RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17205
(106 letters)
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 67.0 bits (164), Expect = 4e-16
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P V+W K +L +ER G H L++ L TD G Y C A N+ G+
Sbjct: 42 PPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAY 96
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 65.1 bits (159), Expect = 2e-15
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P V W ++ L T+ R + T + T I V +D GNYS V ENS GK
Sbjct: 43 VPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQE 97
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 64.7 bits (158), Expect = 3e-15
Identities = 12/60 (20%), Positives = 21/60 (35%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
W K ++ +E +E L I G Y+ + EN +G + + L
Sbjct: 36 PITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 63.9 bits (156), Expect = 6e-15
Identities = 13/55 (23%), Positives = 19/55 (34%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+V WY ++L + + TL I D G Y V N G+
Sbjct: 37 TAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEAS 91
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 63.6 bits (155), Expect = 7e-15
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+W + ++ R +GR++ LV+R+ +D G K
Sbjct: 39 DPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKAS 92
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 63.2 bits (154), Expect = 1e-14
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
WYK +++ ++R + GR H LVI V D G+Y+ V + L
Sbjct: 37 VTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLN 94
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 63.2 bits (154), Expect = 1e-14
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
P++ W + E ++ +T + + R TL+I+ V D G Y+ A N G T
Sbjct: 44 PPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVT 99
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 65.1 bits (159), Expect = 1e-14
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P + WY+ +L + + M + GR HTL + D G Y+C+A N +G+ +L
Sbjct: 36 LPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95
Query: 97 S 97
Sbjct: 96 L 96
Score = 62.0 bits (151), Expect = 2e-13
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLF-TDFGNYSCVAENSMGKTRQYLE 95
P + W+ L +E +E LV++ V T G Y N G L+
Sbjct: 132 VPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILD 191
Query: 96 LS 97
+
Sbjct: 192 VE 193
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 62.7 bits (153), Expect = 2e-14
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
P+ WYK +K++ ++R LVIR V D + A N G+T
Sbjct: 34 DPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGET 88
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 62.8 bits (153), Expect = 2e-14
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P + W + + +++ H+L+I V D G Y+C+A N G+
Sbjct: 38 TPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNS 93
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 62.3 bits (152), Expect = 2e-14
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 37 RPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+P V W + + +RR E G L I D G Y+C A N G +
Sbjct: 34 KPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQ 89
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 62.4 bits (152), Expect = 2e-14
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+P++ W+K + + + I +L D GNY+ +A N G+
Sbjct: 37 KPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRIS 93
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 66.0 bits (161), Expect = 3e-14
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
QV W+K+ +L + ++ + + ++ I V D G Y C A N +G
Sbjct: 413 PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT 467
Score = 61.7 bits (150), Expect = 9e-13
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
++ W K+ ++ M TL + KV D G Y+C A N GK +L
Sbjct: 227 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 286
Score = 61.0 bits (148), Expect = 2e-12
Identities = 16/60 (26%), Positives = 23/60 (38%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
QV WYK+ L TL I + + G Y+C A N +G +L+
Sbjct: 131 LQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLT 190
Score = 60.2 bits (146), Expect = 3e-12
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
++ WYKE KL + M+ + +LVI KV +D G Y+C AENS+G L
Sbjct: 34 EIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVL 93
Query: 97 S 97
Sbjct: 94 V 94
Score = 58.7 bits (142), Expect = 1e-11
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
+V+WYK+ ++ + + M L + + D G+Y+C A N+ G L
Sbjct: 320 EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 379
Query: 97 S 97
Sbjct: 380 K 380
Score = 58.7 bits (142), Expect = 1e-11
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 38 PQVIWYKETLKLDT-TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
V W+K+ ++ ++ + TL + + G Y+C +N G + L
Sbjct: 507 ISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566
Query: 97 S 97
S
Sbjct: 567 S 567
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 61.5 bits (150), Expect = 3e-14
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
RP IW K+ + + + L I K +D G Y+C +NS G
Sbjct: 35 RPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSV 88
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 61.6 bits (150), Expect = 4e-14
Identities = 9/60 (15%), Positives = 19/60 (31%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P W +++ + ++ D GNY +N +G+ E+
Sbjct: 31 DPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 62.1 bits (151), Expect = 4e-14
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH----TLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
P + W L ++ +E L+ K + GNY+ +A+N +G Q
Sbjct: 34 PPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQ 93
Query: 93 YLELS 97
+
Sbjct: 94 TINGH 98
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 61.2 bits (149), Expect = 4e-14
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+V W + + + + + T G RHTL +R+V D G+Y+ +A +S K
Sbjct: 37 VKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGSSKVKFD 90
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 61.7 bits (150), Expect = 4e-14
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+V WYK+ KL ++ + +E G LV+++ + G YSC A R
Sbjct: 40 TEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 61.6 bits (150), Expect = 5e-14
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 37 RPQVIWYKETLKLDTTERR--IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P+V W K+ + E+ +E TL+I V D G Y+ N G
Sbjct: 34 TPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDS 90
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 61.2 bits (149), Expect = 6e-14
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+V WYK ++ + + I E +G + L I TD Y A + T
Sbjct: 37 LEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCSTE 90
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 61.2 bits (149), Expect = 6e-14
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
W K L + ++R + +GR H LVI L D G+Y + + +
Sbjct: 35 IPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHV 93
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 63.2 bits (154), Expect = 6e-14
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P V +Y++ ++ ++ + G ++L+I + D G YS A NS+G+
Sbjct: 132 TPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRAT 186
Score = 56.7 bits (137), Expect = 2e-11
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
P+V W++ + + T + R L I V + G YS A N G+
Sbjct: 34 VPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTA 93
Query: 95 ELS 97
EL
Sbjct: 94 ELL 96
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 61.3 bits (149), Expect = 7e-14
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
WYK+ K++ +E +++ GR+H L++ + D G + C E
Sbjct: 39 FPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGV 87
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 60.8 bits (148), Expect = 8e-14
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
P V WY + + + +++ + H+L+ V +D G Y+CVA+N G+
Sbjct: 34 APDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEA 88
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 60.5 bits (147), Expect = 1e-13
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMGKTR 91
+P + W+ L+ ++ + H L + + G+Y+ +A+N GK
Sbjct: 30 KPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDE 89
Query: 92 QYLEL 96
+ +
Sbjct: 90 KQISA 94
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 63.0 bits (153), Expect = 1e-13
Identities = 12/63 (19%), Positives = 24/63 (38%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
+V W + ++R G + L I + D G Y + ++ ++L
Sbjct: 32 DLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDL 91
Query: 97 SGK 99
SG+
Sbjct: 92 SGQ 94
Score = 58.7 bits (142), Expect = 4e-12
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
P+V W K L T+ + GR I V D G Y V +N G
Sbjct: 146 PPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE 200
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 60.5 bits (147), Expect = 1e-13
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+V W K+ ++ + +++ LV+ V D G Y C ++
Sbjct: 42 AEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 60.4 bits (147), Expect = 1e-13
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
V W K+ + +++ + G LVIR D G Y+C E S
Sbjct: 37 TPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTAS 90
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 63.8 bits (155), Expect = 1e-13
Identities = 15/82 (18%), Positives = 30/82 (36%)
Query: 18 IETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFG 77
I++ L F + +V W + ++R G + L I + D G
Sbjct: 118 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKG 177
Query: 78 NYSCVAENSMGKTRQYLELSGK 99
Y + ++ ++LSG+
Sbjct: 178 KYVMELFDGKTGHQKTVDLSGQ 199
Score = 61.5 bits (149), Expect = 9e-13
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P+V W K L + + + GR I V D G Y V +N G
Sbjct: 251 PPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFT 310
Query: 96 LS 97
+S
Sbjct: 311 VS 312
Score = 59.2 bits (143), Expect = 6e-12
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
++WYK+ ++ E+ + TL+I + D G Y + ++ GK + L+L
Sbjct: 37 THIVWYKDEREISVDEKHDFKDGI--CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 94
Query: 98 GKYP 101
+
Sbjct: 95 DEAF 98
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 61.4 bits (149), Expect = 2e-13
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
P+V+W+K+ + + +I +L I +V D Y+C A NS+G+
Sbjct: 70 DPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA 124
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 62.0 bits (151), Expect = 2e-13
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
+P V WY+ + + D + RI E +G H L+I V D Y A N G
Sbjct: 33 KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 92
Query: 95 ELS 97
L
Sbjct: 93 SLE 95
Score = 59.3 bits (144), Expect = 2e-12
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K +D +++ TR + V D G Y A+N G ++ +E
Sbjct: 133 DPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192
Query: 96 LS 97
L
Sbjct: 193 LD 194
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 61.7 bits (150), Expect = 2e-13
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+ + K+ +T+R +++ G R L I D G Y C A ++ G+T+
Sbjct: 31 ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 85
Score = 50.6 bits (121), Expect = 3e-09
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P V W ++ T + L I + +D G Y C + ++
Sbjct: 125 APAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGEIDFRDI 183
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 59.8 bits (145), Expect = 2e-13
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 37 RPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P + W K + R + R + +L++ V+ +D GNY+CV EN G
Sbjct: 37 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 92
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 61.3 bits (149), Expect = 3e-13
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
+P V W K L R + G +L I V D G Y CVA+NS+G
Sbjct: 129 KPSVSWIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGT 178
Score = 55.5 bits (134), Expect = 5e-11
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
+P++ W + + + + R R L I V +D G Y C A N +G +
Sbjct: 36 QPEISWTRNKILIKLFDTRY-SIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVE 90
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 58.8 bits (143), Expect = 3e-13
Identities = 9/54 (16%), Positives = 17/54 (31%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
W + L + + G++H L++ G S A N+
Sbjct: 34 VHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAAN 87
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 58.9 bits (143), Expect = 4e-13
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
