICHIAG-YYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGT 116 (139)
T ss_pred CCceEEeCCCceeecCCcEEEEEEECC-CCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCc
Confidence 444443333334446788999999998 6 43 48999998743211 01111 111121 1245555444
Q ss_pred CCCCEeeEEEEEcCC
Q psy17205 73 FTDFGNYSCVAENSM 87 (106)
Q Consensus 73 ~~~~g~y~C~~~~~~ 87 (106)
..+...|.|.+.+..
T Consensus 117 ~~~g~~ytC~V~H~~ 131 (139)
T cd05771 117 EDAGATYTCRVSHVS 131 (139)
T ss_pred cCCCCEEEEEEEcCC
Confidence 445668999998753
No 165
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.22 E-value=5.1e-05 Score=38.80 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=47.4
Q ss_pred CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCCE-----Ec---CC-----------CCCEEEEEc--CcEEEEEEcc
Q psy17205 14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKETL-----KL---DT-----------TERRIMETR--GRRHTLVIRK 70 (106)
Q Consensus 14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~~-----~l---~~-----------~~~~~~~~~--~~~~~l~~~~ 70 (106)
+..+.+..|++++|.|.... .. ...+.||+... .+ .. ..++..... .....|.|.+
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~-~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASG-FTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeC-CCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 34567789999999998765 33 45688987431 11 00 123433322 2345799999
Q ss_pred cCCCCCEeeEEEEEc
Q psy17205 71 VLFTDFGNYSCVAEN 85 (106)
Q Consensus 71 ~~~~~~g~y~C~~~~ 85 (106)
+..+|+|.|.|....
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998864
No 166
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.11 E-value=5.4e-05 Score=35.66 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.4
Q ss_pred CcEEEEEEcccCCCCCEeeEEE
Q psy17205 61 GRRHTLVIRKVLFTDFGNYSCV 82 (106)
Q Consensus 61 ~~~~~l~~~~~~~~~~g~y~C~ 82 (106)
.....|.|.+++..|.|.|.|.
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEc
Confidence 4567899999999999999995
No 167
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.10 E-value=0.00015 Score=35.78 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=27.6
Q ss_pred cEEEEEEcccCCCCCEeeEEEEEc-CCCcceEEEEE
Q psy17205 62 RRHTLVIRKVLFTDFGNYSCVAEN-SMGKTRQYLEL 96 (106)
Q Consensus 62 ~~~~l~~~~~~~~~~g~y~C~~~~-~~~~~~~~~~l 96 (106)
.+.++.|.++...|.|.|.|.+.. +.|...+.+.+
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 346899999999999999999976 46666665544
No 168
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.92 E-value=0.0004 Score=34.14 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=39.4
Q ss_pred cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCC---CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205 21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTE---RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~---~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
.++...|.|.+.+ +.++ .+.|++++..+.... .......+.........+...+...|.|.+....
T Consensus 13 ~~~~~~L~C~~~g-FyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 13 LSHPHLLVCHVWG-FYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred CCCCeEEEEEEee-ecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 5788999999999 6444 678999998765531 1111111222222222333345568999998753
No 169
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.88 E-value=0.00057 Score=34.67 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=40.1
Q ss_pred eecCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCEEE-EEcC-c---EEEEEEcccCCCCCE-eeEEEEEcCC
Q psy17205 19 ETRGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERRIM-ETRG-R---RHTLVIRKVLFTDFG-NYSCVAENSM 87 (106)
Q Consensus 19 ~~~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~~~-~~~~-~---~~~l~~~~~~~~~~g-~y~C~~~~~~ 87 (106)
...|+.++|.|.+.+ +-+ ..+.|++|+..+........ ...+ . ...|.+... ..|.+ .|.|.+....
T Consensus 18 ~~~g~~~tL~C~a~g-F~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 18 ANPGQSVNFTCSAHG-FSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRT 92 (111)
T ss_pred cCCCCCEEEEEEEee-EeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCC
Confidence 446788999999998 543 48899999988764321111 1111 1 122444432 23333 5999998754
No 170
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.84 E-value=6.6e-05 Score=39.43 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=29.9
Q ss_pred EEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205 65 TLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYP 101 (106)
Q Consensus 65 ~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~~~ 101 (106)
+|+|.+++..|.|.|.|.+.+..+.....+.|.+..+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~ 38 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEP 38 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecC
Confidence 6899999999999999999987777766666664443
No 171
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.77 E-value=0.00053 Score=33.82 Aligned_cols=73 Identities=8% Similarity=-0.052 Sum_probs=40.4
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 95 (106)
-....+.|.+.++.|.+.+.|+++...... ........+. ...|.+......+...+.|.+.+..-.....+.
T Consensus 15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~ 90 (95)
T cd07703 15 IPVPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLP 90 (95)
T ss_pred CccEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence 345778898886589999999987211100 0000111111 223555444444556899999987544444333
No 172
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.68 E-value=0.0012 Score=32.52 Aligned_cols=67 Identities=6% Similarity=-0.012 Sum_probs=38.3
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEE--EEcCc---EEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIM--ETRGR---RHTLVIRKVLFTDFGNYSCVAENSMGKTR 91 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~--~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~~~~ 91 (106)
.......|.+.++.|.+.|.|+++. ........ ..++. ...|.+......+...|.|.+.+..-...
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~ 86 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP 86 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 4456788999765899999999871 11100111 11111 22455544444455689999998754433
No 173
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.67 E-value=0.00097 Score=31.27 Aligned_cols=61 Identities=15% Similarity=0.304 Sum_probs=36.2
Q ss_pred EEEEEEEeecC-CC-CeEEEeeCCEEcCCCCC---EEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcC
Q psy17205 25 HTLIFFFHFAF-CR-PQVIWYKETLKLDTTER---RIMETRGR---RHTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 25 ~~~~c~~~~~~-p~-p~~~w~~~~~~l~~~~~---~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
+.|.|.+.+ . |. ..+.|++++..+..+.. ......+. ...|.+......+...|.|.+...
