Query psy17207
Match_columns 123
No_of_seqs 155 out of 1327
Neff 8.0
Searched_HMMs 46136
Date Sat Aug 17 00:37:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05762 Ig8_MLCK Eighth immuno 99.4 2.5E-12 5.3E-17 82.8 7.3 56 2-57 40-97 (98)
2 KOG3513|consensus 99.3 1.9E-11 4.1E-16 104.2 10.4 42 3-47 467-508 (1051)
3 cd05748 Ig_Titin_like Immunogl 99.3 4E-11 8.6E-16 72.8 7.4 50 2-51 24-73 (74)
4 cd05735 Ig8_DSCAM Eight immuno 99.2 6.9E-11 1.5E-15 74.6 7.6 51 7-57 32-88 (88)
5 cd05894 Ig_C5_MyBP-C C5 immuno 99.2 1.7E-10 3.6E-15 72.5 7.4 50 2-51 35-85 (86)
6 cd05866 Ig1_NCAM-2 First immun 99.1 1.8E-10 3.9E-15 73.5 6.8 50 2-51 40-90 (92)
7 cd05852 Ig5_Contactin-1 Fifth 99.1 1.6E-10 3.6E-15 70.5 6.2 47 2-51 26-72 (73)
8 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 2E-10 4.4E-15 71.5 6.5 36 16-51 44-79 (81)
9 cd05892 Ig_Myotilin_C C-termin 99.1 3.5E-10 7.6E-15 69.5 6.6 46 6-51 28-74 (75)
10 cd05747 Ig5_Titin_like M5, fif 99.1 3.7E-10 8.1E-15 71.4 6.9 49 2-50 43-91 (92)
11 cd05737 Ig_Myomesin_like_C C-t 99.1 4E-10 8.7E-15 71.3 6.7 50 2-51 41-91 (92)
12 cd05746 Ig4_Peroxidasin Fourth 99.1 2.3E-10 5E-15 68.7 5.3 46 2-50 23-68 (69)
13 cd05870 Ig5_NCAM-2 Fifth immun 99.1 5E-10 1.1E-14 71.6 6.8 46 6-51 52-97 (98)
14 cd05855 Ig_TrkB_d5 Fifth domai 99.1 3.9E-10 8.5E-15 70.1 5.8 50 2-51 23-77 (79)
15 cd05893 Ig_Palladin_C C-termin 99.0 8.8E-10 1.9E-14 67.7 6.6 46 6-51 28-74 (75)
16 cd05723 Ig4_Neogenin Fourth im 99.0 9.6E-10 2.1E-14 66.4 6.7 47 2-51 24-70 (71)
17 cd05865 Ig1_NCAM-1 First immun 99.0 8.9E-10 1.9E-14 70.7 6.9 46 6-51 47-94 (96)
18 cd05744 Ig_Myotilin_C_like Imm 99.0 1.3E-09 2.7E-14 66.7 7.2 46 6-51 28-74 (75)
19 cd04969 Ig5_Contactin_like Fif 99.0 6E-10 1.3E-14 67.5 5.5 46 3-51 27-72 (73)
20 cd05732 Ig5_NCAM-1_like Fifth 99.0 1E-09 2.2E-14 69.5 6.8 46 6-51 50-95 (96)
21 cd05745 Ig3_Peroxidasin Third 99.0 5.9E-10 1.3E-14 67.8 5.4 46 3-51 28-73 (74)
22 cd05895 Ig_Pro_neuregulin-1 Im 99.0 1.4E-09 3E-14 66.3 6.6 44 7-50 33-76 (76)
23 cd05743 Ig_Perlecan_D2_like Im 99.0 1.1E-09 2.3E-14 67.3 6.1 46 2-47 26-71 (78)
24 PF07679 I-set: Immunoglobulin 99.0 1.2E-09 2.6E-14 68.0 6.4 50 2-51 40-89 (90)
25 cd05869 Ig5_NCAM-1 Fifth immun 99.0 1.7E-09 3.8E-14 69.0 7.1 45 7-51 52-96 (97)
26 cd05854 Ig6_Contactin-2 Sixth 99.0 1.9E-09 4.2E-14 67.5 7.1 46 7-52 35-81 (85)
27 cd04975 Ig4_SCFR_like Fourth i 99.0 2E-09 4.4E-14 69.8 6.5 51 2-52 44-99 (101)
28 cd05853 Ig6_Contactin-4 Sixth 99.0 1.6E-09 3.5E-14 68.3 5.2 46 7-52 35-81 (85)
29 cd05725 Ig3_Robo Third immunog 98.9 4E-09 8.8E-14 63.1 6.6 43 6-51 26-68 (69)
30 cd05763 Ig_1 Subgroup of the i 98.9 5.3E-09 1.1E-13 63.5 6.9 44 6-51 30-73 (75)
31 cd05750 Ig_Pro_neuregulin Immu 98.9 3.7E-09 8E-14 63.8 6.1 39 11-49 36-74 (75)
32 cd05891 Ig_M-protein_C C-termi 98.9 4.6E-09 1E-13 66.6 6.6 49 3-51 42-91 (92)
33 cd05736 Ig2_Follistatin_like S 98.9 4.4E-09 9.5E-14 64.0 5.7 44 8-53 31-74 (76)
34 cd05863 Ig2_VEGFR-3 Second imm 98.9 3E-09 6.4E-14 64.1 4.6 37 15-51 28-64 (67)
35 cd04976 Ig2_VEGFR Second immun 98.9 3E-09 6.5E-14 64.4 4.6 35 17-51 34-68 (71)
36 cd05764 Ig_2 Subgroup of the i 98.9 6.8E-09 1.5E-13 62.7 6.0 44 5-51 30-73 (74)