QV WY +L+ +E+ + L ++ + D G Y C N G+ Y EL
Sbjct: 32 TQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 62.1 bits (151), Expect = 4e-13
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
QV W+K+ +L + ++ + + ++ I V D G Y C A N +G +
Sbjct: 221 PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSI 280
Query: 97 S 97
+
Sbjct: 281 T 281
Score = 61.3 bits (149), Expect = 9e-13
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
+V+WYK+ ++ + + M L + + D G+Y+C A N+ G L
Sbjct: 128 EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 187
Query: 97 S 97
Sbjct: 188 K 188
Score = 60.9 bits (148), Expect = 1e-12
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
++ W K+ ++ M TL + KV D G Y+C A N GK +L
Sbjct: 35 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 94
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 62.3 bits (151), Expect = 5e-13
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
+ W K+ + + + R +E++G + + + + D G YSC ++ G Y
Sbjct: 32 SEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSY 87
Score = 61.2 bits (148), Expect = 1e-12
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
++WYK+ ++ E+ + TL+I + D G Y + ++ GK + L+L
Sbjct: 252 THIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309
Query: 98 GK 99
+
Sbjct: 310 DE 311
Score = 57.7 bits (139), Expect = 2e-11
Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 2/71 (2%)
Query: 38 PQVIWYKETLKLDTTERRIMETR--GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
+V + ++ + M + + K+ D G Y+ ++ +
Sbjct: 138 AKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVV 197
Query: 96 LSGKYPNAQEP 106
L G +
Sbjct: 198 LVGDVFKKLQK 208
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 57.7 bits (140), Expect = 1e-12
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
V W K L+L + + G L I + D Y+C + + +
Sbjct: 36 AATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQ 90
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 57.7 bits (140), Expect = 1e-12
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
PQ++W+K+ L +++ L IR+V D G Y+C A + +G +
Sbjct: 40 PQIMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAK 91
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 60.0 bits (145), Expect = 2e-12
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH-------TLVIRKVLFTDFGNYSCVAENSMGK 89
+ W+K+ + + T + + LV + +D G YSC A N G
Sbjct: 137 PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT 196
Query: 90 TRQYLELS 97
+
Sbjct: 197 PMTSNAVR 204
Score = 46.9 bits (111), Expect = 1e-07
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 37 RPQVIWYKE---TLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMG 88
P+V W + T +L +I + R + + V D G Y+C+ G
Sbjct: 33 SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG 92
Query: 89 KTRQ 92
+
Sbjct: 93 NSYG 96
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 59.4 bits (144), Expect = 2e-12
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P + W++ ++ E+ I++ L +R ++ +D G Y C A N G+ + L
Sbjct: 127 EPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Query: 97 S 97
Sbjct: 185 Q 185
Score = 49.8 bits (119), Expect = 8e-09
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P V W ++ T + L I + +D G Y C
Sbjct: 31 APAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEAR 81
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 57.4 bits (139), Expect = 2e-12
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
RPQV+W K LDT R + T +R+ +D G Y + K
Sbjct: 53 RPQVVWTKGGAPLDT-SRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMK 104
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 57.0 bits (138), Expect = 3e-12
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 38 PQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+V W K ++ + + I E+ G + TL I + D Y CV T
Sbjct: 45 AEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 59.8 bits (145), Expect = 3e-12
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 37 RPQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
+P V WY++ + D + RI E +G H L+I V D Y A N G
Sbjct: 33 KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 92
Query: 95 ELSGKYP 101
L + P
Sbjct: 93 SLEVEVP 99
Score = 56.7 bits (137), Expect = 4e-11
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K +D +++ TR + V D G Y A+N G ++ +E
Sbjct: 133 DPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192
Query: 96 L 96
L
Sbjct: 193 L 193
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 59.2 bits (143), Expect = 3e-12
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + R ++ R ++ +LV+ V+ +D GNY+CV EN G RQ
Sbjct: 44 TPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT 103
Query: 96 LS 97
L
Sbjct: 104 LD 105
Score = 46.9 bits (111), Expect = 1e-07
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 12/82 (14%)
Query: 37 RPQVIWYKE------------TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE 84
+P + W K T + + I E+ L + V D G Y C A
Sbjct: 143 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRAT 202
Query: 85 NSMGKTRQYLELSGKYPNAQEP 106
N +G + LS P A E
Sbjct: 203 NFIGVAEKAFWLSVHGPRAAEE 224
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 56.2 bits (136), Expect = 4e-12
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P + W KE + R TL I+ + +D G Y+CVA +S G+T L
Sbjct: 37 LPVISWLKEGFTFPGRDPRATIQEQ--GTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
Query: 97 S 97
Sbjct: 95 D 95
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 56.6 bits (137), Expect = 5e-12
Identities = 14/55 (25%), Positives = 18/55 (32%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
V W K L R ++ G R L I + D G YSC+
Sbjct: 35 VAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSAT 89
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB:
2xy1_A*
Length = 192
Score = 57.9 bits (140), Expect = 6e-12
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
P + W++ ++ E+ I++ L +R ++ +D G Y C A N G+ + L
Sbjct: 34 PAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 91
Score = 57.1 bits (138), Expect = 1e-11
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 37 RPQVIWYKETLKLDTTE-------RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
P++ W + TE R ++ + +L I+ V +D G Y C A + +G
Sbjct: 123 IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 182
Query: 90 TRQYLELS 97
++ + L
Sbjct: 183 HQKSMYLD 190
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 55.8 bits (135), Expect = 7e-12
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P++ W + L I+ L D G Y+C+AEN++G+
Sbjct: 40 VPRITWLLNGQPIQYARSTC---EAGVAELHIQDALPEDHGTYTCLAENALGQVS 91
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 56.3 bits (136), Expect = 7e-12
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P ++W K+ + + T + RI + L IR D G Y+C+A G+
Sbjct: 37 VPTILWRKDGVLVSTQDSRIKQLEN--GVLQIRYAKLGDTGRYTCIASTPSGEAT 89
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 57.9 bits (140), Expect = 8e-12
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P + W K K+D + R G L I D G Y CVAENSMG
Sbjct: 139 TPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEH 190
Score = 50.6 bits (121), Expect = 5e-09
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 37 RPQVIWYKETLKLDTTERR--IMETRGRRHTLVIRKV-LFTDFGNYSCVAENSMGKTRQ 92
P ++W K K+ T+ R ++E G L I V D Y CVAEN +G
Sbjct: 35 PPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVS 93
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 58.0 bits (140), Expect = 9e-12
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + R + R + +L++ V+ +D GNY+CV EN G
Sbjct: 48 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 107
Query: 96 LS 97
L
Sbjct: 108 LD 109
Score = 47.2 bits (112), Expect = 8e-08
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 11/67 (16%)
Query: 37 RPQVIWYKE------TLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAEN 85
+P + W K D + + L + V D G Y C N
Sbjct: 147 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206
Query: 86 SMGKTRQ 92
+G+ Q
Sbjct: 207 YIGQANQ 213
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 55.4 bits (134), Expect = 1e-11
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 38 PQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
V W+K E + R + G++H L+I D YS + +
Sbjct: 36 ANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAK 91
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 58.5 bits (141), Expect = 1e-11
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
+W + L+ ++ RG ++VI K+ T G Y ++ +
Sbjct: 77 NISCLWVFKHSSLNCQPHFDLQNRGV-VSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135
Query: 97 S 97
S
Sbjct: 136 S 136
Score = 52.0 bits (124), Expect = 3e-09
Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
+ + W ++ + +++ G Y AEN + + L
Sbjct: 355 QIRCTWTFSRKSFPCEQKGLDN----GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410
Query: 97 SGKYP 101
+ +
Sbjct: 411 NIRSG 415
Score = 51.6 bits (123), Expect = 3e-09
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 6/60 (10%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH------TLVIRKVLFTDFGNYSCVAENSMGKT 90
+ W E L+ M T + V D G Y+C + ++
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Score = 36.2 bits (83), Expect = 8e-04
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 8/71 (11%)
Query: 38 PQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P V W + E + + V+ ++ TD C A N +G+ L
Sbjct: 169 PIVEWVLCDSQGESCKEESPAVVKKE---EKVLHELFGTD---IRCCARNELGRECTRLF 222
Query: 96 LSGKYPNAQEP 106
Q
Sbjct: 223 TIDLNQTPQTT 233
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 57.5 bits (139), Expect = 1e-11
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P + W K+ LD + RI G L+I +D G Y CV N +G+
Sbjct: 141 EPTISWKKDGSPLDDKDERITIRGG---KLMITYTRKSDAGKYVCVGTNMVGERE 192
Score = 43.3 bits (102), Expect = 2e-06
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 37 RPQVIWYKETLKLDTTERRIMETR-------GRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
P + WYK +++T + R +V + D G Y CVA N +G+
Sbjct: 38 TPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE 97
Query: 90 TR 91
Sbjct: 98 AV 99
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 57.3 bits (138), Expect = 1e-11
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
++WYK+ ++ E+ + TL+I + D G Y + ++ GK + L+L
Sbjct: 147 THIVWYKDEREISVDEKHDFKDG--ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 204
Query: 98 GK 99
+
Sbjct: 205 DE 206
Score = 51.5 bits (123), Expect = 2e-09
Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 2/71 (2%)
Query: 37 RPQVIWYKETLKLDTTERRIMET--RGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
+V + ++ + M + + K+ D G Y+ ++ +
Sbjct: 32 NAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTV 91
Query: 95 ELSGKYPNAQE 105
L G +
Sbjct: 92 VLVGDVFKKLQ 102
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 58.2 bits (140), Expect = 1e-11
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
+W + L+ ++ RG ++VI K+ T G Y ++ +
Sbjct: 77 NISCLWVFKHSSLNCQPHFDLQNRGV-VSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135
Query: 97 SGKYP 101
S +
Sbjct: 136 SIRNT 140
Score = 53.5 bits (128), Expect = 6e-10
Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
+ + W ++ + +++ G Y AEN + + L
Sbjct: 355 QIRCTWTFSRKSFPCEQKGLDN----GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410
Query: 97 SGKYP 101
+ +
Sbjct: 411 NIRRK 415
Score = 51.2 bits (122), Expect = 4e-09
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 6/60 (10%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH------TLVIRKVLFTDFGNYSCVAENSMGKT 90
+ W E L+ M T + V D G Y+C + ++
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Score = 38.9 bits (90), Expect = 9e-05
Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 13/83 (15%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHT-----------LVIRKVLFTDFGNYSCVAEN 85
P W K + K I E R + C A N
Sbjct: 436 LPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYN 495
Query: 86 SMGKTRQ--YLELSGKYPNAQEP 106
S+G + + L G +P Q+
Sbjct: 496 SLGTSCETILLNSPGPFPFIQDG 518
Score = 34.7 bits (79), Expect = 0.003
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P V W + ++ + E + + + C A N +G+
Sbjct: 169 PIVEWVLCDSQGESCK----EESPAVVKKEEKVLHELFGTDIRCCARNELGREC 218
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 55.1 bits (133), Expect = 2e-11
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
+ W ++ ++L + R TR + ++ + D G Y+CV + G Y ++
Sbjct: 32 QSINWLRDGVQLAESNR----TRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 55.1 bits (133), Expect = 2e-11
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
V W+K L +R + G R L IR ++ D G Y C+
Sbjct: 47 APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKE 95
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 57.5 bits (139), Expect = 2e-11
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P + W++ ++ E+ I++ L +R ++ +D G Y C A N G+