T Consensus 2 ~~L~C~a~g-f~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSG-FYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEe-EeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 578999998 6 44 48899999986443211 11111121 123455444445667899998764
No 174
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.62 E-value=0.0014 Score=32.27 Aligned_cols=62 Identities=24% Similarity=0.330 Sum_probs=36.8
Q ss_pred cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCE---EEEEcCcEE---EEEEcccCCCCCEeeEEEEEcC
Q psy17205 21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERR---IMETRGRRH---TLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~---~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
.++...|.|.+.+ +.+. .+.|.++|..+..+... .....+... .|.+. ..+...|.|.+...
T Consensus 14 ~~~~~tL~C~a~g-FyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDN-FFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEE-EECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 3555799999999 7544 67899999876543111 111112121 23333 33455899998864
No 175
>PHA02633 hypothetical protein; Provisional
Probab=97.60 E-value=0.00037 Score=31.33 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=28.7
Q ss_pred EEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEEe
Q psy17205 65 TLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGK 99 (106)
Q Consensus 65 ~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~ 99 (106)
.|.+.++..+|+|.|.|...|..-+...++.+++.
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 58889999999999999999876666667777643
No 176
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.56 E-value=0.0017 Score=31.04 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=39.3
Q ss_pred cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEEE---EcCcEE---EEEEcccCCCCCEeeEEEEEcCC
Q psy17205 21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIME---TRGRRH---TLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~~---~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
.++.+.|.|.+.+ +.+. .+.|++++..+......... ..+... .+.+. ..+...|.|.+....
T Consensus 7 ~~~~~~L~C~v~~-f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSG-FYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEE-EBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEEE-EECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 4788999999998 5433 68899999887654322111 122222 23333 344558999988654
No 177
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.56 E-value=0.0019 Score=31.72 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=39.0
Q ss_pred cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCE---EEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205 21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERR---IMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
.|....|.|.+.+ +.++ .+.|.++|..+. +... .....+.........+...+...|.|.+...
T Consensus 14 ~g~~~~L~C~a~g-FyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 14 NGKPNVLNCYVTG-FHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CCCceEEEEEEEE-EeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 4556689999999 7554 678999998876 3211 1111222222223333445666899999864
No 178
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.40 E-value=0.0013 Score=30.05 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=34.2
Q ss_pred eecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205 19 ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 19 ~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
...|..+++.|+... .. +.|.+++..+..... .+.+.+-. ++.|.|.|.+.+.
T Consensus 4 sisGTtVtlTCP~~~-~~---i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 4 SISGTTVTVTCPLSG-DD---IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEeccEEEEECCCCC-CC---ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 346889999998655 22 899999855554221 12222222 6789999988643
No 179
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.39 E-value=0.0035 Score=31.17 Aligned_cols=66 Identities=14% Similarity=0.252 Sum_probs=39.3
Q ss_pred cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCC---CEEEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCC
Q psy17205 21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTE---RRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~---~~~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
.++.+.|.|.+.+ ..+ ..+.|++++..+..+. ......++... .|.+......+...|.|.+....
T Consensus 16 ~~~~~~L~C~~~g-fyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 16 KSGKATLVCLIND-FYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred cCCCcEEEEEEEe-EECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 4677899999998 543 4789999998875321 11111122222 34443333334568999988653
No 180
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.33 E-value=0.002 Score=32.19 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=38.0
Q ss_pred cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEE--EEE----cCcE---EEEEEcccCCCCCEeeEEEEEcC
Q psy17205 21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRI--MET----RGRR---HTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~--~~~----~~~~---~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
.+..++|.|.+.+ +.++ .+.|++++..+....... ... .+.. ..|.+..-...+...|.|.+...
T Consensus 15 ~~~~~tL~C~a~g-FyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 15 LQETATLTCLVKG-FSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred cCCceEEEEEEee-EeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 4678999999999 7554 568999998765321111 000 1211 13444332223445799998865
No 181
>KOG3515|consensus
Probab=97.25 E-value=0.00067 Score=44.56 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=49.1
Q ss_pred ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205 6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85 (106)
Q Consensus 6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 85 (106)
..+..........+..|+.+.|.|.+.+..|...++|++.+..+. . +.... ...+|......+...+.|.|.+.|
T Consensus 6 ~~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~-~~~~~---~~~~~~~~~~~~~~~~~~~c~a~n 80 (741)
T KOG3515|consen 6 NVPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-G-RYATI---ADPTLVTTGDVRDTVAELNCRAFN 80 (741)
T ss_pred CCccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc-c-ccccc---cCCceeeecchhhhhhhhhhhhcc
Confidence 334444334444778999999999999834567899999876544 1 11111 122456666666666778888777
Q ss_pred CCC
Q psy17205 86 SMG 88 (106)
Q Consensus 86 ~~~ 88 (106)
..+
T Consensus 81 s~~ 83 (741)
T KOG3515|consen 81 SVG 83 (741)
T ss_pred ccc
Confidence 633
No 182
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.07 E-value=0.0094 Score=29.34 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=38.3
Q ss_pred cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCC---CEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205 21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTE---RRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~---~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
....+.|.|.+.+ +.+ ..+.|.+++..+.... .......+. ...|.+..-...+...|.|.+....
