RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17205
(106 letters)
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 48.3 bits (114), Expect = 2e-09
Identities = 12/60 (20%), Positives = 22/60 (36%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
W K ++ +E +E L I G Y+ + EN +G + + L+
Sbjct: 30 ITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 89
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 47.8 bits (112), Expect = 7e-09
Identities = 13/86 (15%), Positives = 27/86 (31%)
Query: 12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKV 71
++ I + + + L +T R +ET R +
Sbjct: 42 IWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGA 101
Query: 72 LFTDFGNYSCVAENSMGKTRQYLELS 97
D G Y+ +N +G+ + L +
Sbjct: 102 EKEDEGVYTVTVKNPVGEDQVNLTVK 127
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 45.6 bits (107), Expect = 2e-08
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 37 RPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K + R + R + +L++ V+ +D GNY+CV EN G
Sbjct: 34 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 93
Query: 96 LS 97
L
Sbjct: 94 LD 95
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 42.6 bits (99), Expect = 3e-07
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P V W+K+ +L + + + G + L I +V D G Y+ A+NS G + + L
Sbjct: 30 PPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 89
Query: 97 S 97
+
Sbjct: 90 N 90
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 40.9 bits (95), Expect = 1e-06
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P V+W L + + LVI+ V D G Y C A N G +
Sbjct: 32 APNVVWSHNAKPLSGGRATVTD-----SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 86
Query: 97 S 97
Sbjct: 87 Q 87
>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 105
Score = 40.0 bits (92), Expect = 4e-06
Identities = 14/80 (17%), Positives = 20/80 (25%), Gaps = 1/80 (1%)
Query: 12 TTERRIIETR-GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRK 70
ER ++ G + W L I K
Sbjct: 8 AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAK 67
Query: 71 VLFTDFGNYSCVAENSMGKT 90
+D GNYSC A + +
Sbjct: 68 TEASDLGNYSCFATSHIDFI 87
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 39.1 bits (90), Expect = 6e-06
Identities = 17/82 (20%), Positives = 22/82 (26%), Gaps = 3/82 (3%)
Query: 9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVI 68
+ + G TL V W + R R L++
Sbjct: 8 AQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR---LLL 64
Query: 69 RKVLFTDFGNYSCVAENSMGKT 90
R V D GNYSC T
Sbjct: 65 RSVQLHDSGNYSCYRAGRPAGT 86
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 38.8 bits (89), Expect = 1e-05
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 20 TRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRG--------RRHTLVIRKV 71
T G R L H + W+K+ + + T + + + L+ V
Sbjct: 15 TIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV 74
Query: 72 LFTDFGNYSCVAENSMGKTR 91
D G Y C A+N G
Sbjct: 75 TAFDSGEYYCQAQNGYGTAM 94
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 38.4 bits (88), Expect = 2e-05
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 7/85 (8%)
Query: 24 RHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIM-------ETRGRRHTLVIRKVLFTDF 76
H I F P + W L+ T R L + + +
Sbjct: 16 HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 75
Query: 77 GNYSCVAENSMGKTRQYLELSGKYP 101
GNY+ +A N G+ + +
Sbjct: 76 GNYTLLAANPFGQASASIMAAFMDN 100
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 37.9 bits (87), Expect = 2e-05
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 25 HTLIFFFHFAFCRPQVIWYKETLK--LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCV 82
+ + V W+K + R + G++H L+I D YS +
Sbjct: 16 ERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVM 75
Query: 83 AENSMGKTRQYLEL 96
+ ++L
Sbjct: 76 TTGGQSSAKLSVDL 89
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 91
Score = 37.5 bits (86), Expect = 2e-05
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P V W ++ L T+ R + T + T I V +D GNYS V ENS GK L
Sbjct: 28 VPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 87
Query: 97 S 97
+
Sbjct: 88 T 88
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 37.6 bits (86), Expect = 2e-05
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 38 PQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P + W K+ + + + + L ++ V +D G Y C E+
Sbjct: 26 PDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI 81
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 37.7 bits (86), Expect = 3e-05
Identities = 9/79 (11%), Positives = 16/79 (20%)
Query: 19 ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGN 78
G + + + K L + ++ L I G
Sbjct: 27 RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGG 86
Query: 79 YSCVAENSMGKTRQYLELS 97
Y C L+
Sbjct: 87 YRCEVSTKDKFDCSNFNLT 105
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 37.3 bits (85), Expect = 5e-05
Identities = 11/66 (16%), Positives = 17/66 (25%)
Query: 32 HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+ + + K L E +R + I K GNY C