Sbjct: 223 EPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDE 275
Score = 55.6 bits (134), Expect = 1e-10
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 38 PQVIWYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+ WY + K+ +T+R +++ G R L I D G Y C A ++ G+T+
Sbjct: 33 ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 87
Score = 48.3 bits (115), Expect = 4e-08
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P V W E + + R M L I + +D G Y C
Sbjct: 127 APAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEAR 177
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 56.8 bits (137), Expect = 2e-11
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 38 PQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
+ W++ + L + L + DFGNY+C A N +G+
Sbjct: 48 ATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFI 107
Query: 96 LS 97
L
Sbjct: 108 LV 109
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 54.3 bits (131), Expect = 3e-11
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
V W+ + L E I G H L +R++ D G A +
Sbjct: 42 YEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQ 92
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 56.9 bits (137), Expect = 4e-11
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + R ++ R ++ +LV+ V+ +D GNY+CV EN G RQ
Sbjct: 152 TPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT 211
Query: 96 LS 97
L
Sbjct: 212 LD 213
Score = 55.0 bits (132), Expect = 2e-10
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
+W K+ L +ER ++ L + D G YSC + +
Sbjct: 38 MGPTVWVKDGTGLVPSERVLVGP----QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVR 93
Query: 97 SGKYPNAQEP 106
P++ +
Sbjct: 94 VTDAPSSGDD 103
Score = 46.5 bits (110), Expect = 2e-07
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 37 RPQVIWYKET------LKLDTTERRIMETRGRRH-------TLVIRKVLFTDFGNYSCVA 83
+P + W K + D T + + L + V F D G Y+C+A
Sbjct: 251 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310
Query: 84 ENSMGKTRQ 92
NS+G +
Sbjct: 311 GNSIGFSHH 319
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 55.6 bits (134), Expect = 4e-11
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGR--RHTLVIRKVLFTDFGNYSCVAENSMG 88
P + W K+ + ++ + + L ++ V +D G Y C E+
Sbjct: 31 EPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGE 84
Score = 44.0 bits (104), Expect = 9e-07
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 9/52 (17%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
++W++ T K+ V+ T +SC A N G
Sbjct: 130 TIVWWRGTTKIGGPAPS---------PSVLNVTGVTQSTMFSCEAHNLKGLA 172
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 56.4 bits (136), Expect = 6e-11
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P V W K + ++ + L I V+ +D G Y CVAEN G + +L
Sbjct: 341 VPTVNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397
Query: 97 S 97
Sbjct: 398 I 398
Score = 54.8 bits (132), Expect = 2e-10
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P W + + ++ G L+I V D G Y+CV EL
Sbjct: 250 PPSFTWLRGEEVIQLRSKKYSLLGG--SNLLISNVTDDDSGTYTCVVTYKNENISASAEL 307
Query: 97 S 97
+
Sbjct: 308 T 308
Score = 48.3 bits (115), Expect = 4e-08
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P + W K + L + R++ L I ++ D G Y C A N
Sbjct: 150 MPTIHWQKNQQDLNPIPGDSRVVVLPS--GALQISRLQPGDSGVYRCSARNPAS 201
Score = 44.1 bits (104), Expect = 1e-06
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 38 PQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFT-----DFGNYSCVAENSMGKT 90
P + W K L L +R+ G +L+I+ +L + D G Y C A +
Sbjct: 52 PVIKWKKDGLILALGMDDRKQQLPNG---SLLIQNILHSRHHKPDEGLYQCEASLGDSGS 108
Query: 91 RQ 92
Sbjct: 109 II 110
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 56.7 bits (136), Expect = 6e-11
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
PQ++W+K+ L +++ R L IR+V D G Y+C A + +G +
Sbjct: 696 PQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 753
Score = 54.4 bits (130), Expect = 4e-10
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
P++ WYK + L++ H L I +V D GNY+ + N + K +Q +S
Sbjct: 360 PEIKWYKNGIPLESNHTIKAG-----HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414
Score = 49.8 bits (118), Expect = 1e-08
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 36 CR----PQVIWYKETLKLDTTERRIMETRGRRH-TLVIRKVLFTDFGNYSCVAENSMGKT 90
CR +W + + G TL I KV+ D G Y C + +
Sbjct: 53 CRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLAS 112
Query: 91 RQYLELS 97
Y+ +
Sbjct: 113 VIYVYVQ 119
Score = 42.8 bits (100), Expect = 4e-06
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRH----------TLVIRKVLFTDFGNYSCVAENSM 87
+ + E ++++ + TL I V +D G Y+C A + +
Sbjct: 254 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 313
Query: 88 GKTRQYLEL 96
+ +
Sbjct: 314 MTKKNSTFV 322
Score = 42.8 bits (100), Expect = 4e-06
Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 8/98 (8%)
Query: 1 VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR 60
+ WY + + E + + + V ++ K++ + +
Sbjct: 456 IHWYWQLEEECANEPSQAVSVTNPYPCEEW-------RSVEDFQGGNKIEVNKNQFALIE 508
Query: 61 GRRHT-LVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
G+ T + Y C A N +G+ + +
Sbjct: 509 GKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH 546
Score = 41.7 bits (97), Expect = 1e-05
Identities = 10/81 (12%), Positives = 21/81 (25%), Gaps = 20/81 (24%)
Query: 37 RPQVIWYKETLKLDTTE--------------------RRIMETRGRRHTLVIRKVLFTDF 76
+ WYK + + + ++ D
Sbjct: 578 FENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQ 637
Query: 77 GNYSCVAENSMGKTRQYLELS 97
G+Y C+A++ K R +
Sbjct: 638 GDYVCLAQDRKTKKRHCVVRQ 658
Score = 38.2 bits (88), Expect = 2e-04
Identities = 6/54 (11%), Positives = 14/54 (25%), Gaps = 2/54 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+ + RI + I + + G C A+ + +
Sbjct: 159 VSLCARYPEKRFVPDGNRISWDS--KKGFTIPSYMISYAGMVFCEAKINDESYQ 210
Score = 27.0 bits (59), Expect = 1.2
Identities = 3/30 (10%), Positives = 9/30 (30%)
Query: 68 IRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
++ + + CV + + L
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLD 30
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 53.5 bits (129), Expect = 7e-11
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 38 PQVIWYKETLKLDTTE----RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
QV+W K ++L + R + G+RH L+ V+ D G Y +
Sbjct: 37 AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGG 89
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 55.3 bits (133), Expect = 8e-11
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRR-----HTLVIRKVLFTDFGNYSCVAENSMGK 89
P +IW K+ + LD + R L+I V D GNY C+A+N +G
Sbjct: 138 EPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGT 195
Score = 49.1 bits (117), Expect = 2e-08
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 37 RPQVIWYKETLKLDTTERR----IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P + W+K+ + T E++ + ++ D G Y CVA+N +G+
Sbjct: 38 EPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAV 96
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold,
transmembrane, glycoprotein, signal, complex
(immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 55.9 bits (134), Expect = 8e-11
Identities = 13/60 (21%), Positives = 20/60 (33%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
+ WYK+ K + + + L D G+Y CV NS R +
Sbjct: 36 GTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK 95
Score = 50.1 bits (119), Expect = 1e-08
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P++ WYK+ L + L++ V GNY+C A +
Sbjct: 138 LPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYL 186
Score = 46.6 bits (110), Expect = 2e-07
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRR------------HTLVIRKVLFTDF-GNYSCVA 83
W +D + + E L I ++ + ++C A
Sbjct: 238 SDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFA 297
Query: 84 ENSMGKTRQYLEL 96
+N+ G Y++L
Sbjct: 298 KNTHGIDAAYIQL 310
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 55.6 bits (134), Expect = 9e-11
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P++ W+K+ L +D + + R L I TD G Y CVA NS G
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
Score = 52.5 bits (126), Expect = 1e-09
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIME-TRGRRHTLVIRKVLFT-DFGNYSCVAENSMGKTRQYL 94
+P+V W K+ K+++ +E L I+ + D Y CVA+NS+G+ +
Sbjct: 35 KPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHA 94
Query: 95 ELS 97
+L+
Sbjct: 95 KLT 97
Score = 50.6 bits (121), Expect = 6e-09
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P V W + L + + V+ D NY+CVA +S+G
Sbjct: 234 MPYVKWMQGAEDLTPEDDMPV------GRNVLELTDVKDSANYTCVAMSSLGVIE 282
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 55.0 bits (132), Expect = 1e-10
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH--------TLVIRKVLFTDFGNYSCVAENSMG 88
+ W+K+ + + T + + L+ V D G Y C A+N G
Sbjct: 134 PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 193
Query: 89 KTRQYLEL 96
+
Sbjct: 194 TAMRSEAA 201
Score = 45.0 bits (106), Expect = 5e-07
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 37 RPQVIWYK---ETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMG 88
P+V W T L +I R + V D G Y+C+ G
Sbjct: 30 SPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGG 89
Query: 89 KTR 91
+
Sbjct: 90 QNY 92
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 55.7 bits (134), Expect = 1e-10
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH--TLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
P WYK + ++ R ++ TL+I+ + D G Y CV NS+G
Sbjct: 277 VPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET 336
Query: 95 ELSGKYP 101
L+ P
Sbjct: 337 VLTVTAP 343
Score = 54.6 bits (131), Expect = 3e-10
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMGKTR 91
P++ W + K+ +R + + L I V D G Y C+A++ +G
Sbjct: 458 TPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE 517
Query: 92 QYLELS 97
+L+
Sbjct: 518 HSAKLN 523
Score = 51.5 bits (123), Expect = 3e-09
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSMGKT 90
+PQV W K + + ++ R TL + + T+ G Y C A N +G
Sbjct: 743 KPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSG 799
Score = 49.9 bits (119), Expect = 1e-08
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKV-LFTDFGNYSCVAENSMGKT 90
++W ++ L ++ + G TL+I V +D Y+CVA+N G +
Sbjct: 556 DSIVWERDNRALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYS 606
Score = 46.9 bits (111), Expect = 2e-07
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 12/67 (17%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK--TRQYL 94
V W K+ + +E L I V D G Y C N L
Sbjct: 372 IKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAEL 421
Query: 95 ELSGKYP 101
+L G++
Sbjct: 422 KLGGRFD 428
Score = 46.1 bits (109), Expect = 3e-07
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 11/63 (17%)
Query: 37 RPQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDF------GNYSCVAENSMG 88
P++IW + T D R + + G LV D+ Y+C+A N G
Sbjct: 68 MPEIIWIRSDGTAVGDVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFG 124
Query: 89 KTR 91
Sbjct: 125 SII 127
Score = 45.7 bits (108), Expect = 4e-07
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 39 QVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+ W + + R L I V + GN++C A N G +
Sbjct: 651 NIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQ 704
Score = 41.8 bits (98), Expect = 7e-06
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 37 RPQVIWYKE-----TLKLDTTERRIMETRGRRHTLVIRKVLFTD-FGNYSCVAENSMGKT 90
V W+ + + + ++ G L IR+V D + +Y C ++ +
Sbjct: 170 VEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGE 226
Query: 91 RQ 92
+
Sbjct: 227 TR 228
Score = 32.6 bits (74), Expect = 0.017
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 66 LVIRKVLFTDFGNYSCVAENSMGKT 90
+ + ++ VA + G
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQ 25
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 52.5 bits (126), Expect = 1e-10
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
+ W ++ ++L + R TR + +R + D G Y+CV + G Y ++
Sbjct: 38 QSINWLRDGVQLVESNR----TRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 55.5 bits (133), Expect = 1e-10
Identities = 12/61 (19%), Positives = 19/61 (31%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
R + W+K + L + L D G Y C N+ + +EL
Sbjct: 54 RINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIEL 113
Query: 97 S 97
Sbjct: 114 R 114
Score = 54.3 bits (130), Expect = 3e-10
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
++ WYK++L LD + + RG L++ V D G Y CV + +
Sbjct: 154 DVKIQWYKDSLLLDKDNEKFLSVRGT-THLLVHDVALEDAGYYRCVLTFAHEGQQ 207
Score = 43.9 bits (103), Expect = 2e-06
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 14/73 (19%)
Query: 38 PQVIWYK---ETLKLDTTERRIMETRGRR----------HTLVIRKVLFTDFG-NYSCVA 83
++W+ ++ R+ E + L+ V D ++ CV
Sbjct: 259 TTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVV 318