T Consensus 13 ~~~~~~L~C~a~g-FyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 13 TSETIQLLCLISG-YTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCCCEEEEEEEEe-EECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 3456899999998 644 4779999998763321 111111121 1234444333335568999998653
No 183
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.91 E-value=0.015 Score=28.93 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=38.9
Q ss_pred eecCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCEEE-E--E-cCcEEEEEEcccCCCCCE-eeEEEEEcC
Q psy17205 19 ETRGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERRIM-E--T-RGRRHTLVIRKVLFTDFG-NYSCVAENS 86 (106)
Q Consensus 19 ~~~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~~~-~--~-~~~~~~l~~~~~~~~~~g-~y~C~~~~~ 86 (106)
+..|..+++.|.+.+..|. ..+.|++++..+........ . . ......+++... +.|.| +|.|.+.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 4689999999999873444 46889887665554321110 0 0 011122333332 55666 899988743
No 184
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.66 E-value=0.028 Score=28.76 Aligned_cols=70 Identities=11% Similarity=0.236 Sum_probs=41.0
Q ss_pred cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCC---EEEEEc-Cc---EEEEEEcccCCCC-CEeeEEEEEcCCCcc
Q psy17205 21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTER---RIMETR-GR---RHTLVIRKVLFTD-FGNYSCVAENSMGKT 90 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~---~~~~~~-~~---~~~l~~~~~~~~~-~g~y~C~~~~~~~~~ 90 (106)
.+..+.|.|.+.+ +.+. .+.|.+++..+..+.. .....+ +. ...|.+...+..+ ...|.|.+.......
T Consensus 17 ~~~~~tL~Cla~g-FyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~ 95 (115)
T cd05769 17 NKRKATLVCLATG-FYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTD 95 (115)
T ss_pred cCCCcEEEEEEEe-EeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence 4567899999998 6444 7899999987764321 111111 11 2234555433323 457999998654333
Q ss_pred e
Q psy17205 91 R 91 (106)
Q Consensus 91 ~ 91 (106)
.
T Consensus 96 ~ 96 (115)
T cd05769 96 T 96 (115)
T ss_pred c
Confidence 3
No 185
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.59 E-value=0.028 Score=27.81 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=23.3
Q ss_pred cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCC
Q psy17205 21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTT 52 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~ 52 (106)
.+...+|.|.+.+ +.++ .+.|.++|..+..+
T Consensus 15 ~~~~~tL~C~a~g-FyP~~I~v~W~kng~~~~~~ 47 (96)
T cd07697 15 KQGQGIYLCLLEN-FFPDVIQVHWREGNSPSILG 47 (96)
T ss_pred cCCCEEEEEEEEE-EeCCCeEEEEEECCEECcCC
Confidence 3556899999999 6554 56899999876543
No 186
>KOG1480|consensus
Probab=96.52 E-value=0.00064 Score=44.65 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=54.4
Q ss_pred cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205 13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91 (106)
Q Consensus 13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~ 91 (106)
.+....+..+..+++.|...-+.|...+.|++++..+++..++.... .+.+.+..+...|.|+|+|.+.|..+...
T Consensus 135 ~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~---d~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 135 SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS---DHNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred ChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhh---cCCccccchhhhhcccceeeeehhhcccc
Confidence 33344555677778887665426777889999998777754433322 33688889999999999999999876654
No 187
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.43 E-value=0.037 Score=27.35 Aligned_cols=68 Identities=9% Similarity=0.097 Sum_probs=37.0
Q ss_pred eecCCeEEEEEEEeecC-CCC--eEEEeeCCEEc-CCC-CCEEEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCC
Q psy17205 19 ETRGRRHTLIFFFHFAF-CRP--QVIWYKETLKL-DTT-ERRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 19 ~~~g~~~~~~c~~~~~~-p~p--~~~w~~~~~~l-~~~-~~~~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
+..++..+|.|.+.+ + .++ .+.|.+++... ... .......++... .+.+..-...+.-.|.|.+....
T Consensus 11 l~~~~~~tLtC~v~g-f~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 11 LLLTKSVKLTCLVTN-LTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred hccCCCeEEEEEEeC-CCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 345788999999999 8 333 67899986422 111 011111112122 23333322223447999988753
No 188
>PHA02982 hypothetical protein; Provisional
Probab=96.41 E-value=0.02 Score=32.32 Aligned_cols=72 Identities=18% Similarity=0.322 Sum_probs=47.3
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEeeCCE-EcC----------C--------CCCEEEEEcCcEEEEEEcccCCCCCE
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETL-KLD----------T--------TERRIMETRGRRHTLVIRKVLFTDFG 77 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~-~l~----------~--------~~~~~~~~~~~~~~l~~~~~~~~~~g 77 (106)
+....++.+.|.|....+.-..+..|..+.. .+. . .........+..++|++.+++.+..|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 5667799999999865422334567876431 111 0 01122333456778999999999999
Q ss_pred eeEEEEEcCCC
Q psy17205 78 NYSCVAENSMG 88 (106)
Q Consensus 78 ~y~C~~~~~~~ 88 (106)
-|.|.+....+
T Consensus 114 CYtc~~ks~~~ 124 (251)
T PHA02982 114 CFTCEAKDAEG 124 (251)
T ss_pred ceEEEEecCCC
Confidence 99999987543
No 189
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.33 E-value=0.051 Score=27.85 Aligned_cols=68 Identities=9% Similarity=0.116 Sum_probs=43.2
Q ss_pred eEEeecCCeEEEEEEEeecCCC---CeEEEeeCCE-E-------------cC-CCCCEEEE--EcCcEEEEEEcccCCCC
Q psy17205 16 RIIETRGRRHTLIFFFHFAFCR---PQVIWYKETL-K-------------LD-TTERRIME--TRGRRHTLVIRKVLFTD 75 (106)
Q Consensus 16 ~~~~~~g~~~~~~c~~~~~~p~---p~~~w~~~~~-~-------------l~-~~~~~~~~--~~~~~~~l~~~~~~~~~ 75 (106)
...+..+..+.|.|...+ .-. -.+.|+|... . .. ...++... ...+...|.+.+++.+|
T Consensus 7 ~~lv~p~~sv~LsC~~sg-~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 7 PVLASSNGAASLVCEYTY-NGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CeEEcCCCCEEEEEEecC-CccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 355667888999998866 322 3566765320 1 00 11222222 23456689999999999
Q ss_pred CEeeEEEEE
Q psy17205 76 FGNYSCVAE 84 (106)
Q Consensus 76 ~g~y~C~~~ 84 (106)
.+.|.|...