Sbjct: 36 KWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDS 95
Query: 92 QYLELS 97
+L
Sbjct: 96 CSFDLE 101
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 37.3 bits (85), Expect = 5e-05
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 37 RPQVIWYKETLKLDTTE-------------RRIMETRGRRHTLVIRKVLFTDFGNYSCVA 83
+P + W K K + + T L IR V F D G Y+C+A
Sbjct: 34 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 93
Query: 84 ENSMGKTRQYLELS 97
NS+G + L+
Sbjct: 94 GNSIGISFHSAWLT 107
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 35.8 bits (81), Expect = 1e-04
Identities = 12/60 (20%), Positives = 20/60 (33%)
Query: 32 HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
+ +K+ K + R +LV + +D G+Y C AE G
Sbjct: 26 IEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVAS 85
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 36.0 bits (82), Expect = 1e-04
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 38 PQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P + W K+ ++ + + L IR V D Y C+AEN G+ +
Sbjct: 35 PTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIH 94
Query: 96 LS 97
L
Sbjct: 95 LK 96
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 35.6 bits (81), Expect = 1e-04
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
PQ+ W K + + L I+ V F D G Y C AEN G+ +
Sbjct: 34 VPQIKWRKLD------GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87
Query: 97 S 97
Sbjct: 88 I 88
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 35.8 bits (81), Expect = 2e-04
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 38 PQVIWYKETLK---LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+ + + E ++ +R + + D G Y C+ G
Sbjct: 31 AGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG 84
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 98
Score = 35.6 bits (81), Expect = 2e-04
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGR-RHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
P+ WYK +K++ ++R LVIR V D + A N G+T +
Sbjct: 33 DPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF 92
Query: 96 LS 97
L
Sbjct: 93 LL 94
>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2
(ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 35.7 bits (81), Expect = 2e-04
Identities = 7/67 (10%), Positives = 15/67 (22%), Gaps = 2/67 (2%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGR--RHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
+ ++ L + T N+SC+A + +
Sbjct: 34 SLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNI 93
Query: 95 ELSGKYP 101
P
Sbjct: 94 FHKHSAP 100
>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 35.3 bits (80), Expect = 2e-04
Identities = 13/60 (21%), Positives = 20/60 (33%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
+ WYK+ K + + + L D G+Y CV NS R +
Sbjct: 33 GTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK 92
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)
[TaxId: 9103]}
Length = 102
Score = 35.3 bits (80), Expect = 3e-04
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 36 CRPQVIWYKETLKLDTTERRIMETRGR-RHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
P+V+W+K+ + + ++ +L I +V D Y+C A NS+G+
Sbjct: 36 PDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 95
Query: 95 ELS 97
EL
Sbjct: 96 ELL 98
>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 35.3 bits (80), Expect = 3e-04
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERR----IMETRGRRHTLVIRKV 71
+ E R I F P + W L ++ E L+ K
Sbjct: 10 SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKP 69
Query: 72 LFTDFGNYSCVAENSMGKTRQYLEL 96
+ GNY+ +A+N +G Q +
Sbjct: 70 THYNNGNYTLIAKNPLGTANQTING 94
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 34.6 bits (78), Expect = 3e-04
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 5/76 (6%)
Query: 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSC 81
G T I ++W + + L IR V +D G Y C
Sbjct: 17 GADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-----NGILTIRNVQPSDAGTYVC 71
Query: 82 VAENSMGKTRQYLELS 97
N + L
Sbjct: 72 TGSNMFAMDQGTATLH 87
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 35.0 bits (79), Expect = 3e-04
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 51 TTERRIMETRGRRHTLVIRKVLFTDF-GNYSCVAENSMGKTRQYLELSGK 99
+ R + + R L I + G Y C +S G + + L +
Sbjct: 52 SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 101
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 35.0 bits (79), Expect = 5e-04
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 52 TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYP 101
TE + L I+ V F+D G Y+C + + +EL + P
Sbjct: 69 TELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 118
>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 34.3 bits (77), Expect = 7e-04
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIME------TRGRRHT 65
++ + G + + F ++ W + L++ G T
Sbjct: 11 SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIST 70
Query: 66 LVIRKV-LFTDFGNYSCVAENSMGKTRQYLELS 97
L I + Y+C A NS G + + L
Sbjct: 71 LTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 103