Query: 84 ENSMGKTRQYLEL 96
N++ +
Sbjct: 319 HNTLSFQTLRTTV 331
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 54.5 bits (131), Expect = 1e-10
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
P + W K + +T L I + D G Y C AEN GK + +
Sbjct: 143 PDIRWRKVLEPMPSTAEISTS----GAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
Score = 47.2 bits (112), Expect = 6e-08
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
W + + +RR + L I V +D GNYSC +
Sbjct: 39 DLSYRWLLNEFPVFITMDKRRFVSQTN--GNLYIANVEASDKGNYSCFVSSPSITKSV 94
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 52.3 bits (126), Expect = 1e-10
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
V W L ++ + G LV+R + D G YSC +
Sbjct: 37 APVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQ 85
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 54.4 bits (131), Expect = 2e-10
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETR-GRRHTLVIRKV-LFTDFGNYSCVAENSMGKTRQYL 94
RP+++W K+ K+ ++E G L I+ + D Y CVA N++G+
Sbjct: 35 RPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVST 94
Query: 95 ELS 97
L+
Sbjct: 95 RLT 97
Score = 54.1 bits (130), Expect = 2e-10
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 37 RPQVIWYKETLKLDTTERRIMETR---GRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
P++ W+K+ L +DT+ + L I + +D G Y CVA NS G
Sbjct: 137 DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR 193
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 54.9 bits (132), Expect = 2e-10
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRR--HTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P WYK + ++ R ++ TL+I+ + D G Y CV NS+G
Sbjct: 242 PSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 301
Query: 96 LS 97
L+
Sbjct: 302 LT 303
Score = 44.2 bits (104), Expect = 1e-06
Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 10/53 (18%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
V W K+ + +E L I V D G Y C N
Sbjct: 336 IKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRES 378
Score = 43.8 bits (103), Expect = 2e-06
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 11/63 (17%)
Query: 37 RPQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDF------GNYSCVAENSMG 88
P++IW + T D R + + G LV D+ Y+C+A N G
Sbjct: 33 MPEIIWIRSDGTAVGDVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFG 89
Query: 89 KTR 91
Sbjct: 90 SII 92
Score = 40.7 bits (95), Expect = 2e-05
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 37 RPQVIWYKE-----TLKLDTTERRIMETRGRRHTLVIRKVLFTD-FGNYSCVAENSMGKT 90
V W+ + + + ++ G L IR+V D + +Y C ++ +
Sbjct: 135 VEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGE 191
Query: 91 RQ 92
+
Sbjct: 192 TR 193
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 54.4 bits (131), Expect = 3e-10
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 37 RPQVIWYKETLKLDTTE-------RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
P++ W + TE R ++ + +L I+ V +D G Y C A + +G
Sbjct: 29 IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 88
Query: 90 TRQYLELSGKYP 101
++ + L +Y
Sbjct: 89 HQKSMYLDIEYA 100
Score = 53.3 bits (128), Expect = 9e-10
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 38 PQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
+ W + L T + GR+ L I DFG Y+C A N +G Q
Sbjct: 130 ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYI 189
Query: 96 L 96
L
Sbjct: 190 L 190
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 51.6 bits (124), Expect = 3e-10
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
PQ+ W K+ + L L++ ++ D G YSCVA +S +
Sbjct: 39 SPQIHWMKDGVPLPLPPS---------PVLILPEIGPQDQGTYSCVATHSSHGPQ 84
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 53.7 bits (129), Expect = 5e-10
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
P + WYK+ L + + + L I V D G Y C+A N MG R + +
Sbjct: 252 PDIAWYKKGGDLPSDKAKFENFNK---ALRITNVSEEDSGEYFCLASNKMGSIRHTISVR 308
Score = 49.5 bits (118), Expect = 2e-08
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+P V W E L+ T++ R + Y C N G
Sbjct: 341 KPTVQWMVNGEPLQSAPPNPNREVAGD---TIIFRDTQISSRAVYQCNTSNEHG 391
Score = 47.6 bits (113), Expect = 9e-08
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTD-FGNYSCVAENSMGKTRQ 92
P + W +++ T ++R+ + L V+ D +YSC A T Q
Sbjct: 147 PVIFWMSSSMEPITQDKRVSQGHN--GDLYFSNVMLQDMQTDYSCNARFHFTHTIQ 200
Score = 42.9 bits (101), Expect = 3e-06
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKV----LFTDFGNYSCVAENSMGK 89
P W + + + + + R R TLVI G Y C A N G
Sbjct: 46 APSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGT 102
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 53.3 bits (128), Expect = 7e-10
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P V W+K+ +L + + + G + L I +V D G Y+ A+NS G + + L
Sbjct: 512 PVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin
fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP:
b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 52.1 bits (125), Expect = 8e-10
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 38 PQVIWYK---ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
+ W+ E L + ++ TL I D G Y CV G
Sbjct: 33 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ 88
Score = 50.6 bits (121), Expect = 4e-09
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P +IW + + + + L IR + TD G Y C + ++
Sbjct: 129 PPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 187
Query: 97 S 97
Sbjct: 188 Q 188
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 52.3 bits (125), Expect = 8e-10
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 38 PQVIWYKETLKLD------TTERRIMETRGRRHTLVIRKVLFT-DFGNYSCVAENSMGKT 90
WYK T D + R + + R L I + D G Y C +S G
Sbjct: 114 TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD 173
Query: 91 RQYLELSGKY 100
+ + L +
Sbjct: 174 QAIITLRVRS 183
Score = 40.4 bits (94), Expect = 2e-05
Identities = 9/53 (16%), Positives = 12/53 (22%), Gaps = 7/53 (13%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
W K + E + +G YSCV T
Sbjct: 30 TGHRWLKG-------GVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGT 75
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 53.4 bits (128), Expect = 8e-10
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 38 PQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
++K + + +R R L+ + L D G Y+C +N +GK
Sbjct: 242 GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 296
Score = 51.4 bits (123), Expect = 3e-09
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P V+W L + R + LVI+ V D G Y C A N G +
Sbjct: 338 APNVVWSHNAKPL-SGGRATVT----DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 392
Query: 97 S 97
Sbjct: 393 Q 393
Score = 45.3 bits (107), Expect = 4e-07
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 38 PQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+ W K+ + + + G +LV + +D G+Y C AE G
Sbjct: 37 VKYSWKKDGKSYNWQEHNAALRKDEG---SLVFLRPQASDEGHYQCFAETPAG 86
Score = 41.8 bits (98), Expect = 9e-06
Identities = 13/62 (20%), Positives = 16/62 (25%), Gaps = 7/62 (11%)
Query: 38 PQVIWYKETLKLDTTERRIMETR----GRRHTLVIRKVLFTD---FGNYSCVAENSMGKT 90
P + W K D R G L V D Y C A+N+
Sbjct: 131 PLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE 190
Query: 91 RQ 92
Sbjct: 191 EV 192
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 51.1 bits (122), Expect = 9e-10
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRG-------RRHTLVIRKVLFTDFGNYSCVAENSMGK 89
P + W L+ T E R L + + + GNY+ +A N G+
Sbjct: 29 APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ 88
Query: 90 TRQYLEL 96
+
Sbjct: 89 ASASIMA 95
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 53.0 bits (127), Expect = 9e-10
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIME--TRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
P + W K+ ++ E + L IR V D Y C+AEN G+ +
Sbjct: 225 EPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASI 284
Query: 95 ELS 97
L
Sbjct: 285 HLK 287
Score = 50.6 bits (121), Expect = 5e-09
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 38 PQVIWYKE-TLKLDTTERRIM--ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT-RQY 93
+ W+ KL ++RI TL I D G Y CV G
Sbjct: 33 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT 92
Query: 94 LELS 97
+ +
Sbjct: 93 VNVK 96
Score = 47.9 bits (114), Expect = 6e-08
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P +IW + + + + L IR + TD G Y C + ++
Sbjct: 129 PPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 187
Query: 97 S 97
Sbjct: 188 Q 188
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 52.9 bits (127), Expect = 1e-09
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
P ++W + K + R ++ G L I D G+Y CVAENS GK +L+
Sbjct: 235 PTILWRRADGKPIARKARRHKSNG---ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 291
Score = 52.9 bits (127), Expect = 1e-09
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+P W K L T +R +E + TL I V +D G Y CVAEN G
Sbjct: 324 KPTYRWLKNGDPLLTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHG 371
Score = 50.6 bits (121), Expect = 6e-09
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
W RR + L I KV +D GNY+CV N++ +
Sbjct: 132 ELSYAWIFNEYPSYQDNRRFVSQET--GNLYIAKVEKSDVGNYTCVVTNTVTNHKV 185
Score = 42.5 bits (100), Expect = 5e-06
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 37 RPQVIWYKETLKLDT-TERRIMETRGRRHTLVIRKVLFT-DFGNYSCVAENSMGKTR 91
+P + W +D + R G +L+I T D G Y C+A NS G
Sbjct: 37 KPHIRWKLNGTDVDIGMDFRYSVVDG---SLLINNPNKTQDAGTYQCIATNSFGTIV 90
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 52.4 bits (125), Expect = 1e-09
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
Q W K + + E + ++ G YSC +N +G + L L
Sbjct: 151 PLQFEWQKLSDSQTMPTPWLAEMTS--PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208
Query: 97 S 97
Sbjct: 209 D 209
Score = 35.0 bits (80), Expect = 0.002
Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 24/83 (28%)
Query: 38 PQVIWYKETLKLDTTERRIM-------------ETRGRRH-----------TLVIRKVLF 73
+ W ++ I+ + +GR H ++ + +
Sbjct: 34 LDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQL 93
Query: 74 TDFGNYSCVAENSMGKTRQYLEL 96
+D G Y C + + G + L
Sbjct: 94 SDIGTYQCKVKKAPGVANKKFLL 116
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 52.2 bits (125), Expect = 2e-09
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
RP V W ++ L + R + L K++ D G Y CVAEN G EL
Sbjct: 323 RPAVRWLRDGQPLASQNRIEVS----GGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378
Query: 97 S 97
+
Sbjct: 379 T 379
Score = 50.2 bits (120), Expect = 9e-09
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 37 RPQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
W + RR + L I K +D GNYSC A + + +
Sbjct: 131 ALSYRWLLNEFPNFIPADGRRFVSQTT--GNLYIAKTEASDLGNYSCFATSHIDFITK 186
Score = 49.9 bits (119), Expect = 1e-08
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
PQ+ W K + + L I+ V F D G Y C AEN G+ +
Sbjct: 237 PQIKWRKLD------GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 290
Score = 41.0 bits (96), Expect = 2e-05
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 37 RPQVIWYKETLKLDT-TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
W +L + R G ++ V D G+Y CVA N+ G
Sbjct: 36 PATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQCVATNARG 86
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 52.3 bits (125), Expect = 2e-09
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+W+ L + R + R TL + V D Y C +NS+ R
Sbjct: 496 TTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANR 547
Score = 52.3 bits (125), Expect = 2e-09
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+W+ L + R + R TL + V D G Y C +N +
Sbjct: 318 TTYLWWVNNQSLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYECGIQNELSVDH 369
Score = 50.0 bits (119), Expect = 1e-08
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+W+ L + R + R TL + V D +Y C +N + R
Sbjct: 140 ATYLWWVNNQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARR 191
Score = 45.3 bits (107), Expect = 5e-07
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 11/56 (19%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
Q W+ +T L I + + G+Y+C A NS +
Sbjct: 232 PAQYSWFVNGTFQQST-----------QELFIPNITVNNSGSYTCQAHNSDTGLNR 276
Score = 44.9 bits (106), Expect = 7e-07
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 11/60 (18%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
Q W + T+ L I + + G Y+C A NS + +
Sbjct: 411 AQYSWLID-------GNIQQHTQ----ELFISNITEKNSGLYTCQANNSASGHSRTTVKT 459
Score = 42.6 bits (100), Expect = 5e-06
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 11/60 (18%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
PQ W + T L I K+ + G Y+C N + S
Sbjct: 589 PQYSWRINGIPQQHT-----------QVLFIAKITPNNNGTYACFVSNLATGRNNSIVKS 637
Score = 39.9 bits (93), Expect = 4e-05
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 16/71 (22%)