T Consensus 86 Ta~Y~Ca~e 94 (115)
T cd05721 86 TDIYFCKIE 94 (115)
T ss_pred CeEEEEEee
Confidence 999999654
No 190
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.22 E-value=0.051 Score=26.80 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=36.1
Q ss_pred cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCC---EEEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCC
Q psy17205 21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTER---RIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~---~~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
.++.+.|.|.+.+ +.+. .+.|.+++.. ..+.. ......+... .|.+....-.....|.|.+....
T Consensus 15 ~~~~~~L~C~a~g-FyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATG-FLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEee-EECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 3556899999999 6543 6789999986 32210 0111112222 23433322112456999988753
No 191
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.13 E-value=0.06 Score=26.74 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=40.8
Q ss_pred EEeecCCeEEE-EEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205 17 IIETRGRRHTL-IFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 17 ~~~~~g~~~~~-~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~ 88 (106)
..+..|+.+.+ .|.+.++.|.+.+.|+.+..... ........++. ...+.+......|...+.|.+....-
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 45567777777 89887768999999997632111 10111111111 11344443444466689999987643
No 192
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.08 E-value=0.021 Score=33.25 Aligned_cols=49 Identities=16% Similarity=0.349 Sum_probs=35.6
Q ss_pred CCCCeEEEeeCC-EEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205 35 FCRPQVIWYKET-LKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 35 ~p~p~~~w~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
...|...|...+ ..+.......+...+ .|.+.+....++|.|.|.....
T Consensus 10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred cCCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence 357889998654 445544455555444 6999999999999999998754
No 193
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.84 E-value=0.1 Score=27.37 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=42.7
Q ss_pred EeecCCeEEEEEEEeecC-----CCCeEEEeeCCEEcC---CCCCEEEE----------EcCcEEEEEEcccCCCCCEee
Q psy17205 18 IETRGRRHTLIFFFHFAF-----CRPQVIWYKETLKLD---TTERRIME----------TRGRRHTLVIRKVLFTDFGNY 79 (106)
Q Consensus 18 ~~~~g~~~~~~c~~~~~~-----p~p~~~w~~~~~~l~---~~~~~~~~----------~~~~~~~l~~~~~~~~~~g~y 79 (106)
.....+++.+.|.... . ....+.|..++..+- ...+.... ...+..+|.+...+.- .|+|
T Consensus 23 ~t~CN~tV~IPC~v~n-~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnY 100 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNN-LEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNY 100 (130)
T ss_dssp E-TT-SEEEE--BBSS----SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEE
T ss_pred EEecCCCEEEEeEecc-ccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccce
Confidence 3445889999998854 2 234689988876432 11111100 0123445777765544 7999
Q ss_pred EEEEEcCCCcceEEEEEE
Q psy17205 80 SCVAENSMGKTRQYLELS 97 (106)
Q Consensus 80 ~C~~~~~~~~~~~~~~l~ 97 (106)
.|-+.....+....+.|.
T Consensus 101 TCeVt~~~~ege~~i~Lk 118 (130)
T PF08204_consen 101 TCEVTELSREGETTIELK 118 (130)
T ss_dssp EEEEEETTEEEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEE
Confidence 999998776666666665
No 194
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.46 E-value=0.13 Score=25.65 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=36.2
Q ss_pred cCCeEEEEEEEeecCC-C--CeEEEeeCCEEcCCC-CCEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcC
Q psy17205 21 RGRRHTLIFFFHFAFC-R--PQVIWYKETLKLDTT-ERRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 21 ~g~~~~~~c~~~~~~p-~--p~~~w~~~~~~l~~~-~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
.+..+.+.|.+.+ +. + ..+.|.+++.. ... .......++. ...|.+..-.-.....|.|.+...
T Consensus 18 ~~~~atLtClV~~-f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 18 LGSSASLTCTLSG-LRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP 88 (99)
T ss_pred cCCccEEEEEEec-cCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence 5778999999999 66 2 37889998754 110 0000111121 223444433333445699998865
No 195
>PHA03042 CD47-like protein; Provisional
Probab=94.54 E-value=0.53 Score=27.91 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=44.5
Q ss_pred eecCCeEEEEEEEeecC-----CCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205 19 ETRGRRHTLIFFFHFAF-----CRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93 (106)
Q Consensus 19 ~~~g~~~~~~c~~~~~~-----p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~ 93 (106)
....+++.+.|.... . -.-++.|..++..+-.... ...+++++...+. -.|+|+|-+.+.+.+....
T Consensus 28 T~CN~TV~IpC~v~n-~~~~ni~~~~V~Wkf~~~~If~~n~------tn~aSL~~~f~~~-l~GNYTCEv~~l~n~gk~~ 99 (286)
T PHA03042 28 TTCNKTIVIVCNLNL-LIYYNISNIHINWKFNNKVIFKKNN------TNTSSLKFNFSKN-LSGNYTCEAINKFNKIKNT 99 (286)
T ss_pred EecCceEEEEeecCC-hhhcCccceEEEEEeCCeeEEEecC------CcceEEEEecccc-CCCceeEEEeecccCccEE
Confidence 346888999998866 3 2457999888754322111 1123566555443 4699999999876655555
Q ss_pred EEEE
Q psy17205 94 LELS 97 (106)
Q Consensus 94 ~~l~ 97 (106)
+.++
T Consensus 100 IeLk 103 (286)
T PHA03042 100 IELQ 103 (286)
T ss_pred EEEE
Confidence 5444
No 196
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.42 E-value=0.22 Score=23.07 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=29.1
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 85 (106)
...+.+.|... -.+.|++ |..+.... ...+-+-.....-.|.|.|...+
T Consensus 6 ~~~V~L~C~~~-----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA-----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC-----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 45678889542 3589999 44333211 11344444445567999998766
No 197
>KOG4597|consensus
Probab=93.29 E-value=0.26 Score=31.51 Aligned_cols=79 Identities=16% Similarity=0.039 Sum_probs=53.4
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEee---CCEE-cCCCCCEEEEE--cCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYK---ETLK-LDTTERRIMET--RGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~---~~~~-l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 90 (106)
..+-++++..+.|-..| .+.+.+.|.+ +... +... ...... -.....|.|-+....|.|-|.|.+.+..|..