>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1
(ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 33.7 bits (76), Expect = 8e-04
Identities = 8/64 (12%), Positives = 15/64 (23%), Gaps = 3/64 (4%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
V+ + +L T + +SC E + L +
Sbjct: 37 LTVVLLRGEKELKREPAVGEPAE---VTTTVLVRRDHHGAQFSCRTELDLRPQGLELFEN 93
Query: 98 GKYP 101
P
Sbjct: 94 TSAP 97
>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 97
Score = 33.7 bits (76), Expect = 0.001
Identities = 11/54 (20%), Positives = 16/54 (29%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
P +K ++ V D G+Y CVA N+ G
Sbjct: 36 PATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVV 89
>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor
tyro3, second domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 85
Score = 32.6 bits (73), Expect = 0.002
Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 9/71 (12%)
Query: 20 TRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNY 79
L ++W++ T K+ V+ T +
Sbjct: 14 PPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------SPSVLNVTGVTQSTMF 64
Query: 80 SCVAENSMGKT 90
SC A N G
Sbjct: 65 SCEAHNLKGLA 75
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 32.9 bits (74), Expect = 0.002
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 26 TLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85
+ FF + P++ WYK+ L + L++ V GNY+C A
Sbjct: 23 YMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASY 79
Query: 86 SMGKTR 91
+ +
Sbjct: 80 TYLGKQ 85
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 32.7 bits (73), Expect = 0.002
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRH-------TLVIRKVLFTDFGNYSCVAENSMGKT 90
+ W+K+ + + T + + LV + +D G YSC A N G
Sbjct: 33 SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP 92
Query: 91 R 91
Sbjct: 93 M 93
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 31.8 bits (71), Expect = 0.004
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 64 HTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
L K++ D G Y CVAEN G EL+
Sbjct: 53 GELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 86
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 31.4 bits (70), Expect = 0.005
Identities = 6/62 (9%), Positives = 17/62 (27%)
Query: 33 FAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
+ ++ + + +L I + +D Y + N +
Sbjct: 29 KKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKF 88
Query: 93 YL 94
+L
Sbjct: 89 FL 90
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 31.3 bits (69), Expect = 0.008
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
Query: 18 IETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFG 77
G+ + ++ + L I ++ +
Sbjct: 24 CNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYK 83
Query: 78 -NYSCVAENSMGKTRQYLELSGKYP 101
++C A+N+ G Y++L YP
Sbjct: 84 HPFTCFAKNTHGIDAAYIQL--IYP 106
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 30.6 bits (68), Expect = 0.013
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 25 HTLIFFFHFAFCRPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVA 83
H + A +V W K ++ + I E+ G + TL I + D Y CV
Sbjct: 22 HKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV 81
Query: 84 ENSMGKTR 91
T
Sbjct: 82 GGEKCSTE 89
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 30.4 bits (67), Expect = 0.014
Identities = 7/63 (11%), Positives = 13/63 (20%)
Query: 35 FCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
T + V D G Y+C+ G+ +
Sbjct: 36 KFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEV 95
Query: 95 ELS 97
+
Sbjct: 96 SIH 98
>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 30.4 bits (67), Expect = 0.015
Identities = 14/77 (18%), Positives = 18/77 (23%), Gaps = 5/77 (6%)
Query: 20 TRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLV-----IRKVLFT 74
G L + RP V W K + + VL
Sbjct: 16 LAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPN 75
Query: 75 DFGNYSCVAENSMGKTR 91
D G+Y C A
Sbjct: 76 DNGSYRCSANFQSNLIE 92
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 29.9 bits (66), Expect = 0.018
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P +IW + + ++ + + L IR + TD G Y C + ++
Sbjct: 30 PPTIIWKHKG-RDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 88
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 98
Score = 28.9 bits (64), Expect = 0.049
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
+ ++ + + G L I+ + D G Y+ ++ G
Sbjct: 36 TLVAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTVYSTNGTRIL 88
>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 28.9 bits (63), Expect = 0.051
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 3/88 (3%)
Query: 8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERR---IMETRGRRH 64
L++D + + G + + W+ + + ++ ++
Sbjct: 1 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 60
Query: 65 TLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
TL I D G Y CV G +
Sbjct: 61 TLTIYNANIDDAGIYKCVVTAEDGTQSE 88
>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), IIb [TaxId: 9606]}