Query: 38 PQVIWYKETLKLDTTERR-----------IMETRGRRH-----TLVIRKVLFTDFGNYSC 81
WYK + GR +L+I+ ++ D G Y+
Sbjct: 29 FGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTL 88
Query: 82 VAENSMGKTRQ 92
S +
Sbjct: 89 HVIKSDLVNEE 99
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 49.4 bits (118), Expect = 2e-09
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
++W + + R M+ G L IR V +D G Y C N + L
Sbjct: 40 AYTLVWTRLHNGKLPS--RAMDFNG---ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
Query: 97 S 97
Sbjct: 95 H 95
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 51.6 bits (123), Expect = 3e-09
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMGKTR 91
W +E + E+ G + TL I D G + C A N+ G
Sbjct: 241 SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN 300
Query: 92 Q 92
Sbjct: 301 V 301
Score = 49.7 bits (118), Expect = 1e-08
Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 6/71 (8%)
Query: 37 RPQVI-WYKETLKLDTTERRIMETRGRR-----HTLVIRKVLFTDFGNYSCVAENSMGKT 90
+P+ W ++ L + ++ T+ G Y+ + NS
Sbjct: 342 KPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA 401
Query: 91 RQYLELSGKYP 101
+
Sbjct: 402 AIAFNVYVNTK 412
Score = 45.8 bits (108), Expect = 3e-07
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 36 CRPQ--VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
C V W E L +++ + K T+ G Y+C ++ + +
Sbjct: 58 CTDPGFVKWTFEILDETN--------ENKQNEWITEKAEATNTGKYTCTNKHGLSNS 106
Score = 44.7 bits (105), Expect = 8e-07
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 12/76 (15%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRH------------TLVIRKVLFTDFGNYSCVAEN 85
P + WY ++ + I F G C A N
Sbjct: 436 PTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYN 495
Query: 86 SMGKTRQYLELSGKYP 101
+GKT Y + K
Sbjct: 496 DVGKTSAYFNFAFKGN 511
Score = 31.2 bits (70), Expect = 0.051
Identities = 7/56 (12%), Positives = 14/56 (25%), Gaps = 4/56 (7%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFT-DFGNYSCVAENSMGKTRQ 92
K + R + ++I+ V C + GK+
Sbjct: 144 TNYSLKGCQGKPLPKDLRF--IPDPKAGIMIKSVKRAYHRLCLHCSVDQ-EGKSVL 196
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 50.0 bits (119), Expect = 3e-09
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 13/81 (16%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRR-------------HTLVIRKVLFTDFGNYSCVA 83
P++ W+ E + ++ + T+ I ++ D G Y C A
Sbjct: 50 VPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRA 109
Query: 84 ENSMGKTRQYLELSGKYPNAQ 104
N + K+ AQ
Sbjct: 110 SNDPDRNHLTRAPRVKWVRAQ 130
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1, isoform 2; hydrolase, immunoglobulin domain,
nucleus, protease; 2.80A {Homo sapiens}
Length = 218
Score = 51.0 bits (122), Expect = 3e-09
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 9/55 (16%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
Q W+K ++ G L+ V D G Y C N+
Sbjct: 48 VQYQWFKMNKEIPN---------GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFS 93
Score = 48.7 bits (116), Expect = 2e-08
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 9/52 (17%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
P W+K L L + ++ V G Y C N
Sbjct: 147 IPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRD 189
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 51.4 bits (122), Expect = 4e-09
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRR-----HTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
+IWY D E R L R L D GNY+C+ N+ ++
Sbjct: 48 LTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKV 107
Query: 93 YLELS 97
L
Sbjct: 108 AFPLE 112
Score = 47.9 bits (113), Expect = 5e-08
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH----------TLVIRKVLFTDFG-NYSCVAEN 85
R +V W + K D + H L I+KV D +Y C A +
Sbjct: 259 RNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARS 318
Query: 86 SMGKTRQYLELSGKYP 101
+ G+ + ++ K P
Sbjct: 319 AKGEVAKAAKVKQKVP 334
Score = 45.2 bits (106), Expect = 5e-07
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+P + WY K+ I E L L ++ GNY+CV
Sbjct: 154 KPTITWYMGCYKIQNFNNVIPE----GMNLSFLIALISNNGNYTCVVTYPEN 201
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 49.6 bits (118), Expect = 4e-09
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 9/63 (14%)
Query: 36 CRPQVIWYKETLKLDTT---------ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
+P + W+K + E +R + I K GNY C
Sbjct: 38 RKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYK 97
Query: 87 MGK 89
Sbjct: 98 DKF 100
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 51.1 bits (122), Expect = 4e-09
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRG--RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
V KL ++ + TL + +V F GNYSCVA N GK +
Sbjct: 217 FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF 276
Query: 96 L 96
Sbjct: 277 F 277
Score = 43.0 bits (101), Expect = 3e-06
Identities = 11/63 (17%), Positives = 16/63 (25%), Gaps = 5/63 (7%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
V W + + + G L F + G Y C + L
Sbjct: 31 SVEWDG-----PPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85
Query: 99 KYP 101
K P
Sbjct: 86 KDP 88
Score = 41.1 bits (96), Expect = 2e-05
Identities = 8/55 (14%), Positives = 13/55 (23%), Gaps = 2/55 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
V + + + H I + F +Y C A K
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYSFSP--WHGFTIHRAKFIQSQDYQCSALMGGRKVM 171
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 50.6 bits (121), Expect = 7e-09
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
Query: 34 AFCRPQVIWY--KETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+V E + + + G L +KV D G Y+C A
Sbjct: 272 QQGMTKVWVSPSNEQVLSQGSNGSVSVRNG---DLFFKKVQVEDGGVYTCYAMGETFNET 328
Query: 92 QYLEL 96
+EL
Sbjct: 329 LSVEL 333
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 48.1 bits (114), Expect = 9e-09
Identities = 11/63 (17%), Positives = 15/63 (23%), Gaps = 9/63 (14%)
Query: 36 CRPQVIWYK---ETLKLDTTERRIMETRGRR------HTLVIRKVLFTDFGNYSCVAENS 86
P V W+K L + + R L I G+Y C
Sbjct: 35 KPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTK 94
Query: 87 MGK 89
Sbjct: 95 DKF 97
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 48.0 bits (114), Expect = 1e-08
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 38 PQVIWYKETLKLDTTE------RRIMETRGRRHTLVIRKVLFTDFG-NYSCVAENSMGKT 90
++ W + L++ I G TL I ++ DF Y+C A NS G
Sbjct: 44 DRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD 103
Query: 91 RQYLELS 97
+ + L
Sbjct: 104 TEIIRLK 110
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 49.1 bits (117), Expect = 1e-08
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 38 PQVIWYKETLKLD-----TTERRIMETRGRRHTLVIRKVLFT-DFGNYSCVAENSMGKTR 91
P+ +W K+ + ++ R + + L I + T D G Y C A NS+G
Sbjct: 122 PEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSAS 181
Query: 92 QYLELS 97
L
Sbjct: 182 VSTVLR 187
Score = 43.7 bits (103), Expect = 1e-06
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 6/65 (9%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
W K ++L T + I K D G Y CV + + + +
Sbjct: 34 LMYSYWTKNGVELTATRKNASN-----MEYRINKPRAEDSGEYHCVY-HFVSAPKANATI 87
Query: 97 SGKYP 101
K
Sbjct: 88 EVKAA 92
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 49.7 bits (118), Expect = 1e-08
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 6/59 (10%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
W L + + L+IR V C N++G + L +
Sbjct: 249 GYNWSTTMGPL--PPFAVAQGA----QLLIRPVDKPINTTLICNVTNALGARQAELTVQ 301
Score = 43.5 bits (102), Expect = 2e-06
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSMGKT--RQ 92
Q+ W+ + + T + G ++ D N +C E+ +
Sbjct: 148 AQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLL 207
Query: 93 YLELSGKYPN 102
+ L+ YP
Sbjct: 208 TVNLTVYYPP 217
Score = 30.5 bits (68), Expect = 0.076
Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 18/72 (25%)
Query: 39 QVIWYKETLKLDTTERRIMETRG------------------RRHTLVIRKVLFTDFGNYS 80
Q+ W + + R +L + + D GNY+
Sbjct: 36 QLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYT 95
Query: 81 CVAENSMGKTRQ 92
C+ +R
Sbjct: 96 CLFVTFPQGSRS 107
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 49.6 bits (118), Expect = 1e-08
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 38 PQVIWYK---ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
+ K L++ + L + V F D G YSCVA N +G +
Sbjct: 216 GFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATM 275
Query: 95 ELS 97
Sbjct: 276 NFQ 278
Score = 45.7 bits (108), Expect = 4e-07
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
+ V +E + + + R +IRK D Y C +
Sbjct: 119 KDSVSLMREGGRQVLRKTVYFFSPWR--GFIIRKAKVLDSNTYVCKTMVN 166
Score = 42.2 bits (99), Expect = 5e-06
Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 7/58 (12%)
Query: 36 CRPQ--VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
C V W + ++ TL R F + G Y C
Sbjct: 26 CVSNGSVEWDG-----PISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGS 78
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 49.4 bits (117), Expect = 2e-08
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
+ WYK +L + ++ L+I D G Y C + + + +S
Sbjct: 159 NNITWYKNNQELIIDGTKYSQSGQ---NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS 215
Score = 42.9 bits (100), Expect = 3e-06
Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 6/65 (9%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGN-YSCVAENSMGKTR 91
+ W + + + + TL V GN Y+C N
Sbjct: 262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKT 321
Query: 92 QYLEL 96
+
Sbjct: 322 LTTTV 326
Score = 37.5 bits (86), Expect = 2e-04
Identities = 12/56 (21%), Positives = 14/56 (25%), Gaps = 6/56 (10%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGN-YSCVAENSMGKTRQ 92
V W K RR+ + L I D Y C G Q
Sbjct: 68 NVVNWEKIGKTRRPLNRRV-----KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQ 118
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 48.4 bits (115), Expect = 3e-08
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRH---------TLVIRKVLFTDFGNYSCVAENSMG 88
P+V W ++ L+ + + L I + +D G Y C+
Sbjct: 33 PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ 92
Query: 89 KT 90
Sbjct: 93 TF 94
Score = 44.5 bits (105), Expect = 6e-07
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
++W ++ + L T G + +L + + ++SC A N+ G T
Sbjct: 138 DLLWLQDAVPLATAPGH-----GPQRSLHVPGL--NKTSSFSCEAHNAKGVT 182
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 49.0 bits (116), Expect = 3e-08
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRR-------HTLVIRKVLFTDFGNYSCVAENSMGKT 90
P + W L+ T E L + + + GNY+ +A N G+
Sbjct: 276 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA 335
Query: 91 RQYLEL 96
+
Sbjct: 336 SASIMA 341
Score = 46.7 bits (110), Expect = 2e-07
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
Q W L+ T + + + N +C AEN +G+ +++
Sbjct: 187 LEQAGWILTELEQSATVMKSGGLPSLG-LTLANVTSDLNRKNVTCWAENDVGRAEVSVQV 245
Query: 97 SGKYPNAQ 104
+ +P +
Sbjct: 246 NVSFPASV 253
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 48.6 bits (115), Expect = 3e-08
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
+ W + + + +E + R + ++ G Y C A N +G +E++
Sbjct: 264 EYHWTTL----NGSLPKGVEAQNR-TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNI 318
Query: 99 KYP 101
Sbjct: 319 TEA 321
Score = 40.9 bits (95), Expect = 2e-05
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
V W LK + + I G + + +C+ M + ++ L
Sbjct: 166 SVVSWETR-LKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESL 224
Query: 95 ELSGKYP 101
L+ +Y
Sbjct: 225 TLNVQYE 231
Score = 35.5 bits (81), Expect = 0.001
Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 19/78 (24%)
Query: 39 QVIWYKETLKLDTT---------ERRIMETRGRRH---------TLVIRKVLFTDFGNYS 80
QV W K T + R R T+ + ++ D G Y
Sbjct: 49 QVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYI 108
Query: 81 CVAEN-SMGKTRQYLELS 97
C G L L+
Sbjct: 109 CEFATFPTGNRESQLNLT 126
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 45.8 bits (109), Expect = 4e-08
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 9/53 (16%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
P W+K L L T + ++ V G Y C N
Sbjct: 33 PHYQWFKNELPL---------THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 76
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 47.7 bits (113), Expect = 5e-08
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+ W + L TER + L I + D G Y C N + R
Sbjct: 139 ANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRR 190
Score = 33.9 bits (77), Expect = 0.004
Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 16/71 (22%)
Query: 38 PQVIWYKETLKLDTTE-----------RRIMETRGRR-----HTLVIRKVLFTDFGNYSC 81
WYK E GR +L+ + + D G Y+
Sbjct: 29 GAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL 88
Query: 82 VAENSMGKTRQ 92
+ + Q
Sbjct: 89 DMTDENYRRTQ 99