T Consensus 206 w~vg~wetcS~tCg~~G-~q~r~V~c~qv~anr~~vv~~~-nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~ 283 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGVQG-RQYRVVTCEQVFANRENVVMRP-NQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL 283 (560)
T ss_pred hhcccchhhcccccccC-CcCceeeeehhhccccceeecC-ccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence 44557888899999999 9999999953 2211 1111 000000 0123358888888999999999999999888
Q ss_pred eEEEEEE
Q psy17205 91 RQYLELS 97 (106)
Q Consensus 91 ~~~~~l~ 97 (106)
+..+.+.
T Consensus 284 ~rdv~c~ 290 (560)
T KOG4597|consen 284 RRDVPCS 290 (560)
T ss_pred eccceee
Confidence 8776655
No 198
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=92.63 E-value=0.64 Score=22.72 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=39.8
Q ss_pred eEEeecCCeEEEEEEEeecC-----CCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205 16 RIIETRGRRHTLIFFFHFAF-----CRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA 83 (106)
Q Consensus 16 ~~~~~~g~~~~~~c~~~~~~-----p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~ 83 (106)
...+..|+.++..|.... . ....+.|..++..++.. ++...... ....++.+......-.|-|..
T Consensus 12 ~pvv~lGS~vtasC~l~~-~c~~~~~a~~I~Wkln~~~iP~~-qy~~in~~-~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQ-NCSHSVNASQIVWKLNGEKIPGS-QYRVINDT-VSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SSEEETTS-EEEEEEE-C-CCHCT-STTCEEEECSSCESTCG-CEEEESTT-EEEEEESS--SSEEEEEEEEE
T ss_pred CCEEeCCCCEEEEEEEEC-CCCCCcccceEEEEECCEECChh-HcceeCCe-EEEEEEccCCCCCceEEEEEE
Confidence 345679999999998875 3 34578999888755554 44443333 356777776655545566653
No 199
>KOG3515|consensus
Probab=92.30 E-value=0.9 Score=30.91 Aligned_cols=70 Identities=19% Similarity=0.131 Sum_probs=43.9
Q ss_pred EEeecCCeEEEEEEEe-ecCCCCeEEEeeCCEEcCCCC--CEEEE---Ec---CcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205 17 IIETRGRRHTLIFFFH-FAFCRPQVIWYKETLKLDTTE--RRIME---TR---GRRHTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~~~l~~~~--~~~~~---~~---~~~~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
.....+..+++.|... ++.|.+.+.|..+........ ..... .. .....+++......+.|+|.|.+.+.
T Consensus 107 ~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 107 IFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR 185 (741)
T ss_pred hhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence 4455678889999544 336778999998875543221 01000 00 11234667777788999999999874
No 200
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=89.10 E-value=3.8 Score=25.39 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=17.1
Q ss_pred eEEEEEEEeecCCCC--eEEEeeC
Q psy17205 24 RHTLIFFFHFAFCRP--QVIWYKE 45 (106)
Q Consensus 24 ~~~~~c~~~~~~p~p--~~~w~~~ 45 (106)
.+.|.|.+.| +.+. .+.|.++
T Consensus 216 ~~tL~C~A~G-FYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDS-HYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEe-EeCCccEEEEEec
Confidence 4799999999 7655 5679998
No 201
>PHA03052 Hypothetical protein; Provisional
Probab=87.49 E-value=1.9 Score=19.99 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=26.6
Q ss_pred CeEEeecCCeEEEEEEEeecC--CCCeEEEeeCCEEc
Q psy17205 15 RRIIETRGRRHTLIFFFHFAF--CRPQVIWYKETLKL 49 (106)
Q Consensus 15 ~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~~~l 49 (106)
..+.+..|+++.+.|.+.-+. ..+.+.|..|+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 557788999999999997512 23567888888766
No 202
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=84.73 E-value=3.8 Score=20.90 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=25.8
Q ss_pred EEEEEEcccCCCCCEeeEEEEEcCCCcceE-EEEEE
Q psy17205 63 RHTLVIRKVLFTDFGNYSCVAENSMGKTRQ-YLELS 97 (106)
Q Consensus 63 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~-~~~l~ 97 (106)
+.+|.|..++..|+|.|..-+.+..|.... .+.+.
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs 105 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS 105 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence 447999999999999999999888777643 45544
No 203
>PHA03376 BARF1; Provisional
Probab=83.48 E-value=1.1 Score=25.35 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=20.1
Q ss_pred CCeEEEEEEEeecCCCCeEEEeeCCE
Q psy17205 22 GRRHTLIFFFHFAFCRPQVIWYKETL 47 (106)
Q Consensus 22 g~~~~~~c~~~~~~p~p~~~w~~~~~ 47 (106)
.+...+.|...+ +|.|+++|..++.
T Consensus 139 ~~~~~i~C~sgg-fP~P~~~Wle~~~ 163 (221)
T PHA03376 139 FSVLTVTCTVNA-FPHPHVQWLMPEG 163 (221)
T ss_pred CCeeEEEEecCC-cCCchheeccccC
Confidence 556788999666 9999999987653
No 204
>PHA03282 envelope glycoprotein E; Provisional
Probab=74.42 E-value=15 Score=24.10 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=18.3
Q ss_pred EEEEcccCCCCCEeeEEEEEc
Q psy17205 65 TLVIRKVLFTDFGNYSCVAEN 85 (106)
Q Consensus 65 ~l~~~~~~~~~~g~y~C~~~~ 85 (106)
++.|.++..+|+|.|...+..
T Consensus 125 tl~l~~a~~~DsG~Y~L~~~~ 145 (540)
T PHA03282 125 TLVLREARETDSGMYVLSVSR 145 (540)
T ss_pred eEEEeeccccCCceEEEEecC
Confidence 699999999999999988643
No 205
>COG5475 Uncharacterized small protein [Function unknown]
Probab=74.29 E-value=6.6 Score=17.43 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=15.3
Q ss_pred CEeeEEEEEcCCCcceEEEE
Q psy17205 76 FGNYSCVAENSMGKTRQYLE 95 (106)
Q Consensus 76 ~g~y~C~~~~~~~~~~~~~~ 95 (106)
.|.|.|+..+..|..+..+.