Length = 88
Score = 28.7 bits (63), Expect = 0.052
Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 11/95 (11%)
Query: 8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLV 67
L L T E G L +V +++ + +
Sbjct: 3 LVLQTPHLEFQE--GETIVLRCHSWKDKPLVKVTFFQN--------GKSKKFSRSDPNFS 52
Query: 68 IRKVLFTDFGNYSCVAENSMG-KTRQYLELSGKYP 101
I + + G+Y C + + + ++ + P
Sbjct: 53 IPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP 87
>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 28.9 bits (63), Expect = 0.057
Identities = 8/60 (13%), Positives = 16/60 (26%)
Query: 31 FHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
+ + + R L+I + D G Y C++E +
Sbjct: 17 LKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNK 76
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 28.4 bits (62), Expect = 0.073
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 9/65 (13%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG-KTRQYLEL 96
+VI+YK+ ++ H + I D G Y C + + L +
Sbjct: 31 YKVIYYKD--------GEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNI 82
Query: 97 SGKYP 101
+
Sbjct: 83 TVIKA 87
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 27.9 bits (61), Expect = 0.11
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 38 PQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
++K + + + +R R L+ + L D G Y+C +N +GK +++
Sbjct: 33 GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH 90
>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 96
Score = 28.1 bits (61), Expect = 0.12
Identities = 9/63 (14%), Positives = 11/63 (17%)
Query: 29 FFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
M L I + D G Y C N +
Sbjct: 21 VTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVS 80
Query: 89 KTR 91
R
Sbjct: 81 VRR 83
>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27
[TaxId: 9606]}
Length = 89
Score = 27.5 bits (60), Expect = 0.15
Identities = 11/66 (16%), Positives = 20/66 (30%)
Query: 26 TLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85
T F + W + L + + G++H L++ G S A N
Sbjct: 18 TAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN 77
Query: 86 SMGKTR 91
+
Sbjct: 78 AKSAAN 83
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 27.6 bits (60), Expect = 0.15
Identities = 9/60 (15%), Positives = 19/60 (31%)
Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
P W +++ + ++ D GNY +N +G+ E+
Sbjct: 31 DPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 26.9 bits (58), Expect = 0.31
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
++ + + +D G Y C + + G + + L
Sbjct: 89 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 121
>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 111
Score = 27.0 bits (58), Expect = 0.32
Identities = 19/90 (21%), Positives = 25/90 (27%), Gaps = 9/90 (10%)
Query: 12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKV 71
T E+ IE GR L A+ +P + W K D R
Sbjct: 9 THEKTPIE--GRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 66
Query: 72 LFT-------DFGNYSCVAENSMGKTRQYL 94
D Y C A+N+ L
Sbjct: 67 FTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 96
>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1,
ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 25.7 bits (55), Expect = 0.59
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 64 HTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYP 101
V G Y C A ++ G+ + + ++ P
Sbjct: 47 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 84
>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 25.8 bits (55), Expect = 0.62
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 64 HTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
+L I F D G Y C + YLE
Sbjct: 48 SSLNIVNAKFEDSGEYKCQHQQVNESEPVYLE 79
>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 25.4 bits (54), Expect = 0.84
Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 3/73 (4%)
Query: 24 RHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA 83
+ A + T +++ R L +R + G CV
Sbjct: 18 GASRQLTCRLACADR---GASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVG 74
Query: 84 ENSMGKTRQYLEL 96
+ ++L
Sbjct: 75 SCGGRTFQHTVQL 87
>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor
receptor TrkA, different domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 92
Score = 25.1 bits (53), Expect = 1.1
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSC 81
G L Q W L+ T + TL + N +C
Sbjct: 17 GDDVLLRCQVEG-RGLEQAGWILTELEQSATVMKSGGLPSLGLTL-ANVTSDLNRKNVTC 74
Query: 82 VAENSMGKTRQYLELS 97
AEN +G+ ++++
Sbjct: 75 WAENDVGRAEVSVQVN 90
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 25.1 bits (54), Expect = 1.2
Identities = 8/49 (16%), Positives = 15/49 (30%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
+ + D + R L+I+ + D Y C E+
Sbjct: 41 GSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQ 89
>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 25.1 bits (53), Expect = 1.4
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 28 IFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM 87