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 47.8 bits (113), Expect = 7e-08
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 7/67 (10%)
Query: 37 RPQVIWYKETLKL-------DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
+W K + + R R+ TL I D G + C A N+ G
Sbjct: 218 SVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGS 277
Query: 90 TRQYLEL 96
L
Sbjct: 278 ANVTTTL 284
Score = 38.9 bits (90), Expect = 9e-05
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 36 CR--PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
C V W +T + E + ++ + K T G Y+C N + +
Sbjct: 34 CIDPDFVRWTFKTYFNEMVENK-------KNEWIQEKAEATRTGTYTCSNSNGLTSS 83
Score = 31.2 bits (70), Expect = 0.038
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 3/49 (6%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFT-DFGNYSCVAEN 85
Q + K T+ + + I+ V C A+
Sbjct: 121 SQYSLIECDGKSLPTDLTF--VPNPKAGITIKNVKRAYHRLCVRCAAQR 167
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 47.4 bits (112), Expect = 7e-08
Identities = 8/61 (13%), Positives = 14/61 (22%), Gaps = 5/61 (8%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMGKTR 91
W + + + L I D G Y+C S+ +
Sbjct: 210 VVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQ 269
Query: 92 Q 92
Sbjct: 270 D 270
Score = 43.5 bits (102), Expect = 2e-06
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 36 CR--PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
C V+W + + + E + L + + D G Y C +S G
Sbjct: 22 CSGSAPVVWERMSQEPPQ-EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLET 78
Score = 27.7 bits (61), Expect = 0.61
Identities = 4/51 (7%), Positives = 12/51 (23%), Gaps = 9/51 (17%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
V +++ + R + + + +Y C
Sbjct: 124 LVVTLHEKK---GDVALPVPYDHQRGFSGIF------EDRSYICKTTIGDR 165
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 46.4 bits (109), Expect = 2e-07
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK-TRQYLE 95
+++W + E H + G Y C S + YL
Sbjct: 140 GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLY 199
Query: 96 L 96
L
Sbjct: 200 L 200
Score = 36.4 bits (83), Expect = 6e-04
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
+ W+K+ + I + + G Y C + K Q
Sbjct: 30 KNITWFKDG-------KMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQ 77
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 45.9 bits (109), Expect = 3e-07
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
V W + T + R TL V D G Y+C+ NS+G T
Sbjct: 370 TSVSWITPNGTVMTHGAY--KVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASA 427
Query: 95 ELS 97
L+
Sbjct: 428 TLN 430
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 44.4 bits (104), Expect = 4e-07
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 1 VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR 60
VIW K + + R + F + L +T R +ET
Sbjct: 50 VIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFD----------KKLLCETEGRVRVETT 99
Query: 61 GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
R + D G Y+ +N +G+ + L +
Sbjct: 100 KDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 45.5 bits (108), Expect = 4e-07
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 36 CR----PQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENS 86
CR V W + + R TL VL +D G Y+C+ N
Sbjct: 374 CRTPPMSSVKWLLPNGTVLSHA----SRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNV 429
Query: 87 MGKTRQYLEL 96
G + L
Sbjct: 430 AGNSNASAYL 439
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 43.9 bits (103), Expect = 1e-06
Identities = 9/59 (15%), Positives = 14/59 (23%), Gaps = 4/59 (6%)
Query: 37 RPQVIWYKE----TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P V W + E G V + +CV +N +
Sbjct: 133 HPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
Score = 39.6 bits (92), Expect = 3e-05
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 17/81 (20%)
Query: 38 PQVIWYK---------------ETLKLDTTERRI--METRGRRHTLVIRKVLFTDFGNYS 80
+V W+K + + ++ R + LV+ + GNY
Sbjct: 24 IEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYL 83
Query: 81 CVAENSMGKTRQYLELSGKYP 101
C + + + LS P
Sbjct: 84 CRMKLGETEVTKQEHLSVVKP 104
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 43.9 bits (104), Expect = 2e-06
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 34 AFCRPQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMG 88
P ++W ++ GR TL +R D G Y C+A N+ G
Sbjct: 411 GDPPPAILW-----LSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGG 465
Query: 89 KTRQYLEL 96
L
Sbjct: 466 NDSMPAHL 473
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 42.4 bits (99), Expect = 2e-06
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 10/70 (14%)
Query: 38 PQVIWY-----KETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSM 87
+ + + R + G TL I V +D G Y+C A + +
Sbjct: 38 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 97
Query: 88 GKTRQYLELS 97
+ +
Sbjct: 98 MTKKNSTFVR 107
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 42.7 bits (100), Expect = 3e-06
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 10/61 (16%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P V K + TL + ++ D G ++C + K +++
Sbjct: 126 SPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175
Query: 97 S 97
Sbjct: 176 V 176
Score = 39.6 bits (92), Expect = 4e-05
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 17/71 (23%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRH-----------------TLVIRKVLFTDFGNYS 80
Q W + T+G L+I+ + D Y
Sbjct: 25 IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 84
Query: 81 CVAENSMGKTR 91
C E+ + +
Sbjct: 85 CEVEDQKEEVQ 95
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 42.3 bits (99), Expect = 3e-06
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 38 PQVIWYKETLKLDTTERRIME-TRGRRH------TLVIRKVLFTDFGNYSCVAENSMGK- 89
+V W + + + +R++ + L I+ + D G Y+ ++ G
Sbjct: 28 DEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTR 87
Query: 90 -TRQYLELSGKYP 101
+ L+L
Sbjct: 88 ILNKALDLRILEM 100
Score = 31.5 bits (71), Expect = 0.024
Identities = 6/60 (10%), Positives = 19/60 (31%), Gaps = 11/60 (18%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
++ Y+ L + ++ M + + C A N + + + ++
Sbjct: 125 VELKLYQGKEHLRSLRQKTMSYQWTNLR-----------APFKCKAVNRVSQESEMEVVN 173
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 42.5 bits (99), Expect = 4e-06
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 10/61 (16%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P V K + TL + ++ D G ++C + K +++
Sbjct: 125 SPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 174
Query: 97 S 97
Sbjct: 175 V 175
Score = 41.7 bits (97), Expect = 9e-06
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 42 WYKETLKLDTTER----RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
+ + + + ++ + TL + GN + E GK Q + L
Sbjct: 231 LKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289
Score = 39.0 bits (90), Expect = 8e-05
Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 17/72 (23%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH-----------------TLVIRKVLFTDFGNY 79
Q W + T+G L+I+ + D Y
Sbjct: 23 SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82
Query: 80 SCVAENSMGKTR 91
C E+ + +
Sbjct: 83 ICEVEDQKEEVQ 94
Score = 27.8 bits (61), Expect = 0.68
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
P+++ +LKL+ E ++ + VL + G + C+ +S
Sbjct: 311 PKLML---SLKLENKEAKVSKR------EKAVWVLNPEAGMWQCLLSDS 350
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 41.3 bits (97), Expect = 5e-06
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLF-----TDFGNYSCVAENS 86
P + WYK +++T + + R R +L +++ D G Y CVA N
Sbjct: 38 TPTIEWYKGGERVETDKD---DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNY 94
Query: 87 MG 88
+G
Sbjct: 95 LG 96
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 42.3 bits (98), Expect = 7e-06
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
V+ + E RI+ + ++VI + D G Y C A +
Sbjct: 260 NCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGS 319
Query: 94 LELSGKYP 101
+ +
Sbjct: 320 PIQAWQLF 327
Score = 36.9 bits (84), Expect = 4e-04
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 18 IETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER---RIMETRGRRHTLVIRKVLFT 74
+T + + VI + + T R I T ++VI ++ +
Sbjct: 136 FKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLS 195
Query: 75 DFGNYSCVAENSMGKTRQYLELSGKYP 101
D G Y C A + ++ +L P
Sbjct: 196 DAGQYLCQAGDDSNSNKKNADLQVLKP 222
Score = 33.8 bits (76), Expect = 0.005
Identities = 8/63 (12%), Positives = 16/63 (25%), Gaps = 7/63 (11%)
Query: 37 RPQVIWYKETLKLDTTERR-------IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
+ W + ++ + R +L + V D G Y C +
Sbjct: 475 KYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFY 534
Query: 90 TRQ 92
Sbjct: 535 GET 537
Score = 31.1 bits (69), Expect = 0.049
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRH--TLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
P ++ + +K R + T+++ ++ D G Y C+
Sbjct: 378 PLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTV 435
Score = 30.4 bits (67), Expect = 0.087
Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 16/69 (23%)
Query: 38 PQVIWYKETLKLD------TTERRIMETRGRRH----------TLVIRKVLFTDFGNYSC 81
+ W ++ + + + GR + + I ++ D G Y C
Sbjct: 33 TRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKC 92
Query: 82 VAENSMGKT 90
+
Sbjct: 93 GLGINSRGL 101
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 42.0 bits (98), Expect = 7e-06
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 15/65 (23%)
Query: 38 PQVIWYKE-TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P++ K+ T L E V G Y C A ++ G+ + + +
Sbjct: 215 PELKCLKDGTFPLPIGE--------------SVTVTRDLEGTYLCRARSTQGEVTREVTV 260
Query: 97 SGKYP 101
+ P
Sbjct: 261 NVLSP 265
Score = 28.5 bits (63), Expect = 0.41
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 12/69 (17%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG----KTRQ 92
P+ + G R L+++ + ++SC A + Q
Sbjct: 123 HPRAKVTLNGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 174
Query: 93 YLELSGKYP 101
EL Y
Sbjct: 175 TRELRVLYG 183
Score = 26.2 bits (57), Expect = 2.3
Identities = 6/65 (9%), Positives = 17/65 (26%), Gaps = 1/65 (1%)
Query: 33 FAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
F QV +L+ T ++ + ++ + +C
Sbjct: 31 FPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLTCAVILGNQSQET 89
Query: 93 YLELS 97
++
Sbjct: 90 LQTVT 94
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 41.8 bits (98), Expect = 8e-06
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 8/64 (12%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
V++Y+ + + L I K + G Y C T + ++
Sbjct: 113 YNVLYYRN--------GKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVT 164
Query: 98 GKYP 101
K
Sbjct: 165 VKEL 168
Score = 40.7 bits (95), Expect = 2e-05
Identities = 11/57 (19%), Positives = 15/57 (26%), Gaps = 4/57 (7%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
RP + Y + + R I D G Y C A G +
Sbjct: 200 RPGLQLYFSFYM----GSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKR 252
Score = 37.2 bits (86), Expect = 3e-04
Identities = 11/69 (15%), Positives = 16/69 (23%), Gaps = 10/69 (14%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
W+ T+ + I D G Y C S LE+
Sbjct: 32 SSTQWFLNGTATQTSTP----------SYRITSASVNDSGEYRCQRGLSGRSDPIQLEIH 81
Query: 98 GKYPNAQEP 106
+ Q
Sbjct: 82 RGWLLLQVS 90
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 41.3 bits (97), Expect = 8e-06
Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 8/54 (14%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+V +++ + + T I + + G+Y C
Sbjct: 116 VKVTFFQN--------GKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFS 161
Score = 37.9 bits (88), Expect = 1e-04
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
+ W+ + T + K D G Y+C + +L +
Sbjct: 35 DSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL 84
Query: 98 GKYPNAQEP 106
++ Q P
Sbjct: 85 FEWLVLQTP 93
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 41.7 bits (97), Expect = 8e-06
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 37 RPQVIWY--------KETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
W K+ + D + E + TL I V +D G Y+C A + +
Sbjct: 136 GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM 195
Query: 89 KTRQ 92
+
Sbjct: 196 TKKN 199
Score = 34.0 bits (77), Expect = 0.005
Identities = 5/52 (9%), Positives = 12/52 (23%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
V + + + I + + G C A+ +
Sbjct: 37 NLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDE 88
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 41.2 bits (96), Expect = 9e-06
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
+V W ++ +T+ R E G + ++ N+SC+ N+ K
Sbjct: 132 LAEVSWQNVSVPANTSHIRTPE--GLYQVTSVLRLKPQPSRNFSCMFWNAHMKELT 185
Score = 35.0 bits (80), Expect = 0.002