T Consensus 28 ~Gmy~C~Wf~g~g~~~~~F~ 47 (60)
T COG5475 28 DGMYECRWFDGYGVKREAFH 47 (60)
T ss_pred CCeEEEEEecCCCccccccc
Confidence 38999999998886665443
No 206
>PHA03271 envelope glycoprotein C; Provisional
Probab=70.14 E-value=17 Score=23.57 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=25.6
Q ss_pred EeecCCeEEEEEEEeecCCCC---eEEEeeCCEEcCC
Q psy17205 18 IETRGRRHTLIFFFHFAFCRP---QVIWYKETLKLDT 51 (106)
Q Consensus 18 ~~~~g~~~~~~c~~~~~~p~p---~~~w~~~~~~l~~ 51 (106)
.++.|+...-.|.+.. .-+| .+.|+++|.....
T Consensus 256 PVL~Ge~YkAtC~vAn-YYPP~SvrlrWf~nG~~V~~ 291 (490)
T PHA03271 256 PVLSGENYKASCIVRH-FYPPGSVYVSWRQNGNIATP 291 (490)
T ss_pred ccccCCCceEEEEeee-ecCCCceEEEEEeCCccccC
Confidence 4568999999999987 5443 6889999877654
No 207
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=68.91 E-value=29 Score=22.48 Aligned_cols=36 Identities=6% Similarity=0.149 Sum_probs=25.3
Q ss_pred EEEEEcccCCCCCEeeEEEEEcCCCcce-EEEEEEEe
Q psy17205 64 HTLVIRKVLFTDFGNYSCVAENSMGKTR-QYLELSGK 99 (106)
Q Consensus 64 ~~l~~~~~~~~~~g~y~C~~~~~~~~~~-~~~~l~~~ 99 (106)
..+.+.++..+|.|.|.|+......+.. ..+.+.+.
T Consensus 81 Ysf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVm 117 (500)
T PHA02914 81 YSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKA 117 (500)
T ss_pred eEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEc
Confidence 4688888999999999999986544433 34444433
No 208
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=68.06 E-value=12 Score=17.96 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=19.0
Q ss_pred eEEEEEEEeecCCCCeEEEeeCCEEcC
Q psy17205 24 RHTLIFFFHFAFCRPQVIWYKETLKLD 50 (106)
Q Consensus 24 ~~~~~c~~~~~~p~p~~~w~~~~~~l~ 50 (106)
...+.+.+.+ . ...+.|+.++..+.
T Consensus 31 ~~~l~l~a~~-~-~~~~~W~vdg~~~g 55 (89)
T PF06832_consen 31 RQPLVLKAAG-G-RGPVYWFVDGEPLG 55 (89)
T ss_pred cceEEEEEeC-C-CCcEEEEECCEEcc
Confidence 5666777777 5 55899999998883
No 209
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=61.24 E-value=18 Score=17.35 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=14.4
Q ss_pred EEEcccCCCCCEeeEEEEE
Q psy17205 66 LVIRKVLFTDFGNYSCVAE 84 (106)
Q Consensus 66 l~~~~~~~~~~g~y~C~~~ 84 (106)
.........|.|.+.|.+.
T Consensus 45 ~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEESBTCGGSEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEc
Confidence 4445566689999999994
No 210
>PHA03240 envelope glycoprotein M; Provisional
Probab=54.97 E-value=42 Score=19.71 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=36.3
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEeeC--------CE---E---cCC--CCC----------EEEEEcCcEEEEEEcc
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYKE--------TL---K---LDT--TER----------RIMETRGRRHTLVIRK 70 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--------~~---~---l~~--~~~----------~~~~~~~~~~~l~~~~ 70 (106)
+....|.++.|.-.-.. .+.-.+.|++. +. . ... ..+ ..+...-.+.+|.|.+
T Consensus 33 vt~r~G~nVTLga~~~l-hpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 33 HTTREGDPLLLGGGHGL-GAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred cccccCCceeeCCcccC-CCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 56677888888644433 35668889871 11 1 111 000 0111112245788999
Q ss_pred cCCCCCEeeEE
Q psy17205 71 VLFTDFGNYSC 81 (106)
Q Consensus 71 ~~~~~~g~y~C 81 (106)
+..+|.|+|--
T Consensus 112 vn~sd~~nYcr 122 (258)
T PHA03240 112 LNLSDAGEYCR 122 (258)
T ss_pred EeecCcchhhh
Confidence 99999999953
No 211
>PHA03270 envelope glycoprotein C; Provisional
Probab=53.39 E-value=47 Score=21.75 Aligned_cols=33 Identities=6% Similarity=0.062 Sum_probs=25.5
Q ss_pred EeecCCeEEEEEEEeecCCCC---eEEEeeCCEEcCC
Q psy17205 18 IETRGRRHTLIFFFHFAFCRP---QVIWYKETLKLDT 51 (106)
Q Consensus 18 ~~~~g~~~~~~c~~~~~~p~p---~~~w~~~~~~l~~ 51 (106)
.++.|+...-.|.+.. +.++ .+.|++++..+..
T Consensus 230 PvL~Ge~Y~AtC~va~-YYPp~Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 230 AVLEGEPFGATCVAAN-YYPGDRAAFRWFEGGDEVFA 265 (466)
T ss_pred ccccCCCceEEEEeee-ecCCCceEEEEEeCCccccC
Confidence 4567899999999987 5443 6889999987754
No 212
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=53.35 E-value=21 Score=23.19 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=15.8
Q ss_pred EEEEcccCCCCCEeeEEEEEc
Q psy17205 65 TLVIRKVLFTDFGNYSCVAEN 85 (106)
Q Consensus 65 ~l~~~~~~~~~~g~y~C~~~~ 85 (106)
.|.+.++...++|.|.|++..