+ F + + E R+ + + V D G Y+C+
Sbjct: 35 RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP---TGITFKSVTREDTGTYTCMVSEEG 91
Query: 88 GKTRQYLELS 97
G + +++
Sbjct: 92 GNSYGEVKVK 101
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 24.9 bits (53), Expect = 1.9
Identities = 8/82 (9%), Positives = 21/82 (25%), Gaps = 1/82 (1%)
Query: 18 IETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRH-TLVIRKVLFTDF 76
+ + + + + + + ++VI + +D
Sbjct: 18 HNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDE 77
Query: 77 GNYSCVAENSMGKTRQYLELSG 98
G Y CV + L+
Sbjct: 78 GTYECVVLKYEKDAFKREHLAE 99
>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable
domain, VL-lambda {Human (Homo sapiens), cluster 2
[TaxId: 9606]}
Length = 114
Score = 24.7 bits (53), Expect = 1.9
Identities = 12/58 (20%), Positives = 21/58 (36%)
Query: 29 FFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
+ +I+Y + L ++R G +L I + D +Y C A N
Sbjct: 37 YQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYCAAWND 94
>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), III [TaxId: 9606]}
Length = 84
Score = 24.5 bits (52), Expect = 2.0
Identities = 6/35 (17%), Positives = 8/35 (22%)
Query: 54 RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+ + I D G Y C S
Sbjct: 42 HNESLISSQASSYFIDAATVNDSGEYRCQTNLSTL 76
>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 220
Score = 24.4 bits (52), Expect = 2.9
Identities = 4/30 (13%), Positives = 7/30 (23%)
Query: 7 TLKLDTTERRIIETRGRRHTLIFFFHFAFC 36
R + G ++F F
Sbjct: 11 EANTTVGRIRFHDFLGDSWGILFSHPRDFT 40
>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii
[TaxId: 5861]}
Length = 170
Score = 24.1 bits (51), Expect = 4.6
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 19 ETRGRRHTLIFFFHFAFC 36
+ G+++ L++F+ F
Sbjct: 23 DFIGKKYVLLYFYPLDFT 40
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3,
TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 60
Score = 22.8 bits (49), Expect = 4.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 70 KVLFTDFGNYSCVAENSM 87
V FTD+GNY V +++
Sbjct: 35 VVKFTDYGNYEEVLLSNI 52
>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 1.1
[TaxId: 10090]}
Length = 113
Score = 23.5 bits (50), Expect = 5.4
Identities = 12/50 (24%), Positives = 16/50 (32%)
Query: 41 IWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
I+ +R G TL I +V D G Y C + T
Sbjct: 54 IYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPT 103
>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 119
Score = 23.3 bits (49), Expect = 5.4
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSMGK 89
++VI + ++D G ++C +N
Sbjct: 82 SIVIHNLDYSDNGTFTCDVKNPPDI 106
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 90
Score = 22.9 bits (49), Expect = 6.2
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 70 KVLFTDFGNYSCV 82
V + D+GN +
Sbjct: 56 HVFYIDYGNREVL 68
>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Escherichia coli [TaxId: 562]}
Length = 72
Score = 22.7 bits (49), Expect = 6.2
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 50 DTTERRIMETRGRRHTLVIRKVLFTDFGNY 79
R++++ GR R+ + TD GN
Sbjct: 15 SAVARQLVKLGGRP---EYRQGVVTDNGNV 41
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 22.9 bits (48), Expect = 7.7
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 65 TLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
TL + + D G Y C+ + +
Sbjct: 70 TLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMN 103
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp.
WBC-3 [TaxId: 165468]}
Length = 294
Score = 23.4 bits (49), Expect = 8.5
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 12 TTERRIIETRGRRHTLIFFFHFAF 35
++ + LI H +F
Sbjct: 247 VERKKAFADAAKGGYLIAASHLSF 270
>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa
variable domain, VL-kappa {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 119
Score = 22.8 bits (48), Expect = 8.9
Identities = 11/58 (18%), Positives = 19/58 (32%)
Query: 29 FFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
+ +I+ +L+ R G +TL I + D Y C N+
Sbjct: 36 YQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNN 93
>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 107
Score = 22.7 bits (48), Expect = 9.0
Identities = 11/62 (17%), Positives = 17/62 (27%)
Query: 29 FFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
+ +I+Y L R G ++L I + D Y C
Sbjct: 36 YQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQHHIKFP 95
Query: 89 KT 90
T
Sbjct: 96 WT 97
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366
{Methanococcus jannaschii [TaxId: 2190]}
Length = 82
Score = 22.4 bits (48), Expect = 9.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 4 YKETLKLDTTERRIIETRGR 23
YK ++ L E II+ G+
Sbjct: 49 YKRSITLTEEEEVIIQRLGK 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.139 0.434
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 394,247
Number of extensions: 15849
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 78
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)