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 9/73 (12%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGR---------RHTLVIRKVLFTDFGNYSCVAENSMG 88
++ + +L+ + + R + I V D G Y C+
Sbjct: 32 TELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAA 91
Query: 89 KTRQYLELSGKYP 101
+YL + K
Sbjct: 92 WDYKYLTVKVKAS 104
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 40.3 bits (94), Expect = 2e-05
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 8/54 (14%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+VI+YK+ ++ H + I D G Y C +
Sbjct: 116 YKVIYYKD--------GEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYE 161
Score = 39.5 bits (92), Expect = 4e-05
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 10/69 (14%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
W+ + T +L I F D G Y C + YLE+
Sbjct: 35 SSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVF 84
Query: 98 GKYPNAQEP 106
+ Q
Sbjct: 85 SDWLLLQAS 93
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 40.1 bits (93), Expect = 3e-05
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P W + +D+ + G TL + V F + +Y C A K + +++
Sbjct: 30 SPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86
Score = 33.2 bits (75), Expect = 0.006
Identities = 9/76 (11%), Positives = 20/76 (26%), Gaps = 11/76 (14%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRG----RRHTLVIRKVLFTDFGNYSCVAENSMGKT-- 90
R ++ K + + E R + + V+ C A+ + +
Sbjct: 123 RLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS 182
Query: 91 -----RQYLELSGKYP 101
+ EL
Sbjct: 183 VPTVRQAVKELQVYIS 198
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 39.0 bits (90), Expect = 3e-05
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Query: 36 CRPQVIWYKET---LKLDTTERRIMETRGRRHT------LVIRKVLFTDFGNYSCVAENS 86
+P + W+K L + R + + L I KV+ D G Y +
Sbjct: 43 DKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAK 102
Query: 87 MGKTRQYLELSGKYP 101
+ + P
Sbjct: 103 DTCDSCGFNIDVEAP 117
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 39.5 bits (92), Expect = 4e-05
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 9/64 (14%)
Query: 38 PQVIWYKETLKLDTTE----RRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMG 88
+ W K + K + + + + TL I+ + D Y ++ G
Sbjct: 31 DDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKG 90
Query: 89 KTRQ 92
K
Sbjct: 91 KNVL 94
Score = 37.2 bits (86), Expect = 3e-04
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
P++ Y++ L ++R ++ K + + C A N + K +S
Sbjct: 130 PELNLYQDGKHLKLSQR-----------VITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 39.1 bits (90), Expect = 7e-05
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 15/65 (23%)
Query: 38 PQVIWYKE-TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P++ K+ T L E V G Y C A ++ G+ + + +
Sbjct: 400 PELKCLKDGTFPLPIGE--------------SVTVTRDLEGTYLCRARSTQGEVTREVTV 445
Query: 97 SGKYP 101
+ P
Sbjct: 446 NVLSP 450
Score = 32.9 bits (74), Expect = 0.011
Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 3/52 (5%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
V+ + +L R T + N+SC E +
Sbjct: 118 NLTVVLLRGEKELK---REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLR 166
Score = 31.4 bits (70), Expect = 0.045
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 14/69 (20%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG----KTRQ 92
R +V + G R L+++ + ++SC A + Q
Sbjct: 310 RAKVTLNGVPA----------QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 359
Query: 93 YLELSGKYP 101
EL Y
Sbjct: 360 TRELRVLYG 368
Score = 27.1 bits (59), Expect = 1.2
Identities = 6/57 (10%), Positives = 16/57 (28%)
Query: 45 ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYP 101
L ++T + + V + C + G++ L+ +
Sbjct: 29 MLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWT 85
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 39.1 bits (90), Expect = 8e-05
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
V W + R G L++R V D GNYSC
Sbjct: 37 ATVHWVLRKPAAGSHPSRWA---GMGRRLLLRSVQLHDSGNYSCYRAGR 82
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 39.2 bits (90), Expect = 8e-05
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA-ENSMGKTRQYLE 95
W + + E + L I + +G+Y C A E S + Q+ +
Sbjct: 528 HATYSWRHKENVEQSCEPGH---QSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHWQ 584
Query: 96 L 96
L
Sbjct: 585 L 585
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 37.3 bits (86), Expect = 1e-04
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 11/59 (18%)
Query: 38 PQVIWYKETLKLDTTE----------RRIMETRGRRHTLVIRKVLFTDFGNY-SCVAEN 85
Q W+ +L + E R +E +G +H L++ V D G
Sbjct: 36 IQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPG 94
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 37.9 bits (87), Expect = 2e-04
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
++ ++ V +D G Y+C ++R+ + L
Sbjct: 202 SIKLQTVKESDQGIYTCSIYVGKLESRKTIVLH 234
Score = 36.0 bits (82), Expect = 8e-04
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 20/71 (28%)
Query: 38 PQVIWYKETLKLDTTERRIM----------ETRGRRH----------TLVIRKVLFTDFG 77
+V W K D +E + + R H +L+++ V D G
Sbjct: 38 DRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEG 97
Query: 78 NYSCVAENSMG 88
Y+C
Sbjct: 98 IYTCEIRLKNE 108
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 38.2 bits (88), Expect = 2e-04
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 38 PQVIWYKETLKL---DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+ + + + E ++ +R + + D G Y C+ G
Sbjct: 194 AGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG 247
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 38.0 bits (87), Expect = 2e-04
Identities = 13/77 (16%), Positives = 18/77 (23%), Gaps = 21/77 (27%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH---------------------TLVIRKVLFTD 75
V WY + E + ++ LVIR TD
Sbjct: 165 NANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITD 224
Query: 76 FGNYSCVAENSMGKTRQ 92
G C G+
Sbjct: 225 AGRVWCELATGQGELDA 241
Score = 36.0 bits (82), Expect = 7e-04
Identities = 13/91 (14%), Positives = 22/91 (24%), Gaps = 10/91 (10%)
Query: 1 VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR 60
+ W K D + + + + F + + R
Sbjct: 37 ISWLKGA-SPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLG---------RASVAN 86
Query: 61 GRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
TL + V D G Y C +T
Sbjct: 87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 117
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 37.7 bits (87), Expect = 2e-04
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 37 RPQVIWYK---ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
+ +VIW + L TT + ++ T + C +
Sbjct: 145 KAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHT 204
Query: 94 LELS 97
EL
Sbjct: 205 AELV 208
Score = 27.7 bits (61), Expect = 0.64
Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 6/98 (6%)
Query: 10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIR 69
LD + ++ + F + Q Y++ +L + L I
Sbjct: 31 LDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQ-----LSLGNAALQIT 85
Query: 70 KVLFTDFGNYSCVAENSMGKTRQ-YLELSGKYPNAQEP 106
V D G Y C+ ++ ++++ Y +
Sbjct: 86 DVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQR 123
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 37.1 bits (85), Expect = 4e-04
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 11/49 (22%)
Query: 42 WYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
W K +DTT + I++ G Y+ +
Sbjct: 134 WSKGEDVIDTT-----------QDITIQEFTADKNGVYTVKVWGESEDS 171
Score = 36.0 bits (82), Expect = 9e-04
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGK 99
L + D + CVA+ + +E++
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQIEDETVEVAAS 293
Score = 33.6 bits (76), Expect = 0.006
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 10/51 (19%)
Query: 40 VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
W K+ + TL + + G+Y +++ T
Sbjct: 38 YTWTKDDQPHE----------NNTATLTVADATSENAGSYKVTVQDTDTMT 78
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 36.8 bits (85), Expect = 4e-04
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 8/54 (14%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+V + + + + I K D G+Y C
Sbjct: 119 HKVTYLQN--------GKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVS 164
Score = 36.0 bits (83), Expect = 6e-04
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 10/68 (14%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
W+ + + + I D G Y C S LE+
Sbjct: 39 STQWFHNESLISSQAS----------SYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHI 88
Query: 99 KYPNAQEP 106
+ Q P
Sbjct: 89 GWLLLQAP 96
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 36.0 bits (82), Expect = 6e-04
Identities = 10/80 (12%), Positives = 19/80 (23%), Gaps = 7/80 (8%)
Query: 13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVL 72
+ +++ G R + W K+ I ++T +
Sbjct: 109 KAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDG-------SIISPLNATKNTWNLGNNA 161
Query: 73 FTDFGNYSCVAENSMGKTRQ 92
G Y C Q
Sbjct: 162 KDPRGTYQCQGAKETSNPLQ 181
Score = 30.6 bits (68), Expect = 0.054
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 10/58 (17%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFT-DFGNYSCVAENSMGKTRQYL 94
+ W K +L + LV++ D G Y C S T YL
Sbjct: 27 ENLKWEKNGQELPQKHDK---------HLVLQDFSEVEDSGYYVCYTPASNKNTYLYL 75
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 35.0 bits (80), Expect = 8e-04
Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRH--------TLVIRKVLFTDFGNYSCVAENSMGKT 90
W + L E + L +R V FT G Y CV N G +
Sbjct: 43 TFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSS 102
Query: 91 R 91
Sbjct: 103 Y 103
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 36.3 bits (82), Expect = 9e-04
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 37 RPQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA-ENSMGKTRQY 93
+V W + LK ++ + +M + L+I + D G Y C++ E KT
Sbjct: 561 LARVFWKFQNGVLKAESPKYGLMGRKN----LLIFNLSEGDSGVYQCLSEERVKNKTVFQ 616
Query: 94 LELS 97
+
Sbjct: 617 VVAK 620
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 35.6 bits (82), Expect = 9e-04
Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 10/68 (14%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
W+ + + + I D G Y C + S LE+
Sbjct: 39 STQWFHNESLISSQAS----------SYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHI 88
Query: 99 KYPNAQEP 106
+ Q P
Sbjct: 89 GWLLLQAP 96
Score = 35.2 bits (81), Expect = 0.001
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 8/54 (14%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+V + + + + I K D G+Y C
Sbjct: 119 HKVTYLQN--------GKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVS 164
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 35.1 bits (80), Expect = 0.002
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 37 RPQVIWYKETLK--LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
+PQ+ W + + + G + + SC +S+ +
Sbjct: 148 QPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTA 207
Query: 95 ELS 97
+S
Sbjct: 208 SIS 210
Score = 26.6 bits (58), Expect = 1.5
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
L I V +D G Y C ++ + +EL
Sbjct: 84 ALRIHNVTASDSGKYLCYFQDGDFYEKALVEL 115
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 33.9 bits (77), Expect = 0.005
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
Q+ W+ + + T + G ++ D +C E+ + Q L
Sbjct: 147 AQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLL 206
Query: 95 E--LSGKYP 101
L+ YP
Sbjct: 207 TVSLTVYYP 215
Score = 26.2 bits (57), Expect = 2.1
Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 5/73 (6%)
Query: 20 TRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNY 79
R + FH + + + +L + + D G+Y
Sbjct: 39 ARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRD-----ASLRMFGLRVEDEGSY 93
Query: 80 SCVAENSMGKTRQ 92
+C+ +R
Sbjct: 94 TCLFVTFPQGSRS 106
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 33.4 bits (76), Expect = 0.005
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 38 PQVIWYKETLKLDTTERRIMET----RGRRH------TLVIRKVLFTDFGNYSCVAENSM 87
+V+W K+ K+ E + R + +L I + +D Y + N
Sbjct: 24 KEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT 83
Query: 88 GKTRQYL 94
+ +L
Sbjct: 84 DTMKFFL 90
Score = 26.8 bits (59), Expect = 1.1
Identities = 5/54 (9%), Positives = 13/54 (24%), Gaps = 11/54 (20%)
Query: 36 CRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
++ Y+ L + + + C A N + +
Sbjct: 118 TDVELKLYQGKEHLRSL-----------RQKTMSYQWTNLRAPFKCKAVNRVSQ 160
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 33.0 bits (74), Expect = 0.010
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
V W LDT+ + ++ R L +R + G CV + ++L
Sbjct: 38 ASVQWRG----LDTSLGAV-QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL 92