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEE
T ss_pred ceEecCCCcccCceEEEEEEE
Confidence 588999999999999999874
No 213
>KOG0613|consensus
Probab=46.90 E-value=8.7 Score=28.10 Aligned_cols=53 Identities=15% Similarity=-0.003 Sum_probs=30.0
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeE
Q psy17205 26 TLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYS 80 (106)
Q Consensus 26 ~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~ 80 (106)
.+.|.+ + .|.+...|+..+..+..+....+....-...+.+......+.|.|.
T Consensus 209 ~~v~s~-g-qp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~ 261 (1205)
T KOG0613|consen 209 RAVVSA-G-QPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYS 261 (1205)
T ss_pred EEEEec-C-CCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchH
Confidence 334444 5 6888999999988777654443332222223445555555555554
No 214
>PHA03269 envelope glycoprotein C; Provisional
Probab=43.28 E-value=1e+02 Score=20.79 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=26.0
Q ss_pred EEeecCCeEEEEEEEeecCCCC---eEEEeeCCEEcCC
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRP---QVIWYKETLKLDT 51 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p---~~~w~~~~~~l~~ 51 (106)
..++.|+...-.|.+.. ..++ .+.|++++..+..
T Consensus 337 ~PVL~Ge~YkAtC~vA~-YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 337 DPVLLGNPYAAYCKVNK-YYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred CccccCCCceEEEEeee-ecCCCceEEEEEeCCcccCc
Confidence 34668999999999987 5443 6889999877764
No 215
>KOG0613|consensus
Probab=42.05 E-value=30 Score=25.70 Aligned_cols=75 Identities=11% Similarity=-0.089 Sum_probs=51.3
Q ss_pred eEEeecCCeEEEEEEEeecCCCCe-EEEeeCCEEcCCCC--CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205 16 RIIETRGRRHTLIFFFHFAFCRPQ-VIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91 (106)
Q Consensus 16 ~~~~~~g~~~~~~c~~~~~~p~p~-~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~ 91 (106)
.+....+..+.+.|...+ .+.|. +.|+.++....... .+........+...+..+...+.+.|.|-+.|..|...
T Consensus 343 ~v~a~d~~~v~m~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~ 420 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSG-TQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQ 420 (1205)
T ss_pred eeccccCcceeecccccC-CcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccc
Confidence 456667778889999988 77776 88887764433322 22222333445677778888888899999999877644
No 216
>PHA03189 UL14 tegument protein; Provisional
Probab=41.27 E-value=89 Score=19.57 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=14.4
Q ss_pred ccCCCCCEeeEEEEEcCCC
Q psy17205 70 KVLFTDFGNYSCVAENSMG 88 (106)
Q Consensus 70 ~~~~~~~g~y~C~~~~~~~ 88 (106)
++..+.+|.|.|...|..+
T Consensus 139 ~v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETH 157 (348)
T ss_pred EEEecccceEEEEeccccc
Confidence 3445678999999998653
No 217
>KOG1026|consensus
Probab=40.54 E-value=21 Score=25.07 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=26.1
Q ss_pred EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcC
Q psy17205 17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLD 50 (106)
Q Consensus 17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~ 50 (106)
..+..+..+++.|...+ .+.|.+.|+.......
T Consensus 202 ~~v~~~~~~~~~c~~~~-~~vp~~~~~~~~~~~~ 234 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAG-IPVPCHYWFPNCLASS 234 (774)
T ss_pred hhhcccchheeeeeccc-CCCcceeeeccccccc
Confidence 44567888999999999 9999999987654433
No 218
>PF15096 G6B: G6B family
Probab=35.08 E-value=49 Score=18.95 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=11.1
Q ss_pred CCCCCEeeEEEEEc
Q psy17205 72 LFTDFGNYSCVAEN 85 (106)
Q Consensus 72 ~~~~~g~y~C~~~~ 85 (106)
...|+|+|.|....
T Consensus 82 s~GDSGTFfCkGr~ 95 (224)
T PF15096_consen 82 SAGDSGTFFCKGRQ 95 (224)
T ss_pred hcCCccceEecCcc
Confidence 46899999998554
No 219
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=34.68 E-value=87 Score=17.49 Aligned_cols=22 Identities=27% Similarity=0.058 Sum_probs=19.1
Q ss_pred EEEEcccCCCCCEeeEEEEEcC
Q psy17205 65 TLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 65 ~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
-|++.+....|+|.|.-+++-.
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred EEEeCCCCcccceEEEEEEEEC
Confidence 4899999999999999888754
No 220
>PHA03283 envelope glycoprotein E; Provisional
Probab=34.28 E-value=1.5e+02 Score=20.16 Aligned_cols=37 Identities=14% Similarity=0.024 Sum_probs=27.2
Q ss_pred EEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEEeC
Q psy17205 64 HTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKY 100 (106)
Q Consensus 64 ~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~~ 100 (106)
..+.|.++...+.|.|.-...+..+.....+.|+++.
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 4689999999999999999887655444455555433
No 221
>PHA03273 envelope glycoprotein C; Provisional
Probab=33.58 E-value=1.5e+02 Score=19.86 Aligned_cols=32 Identities=16% Similarity=0.388 Sum_probs=25.6
Q ss_pred EeecCCeEEEEEEEeecCCCC---eEEEeeCCEEcC
Q psy17205 18 IETRGRRHTLIFFFHFAFCRP---QVIWYKETLKLD 50 (106)
Q Consensus 18 ~~~~g~~~~~~c~~~~~~p~p---~~~w~~~~~~l~ 50 (106)
.++.|+...-.|.+.. .-++ .+.|++++..+.
T Consensus 246 PvL~Ge~y~A~C~aa~-YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 246 PSLKGENYRAVCVVAS-YFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred ccccCCCceEEEEeee-ecCCCceEEEEEeCCeecc
Confidence 4668999999999987 5443 688999998877
No 222
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=33.12 E-value=69 Score=15.90 Aligned_cols=83 Identities=7% Similarity=0.033 Sum_probs=45.6
Q ss_pred ceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205 8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
..+...+....+..|+.+.+.|...= +.| .+.|...-. +........=..+.+.++.. | ..-.|.+.-.