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 31.9 bits (72), Expect = 0.013
Identities = 9/54 (16%), Positives = 23/54 (42%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
I+ E L ++ +++ + ++ + V D G Y C+ + T++
Sbjct: 41 FTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKE 94
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 32.0 bits (72), Expect = 0.019
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+ + + L + RG T + N+SC AE +
Sbjct: 121 SLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 31.4 bits (71), Expect = 0.032
Identities = 5/62 (8%), Positives = 16/62 (25%), Gaps = 11/62 (17%)
Query: 36 CRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
++ Y+ L + + + C A N + + +
Sbjct: 128 TDVELKLYQGKEHLRSL-----------RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEV 176
Query: 96 LS 97
++
Sbjct: 177 VN 178
Score = 27.5 bits (61), Expect = 0.60
Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 13/69 (18%)
Query: 38 PQVIWYKETLKLDTTERRIMET-------RGRRH------TLVIRKVLFTDFGNYSCVAE 84
++ W T + + + R L I V D G+Y
Sbjct: 30 QRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRML 89
Query: 85 NSMGKTRQY 93
+ +
Sbjct: 90 HETEDQWKI 98
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 30.3 bits (68), Expect = 0.052
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 11/70 (15%)
Query: 39 QVIWYKETLKLDT----TERRIMETRGRRH------TLVIRKVLFTDFGNYSC-VAENSM 87
QV W ++ L I + R L ++ + D G Y C
Sbjct: 36 QVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPD 95
Query: 88 GKTRQYLELS 97
G + L
Sbjct: 96 GTYTGRIFLE 105
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 30.9 bits (69), Expect = 0.055
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 19/93 (20%)
Query: 1 VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR 60
+ W+ R+ + L H DT R
Sbjct: 33 LEWFLTDR--SGARPRLASAEMQGSELQVTMH-----------------DTRGRSPPYQL 73
Query: 61 GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
+ LV+ + D +Y CV T +
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEA 106
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 29.8 bits (67), Expect = 0.074
Identities = 8/69 (11%), Positives = 20/69 (28%), Gaps = 10/69 (14%)
Query: 38 PQVIWYKETLKLDTTER---------RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+ W + + ++ ++ + V +D G Y+C +M
Sbjct: 36 TSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSL-FTMP 94
Query: 89 KTRQYLELS 97
L+
Sbjct: 95 VKTSKAYLT 103
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 29.4 bits (65), Expect = 0.11
Identities = 7/56 (12%), Positives = 14/56 (25%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
+++W + E H + G Y C S + +
Sbjct: 34 SEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 89
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 29.1 bits (64), Expect = 0.14
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 16/64 (25%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHT------------LVIRKVLFTDFGNYSCVAE 84
RP V W K + T +E + +T L + + +D G+YSC
Sbjct: 44 RPNVTWCK----HNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN 99
Query: 85 NSMG 88
+
Sbjct: 100 FNSQ 103
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 28.3 bits (63), Expect = 0.30
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 12/66 (18%)
Query: 39 QVIWYK----ETLKLDTTERRIMET--RGRRH------TLVIRKVLFTDFGNYSCVAENS 86
Q+ W+ + ++ D+ + + E+ +GR L I KV D Y
Sbjct: 36 QLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKK 95
Query: 87 MGKTRQ 92
G ++
Sbjct: 96 TGNEQE 101
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 28.5 bits (62), Expect = 0.32
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 9/53 (16%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
+ W + E G TL I+ F D G Y+C +
Sbjct: 34 DGITWTLDQ---------SSEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSH 77
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 27.9 bits (62), Expect = 0.35
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 14/73 (19%)
Query: 35 FCRPQVIWYKETLKLDTTERRIMETRGRRH-----------TLVIRKVLFTDFGNYSCVA 83
+I Y + + +GR H ++ + + +D G Y C
Sbjct: 52 KVDQVIILYSGD---KIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKV 108
Query: 84 ENSMGKTRQYLEL 96
+ + G + + L
Sbjct: 109 KKAPGVANKKIHL 121
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 28.3 bits (63), Expect = 0.38
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 40 VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
KE +R+ + I + G Y C + +G
Sbjct: 35 YRLDKEE-SPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG 82
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 28.0 bits (62), Expect = 0.48
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 20/78 (25%)
Query: 39 QVIWYKETLKL---------DTTERRIMETRGRRH-----------TLVIRKVLFTDFGN 78
+V WY+ D + E RGR L I+ V F+D G
Sbjct: 40 EVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGG 99
Query: 79 YSCVAENSMGKTRQYLEL 96
Y+C + + +EL
Sbjct: 100 YTCFFRDHSYQEEAAVEL 117
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 28.0 bits (62), Expect = 0.50
Identities = 10/79 (12%), Positives = 18/79 (22%), Gaps = 15/79 (18%)
Query: 38 PQVIWYKETLKL------DTTERRIMETRGRRH---------TLVIRKVLFTDFGNYSCV 82
+ W L +T I T ++ +L + + D G+Y
Sbjct: 29 NFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQ 88
Query: 83 AENSMGKTRQYLELSGKYP 101
L
Sbjct: 89 ISTKTSAKLSSYTLRILRQ 107
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 28.0 bits (62), Expect = 0.51
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 2/52 (3%)
Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
P + W + E L T T ++ C+ +
Sbjct: 136 EPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYG 187
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 27.4 bits (60), Expect = 0.70
Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 55 RIMETRGRRHTLVIRKVLFTDFGNYSC-VAENSMGKTRQYLE 95
+++ + ++ I V D G Y+C + + + +
Sbjct: 94 QLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVT 135
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL;
2.80A {Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 27.1 bits (59), Expect = 0.74
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 34 AFC--RPQVIWYK-ETLKLDTTERRIMETRGRRHT----LVIRKVLFTDFGNYSCVAENS 86
+C RP V W K E R + ++ L VL D G+Y C A
Sbjct: 36 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ 95
Query: 87 MG 88
Sbjct: 96 SN 97
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 27.5 bits (61), Expect = 0.74
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 40 VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
+ E L +R R + I + G YSC+ +
Sbjct: 34 YQLHFE-GSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWS 83
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 27.1 bits (59), Expect = 1.0
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 40 VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFG-NYSCVAENSMG 88
V+ + +L LV R G N+SC E +
Sbjct: 121 VVLLRGEKELKREPAVGEPAEVTTTVLVRRD----HHGANFSCRTELDLR 166
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1;
immunoglobulin-like folds, immune system; 1.80A {Homo
sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A
1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 26.7 bits (59), Expect = 1.2
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 40 VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
Y+E K RI + ++ I + + G Y C +
Sbjct: 35 YRLYREK-KTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD 80
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 26.8 bits (59), Expect = 1.3
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+ KE + + + + I + G Y C + G
Sbjct: 34 EYRLVKEG-SPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAG 82
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 26.5 bits (58), Expect = 1.5
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSMG 88
++VI + ++D G ++C +N
Sbjct: 82 SIVIHNLDYSDNGTFTCDVKNPPD 105
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 26.0 bits (57), Expect = 1.7
Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 9/66 (13%)
Query: 34 AFCRPQVIWYKETLKLDTTERRIMETR---------GRRHTLVIRKVLFTDFGNYSCVAE 84
+P + Y + T + + ++ L + K + G Y C
Sbjct: 46 KLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVI 105
Query: 85 NSMGKT 90
++
Sbjct: 106 SNSVMY 111
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 26.1 bits (57), Expect = 1.9
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 18/77 (23%)
Query: 37 RPQVIWYKETLKLDTT---------ERRIMETRGRRH---------TLVIRKVLFTDFGN 78
+ V W T + + RGR +L I + D +
Sbjct: 33 QVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQMDDRNH 92
Query: 79 YSCVAENSMGKTRQYLE 95
Y+C Q +
Sbjct: 93 YTCEVTWQTPDGNQVIR 109
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 26.0 bits (57), Expect = 2.3
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 41 IWYKETLKLDTTERRIMETRGRRH-TLVIRKVLFTDFGNYSCVAENS 86
+KE + D + G I ++ G Y C +
Sbjct: 150 FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVT 196
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 26.0 bits (56), Expect = 2.3
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 19/76 (25%)
Query: 39 QVIWYKETLKLDTTERRI---------METRGRRH----------TLVIRKVLFTDFGNY 79
V W+++ E ET+GR +L I D G+Y
Sbjct: 38 YVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSY 97
Query: 80 SCVAENSMGKTRQYLE 95
E Y +
Sbjct: 98 FFRVERGRDVKYSYQQ 113
Score = 25.6 bits (55), Expect = 3.2
Identities = 6/53 (11%), Positives = 10/53 (18%), Gaps = 6/53 (11%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
W L R L + N +C + +
Sbjct: 157 LTFSWTGNALSPLDP------ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQV 203
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 25.3 bits (55), Expect = 2.7
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 20/86 (23%)
Query: 1 VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR 60
+ W K ++ T R T + LK D + +
Sbjct: 29 MCWGKGFCPWSQCTNELLRTDERNVTYQKSSRY------------QLKGDLNKGDV---- 72
Query: 61 GRRHTLVIRKVLFTDFGNYSCVAENS 86
+L+I+ V D G Y C +
Sbjct: 73 ----SLIIKNVTLDDHGTYCCRIQFP 94
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 25.6 bits (55), Expect = 2.9
Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 10/98 (10%)
Query: 1 VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR 60
+ W K D + + + + F + + R
Sbjct: 39 ISWLKGA-SPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFL---------GRASVAN 88
Query: 61 GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
TL + V D G Y C +T L+
Sbjct: 89 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKS 126
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 3.1
Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 24/114 (21%)
Query: 1 VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE---RRIM 57
+ W LK + ++E L++ + L++ + + RR++
Sbjct: 184 IFWL--NLKNCNSPETVLE---MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 58 ETRGRRHTLVI------RKVL--FTDFG-------NYSCVAENSMGKTRQYLEL 96
+++ + L++ K F + + V + T ++ L
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISL 291
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 24.7 bits (54), Expect = 5.9
Identities = 10/50 (20%), Positives = 13/50 (26%), Gaps = 5/50 (10%)
Query: 61 GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY----LELSGKYPNAQEP 106
+ I D G Y C A + K + EL E
Sbjct: 80 RHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVT-ERILET 128
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 24.6 bits (53), Expect = 6.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 65 TLVIRKVLFTDFGNYSC 81
TL + + D GNY+C
Sbjct: 94 TLALHGLTVEDEGNYTC 110
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 24.5 bits (53), Expect = 7.2
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 20/86 (23%)
Query: 1 VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR 60
W + + +I T G R T + LK +E +
Sbjct: 30 TCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRY------------NLKGHISEGDV---- 73
Query: 61 GRRHTLVIRKVLFTDFGNYSCVAENS 86
+L I + +D G Y C E
Sbjct: 74 ----SLTIENSVESDSGLYCCRVEIP 95
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 24.3 bits (53), Expect = 8.2
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 60 RGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+ I D G Y C A + K +
Sbjct: 69 NRHDFHMNILDTRRNDSGIYLCGAISLHPKLK 100
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 24.3 bits (52), Expect = 9.2
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+ ++ ETL +T + + T N+SC+A +
Sbjct: 120 SLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.434
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,588,546
Number of extensions: 81431
Number of successful extensions: 753
Number of sequences better than 10.0: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 397
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.0 bits)