T Consensus 4 f~v~v~P~~~vV~~G~Sv~VNCStsC--~~p~~~GLET~L~------k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~ 73 (91)
T PF03921_consen 4 FEVRVSPEEPVVPPGGSVWVNCSTSC--PQPEKIGLETSLS------KTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCS 73 (91)
T ss_dssp S-EEEESSEEEEETTEEEEEEEEESS--SS-SEEEEESSSE------EEEEEEETTEEEEEEEEE-S-C-EEEEEEEEET
T ss_pred eEEEEECCccEECCCCCEEEEEcCCC--CCCCcceEEEecC------CcccCCCCcEEEEEEEcccc-C-CeEEEEEEcC
Confidence 34556677788999999999999853 444 334432211 11122222234577777775 4 4567877654
Q ss_pred CCcceEEEEEEEeC
Q psy17205 87 MGKTRQYLELSGKY 100 (106)
Q Consensus 87 ~~~~~~~~~l~~~~ 100 (106)
..+..+.+.|++--
T Consensus 74 g~Q~~~~~~ItVY~ 87 (91)
T PF03921_consen 74 GEQSSASANITVYK 87 (91)
T ss_dssp TEEEEEEEEEEEEB
T ss_pred CeEEEeEEeeEEeC
Confidence 33444555555433
No 223
>PHA03291 envelope glycoprotein I; Provisional
Probab=32.04 E-value=1.4e+02 Score=19.17 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=24.6
Q ss_pred EEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205 64 HTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97 (106)
Q Consensus 64 ~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 97 (106)
.-|.+.+....|.|.|...++-........|.+.
T Consensus 129 vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg 162 (401)
T PHA03291 129 PLLRARGAARAVVGLYVLRVWVEGATNASLFPLG 162 (401)
T ss_pred eEEEecCCCcccceeEEEEEEeCCCcccceEEEe
Confidence 3588889999999999999886544443444444
No 224
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=28.88 E-value=64 Score=14.21 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=10.2
Q ss_pred CCEeeEEEEEcCCCc
Q psy17205 75 DFGNYSCVAENSMGK 89 (106)
Q Consensus 75 ~~g~y~C~~~~~~~~ 89 (106)
.+..+.|.+.|.-|.
T Consensus 9 ssnsflctvqnkng~ 23 (65)
T PF13220_consen 9 SSNSFLCTVQNKNGD 23 (65)
T ss_pred CCCceEEEEecccHh
Confidence 345688998886543
No 225
>PHA03290 envelope glycoprotein I; Provisional
Probab=25.06 E-value=1.9e+02 Score=18.44 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=19.5
Q ss_pred EEEEEcccCCCCCEeeEEEEEcC
Q psy17205 64 HTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 64 ~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
.-|++.+....|+|.|..+++-.
T Consensus 129 vLL~I~~P~~~DSGiY~LRV~Ld 151 (357)
T PHA03290 129 IIFKINKPGIEDAGIYLLLVQLD 151 (357)
T ss_pred eEEEeCCCCcccCeeEEEEEEeC
Confidence 35889999999999999988754
No 226
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=24.93 E-value=41 Score=13.12 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=8.9
Q ss_pred eeEEEEEcCCCc
Q psy17205 78 NYSCVAENSMGK 89 (106)
Q Consensus 78 ~y~C~~~~~~~~ 89 (106)
.|.|...+..|.
T Consensus 8 ~Y~C~~C~~~GH 19 (32)
T PF13696_consen 8 GYVCHRCGQKGH 19 (32)
T ss_pred CCEeecCCCCCc
Confidence 588988877654
No 227
>PHA03292 envelope glycoprotein I; Provisional
Probab=23.25 E-value=2.2e+02 Score=18.56 Aligned_cols=24 Identities=21% Similarity=0.041 Sum_probs=19.8
Q ss_pred EEEEEcccCCCCCEeeEEEEEcCC
Q psy17205 64 HTLVIRKVLFTDFGNYSCVAENSM 87 (106)
Q Consensus 64 ~~l~~~~~~~~~~g~y~C~~~~~~ 87 (106)
.-|.|.+....|+|.|..+++-..
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldg 151 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDH 151 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCC
Confidence 358889999999999999887543
No 228
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=21.37 E-value=1.1e+02 Score=14.10 Aligned_cols=20 Identities=40% Similarity=0.477 Sum_probs=12.2
Q ss_pred ecCCeEEEEEEEeecCCCCeEEEee
Q psy17205 20 TRGRRHTLIFFFHFAFCRPQVIWYK 44 (106)
Q Consensus 20 ~~g~~~~~~c~~~~~~p~p~~~w~~ 44 (106)
..|++++|. | .+...+.|++
T Consensus 3 ~~G~N~TL~----G-p~~~~V~Wy~ 22 (63)
T PF02440_consen 3 TVGSNVTLV----G-PPDGPVTWYK 22 (63)
T ss_pred eEcCcEEEe----C-CCCCceEEEE
Confidence 456666664 4 3445688983
No 229
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=20.95 E-value=1.4e+02 Score=15.20 Aligned_cols=60 Identities=8% Similarity=0.011 Sum_probs=31.2
Q ss_pred eEEEEEEEeecCCCCeEEEeeC--CEEcCCCCCEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcC
Q psy17205 24 RHTLIFFFHFAFCRPQVIWYKE--TLKLDTTERRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENS 86 (106)
Q Consensus 24 ~~~~~c~~~~~~p~p~~~w~~~--~~~l~~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~ 86 (106)
.+.-.|.+..|.|+..+.|..+ |.. .. ......++. ...+.+-.....+.....|.+...
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~-et--q~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEA-EF--QEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCce-ee--eeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence 3455798665489999999643 211 00 000000110 112344444455666789998865
Done!