37 cd05726 Ig4_Robo Fhird immunog 98.9 7.5E-09 1.6E-13 65.1 6.0 45 5-52 37-81 (90)
38 cd05876 Ig3_L1-CAM Third immun 98.9 4.2E-09 9.1E-14 63.6 4.6 37 16-52 34-70 (71)
39 cd04970 Ig6_Contactin_like Six 98.9 9.2E-09 2E-13 64.0 6.1 37 16-52 45-81 (85)
40 cd05730 Ig3_NCAM-1_like Third 98.8 1E-08 2.2E-13 64.9 6.2 44 7-52 49-92 (95)
41 cd05898 Ig5_KIRREL3 Fifth immu 98.8 1.2E-08 2.6E-13 65.9 6.6 46 6-51 48-98 (98)
42 cd05859 Ig4_PDGFR-alpha Fourth 98.8 8E-09 1.7E-13 66.9 5.6 36 17-52 64-99 (101)
43 cd05728 Ig4_Contactin-2-like F 98.8 8.8E-09 1.9E-13 64.2 5.5 46 2-51 39-84 (85)
44 cd04973 Ig1_FGFR First immunog 98.8 1.1E-08 2.4E-13 63.0 5.7 46 2-51 33-78 (79)
45 cd05851 Ig3_Contactin-1 Third 98.8 9E-09 1.9E-13 64.8 5.4 35 18-52 53-87 (88)
46 cd05773 Ig8_hNephrin_like Eigh 98.8 1.8E-08 3.9E-13 65.9 7.0 47 6-52 53-104 (109)
47 cd05758 Ig5_KIRREL3-like Fifth 98.8 1.6E-08 3.4E-13 64.6 6.5 45 6-50 48-97 (98)
48 cd05857 Ig2_FGFR Second immuno 98.8 2.3E-08 5E-13 61.8 7.0 36 16-51 49-84 (85)
49 cd04972 Ig_TrkABC_d4 Fourth do 98.8 3.1E-08 6.6E-13 62.3 7.5 41 11-51 49-89 (90)
50 cd05864 Ig2_VEGFR-2 Second imm 98.8 5.9E-09 1.3E-13 63.2 3.8 32 18-49 34-65 (70)
51 cd04977 Ig1_NCAM-1_like First 98.8 3E-08 6.5E-13 62.8 7.2 47 5-51 43-91 (92)
52 cd04974 Ig3_FGFR Third immunog 98.8 5.8E-09 1.3E-13 65.8 3.8 37 16-52 53-89 (90)
53 cd05858 Ig3_FGFR-2 Third immun 98.8 9.1E-09 2E-13 64.8 4.1 35 17-51 54-88 (90)
54 cd05734 Ig7_DSCAM Seventh immu 98.8 3.2E-08 6.9E-13 60.7 6.3 43 5-50 34-77 (79)
55 cd05867 Ig4_L1-CAM_like Fourth 98.8 2.7E-08 5.7E-13 60.7 5.9 36 17-52 40-75 (76)
56 cd04978 Ig4_L1-NrCAM_like Four 98.8 1.9E-08 4.2E-13 60.8 5.1 36 17-52 40-75 (76)
57 cd05765 Ig_3 Subgroup of the i 98.8 1.9E-08 4.2E-13 61.5 5.2 35 17-51 46-80 (81)
58 cd05731 Ig3_L1-CAM_like Third 98.7 1.4E-08 2.9E-13 60.7 4.2 36 17-52 35-70 (71)
59 cd05738 Ig2_RPTP_IIa_LAR_like 98.7 4.9E-08 1.1E-12 59.3 5.6 43 5-50 28-71 (74)
60 cd05771 IgC_Tapasin_R Tapasin- 98.7 1.2E-07 2.5E-12 64.2 8.0 69 19-87 2-73 (139)
61 cd05856 Ig2_FGFRL1-like Second 98.7 5.5E-08 1.2E-12 59.3 5.3 36 16-51 46-81 (82)
62 cd05742 Ig1_VEGFR_like First i 98.6 7.1E-08 1.5E-12 59.8 5.3 36 16-51 47-82 (84)
63 cd05868 Ig4_NrCAM Fourth immun 98.6 5.3E-08 1.2E-12 59.5 4.6 34 18-51 41-74 (76)
64 cd04968 Ig3_Contactin_like Thi 98.6 6.7E-08 1.4E-12 60.4 5.0 35 17-51 52-86 (88)
65 cd05739 Ig3_RPTP_IIa_LAR_like 98.6 1E-07 2.2E-12 57.4 5.3 31 18-50 38-68 (69)
66 cd05760 Ig2_PTK7 Second immuno 98.6 1.7E-07 3.7E-12 57.4 6.1 38 7-46 29-66 (77)
67 cd05861 Ig1_PDGFR-alphabeta Fr 98.6 1.1E-07 2.5E-12 59.2 5.2 37 16-52 44-82 (84)
68 cd05740 Ig_CEACAM_D4 Fourth im 98.6 1.9E-07 4.1E-12 59.2 6.0 43 7-51 46-89 (91)
69 cd05757 Ig2_IL1R_like Second i 98.5 2.8E-07 6.1E-12 58.7 5.8 33 17-49 51-83 (92)
70 KOG3513|consensus 98.5 5.8E-07 1.3E-11 77.3 9.2 76 2-81 371-454 (1051)
71 cd05756 Ig1_IL1R_like First im 98.5 2.4E-07 5.2E-12 59.1 4.9 35 17-51 59-93 (94)
72 PHA02785 IL-beta-binding prote 98.5 1.5E-06 3.2E-11 66.9 9.9 74 6-82 168-249 (326)
73 cd05874 Ig6_NrCAM Sixth immuno 98.5 5.2E-07 1.1E-11 55.4 5.9 43 6-50 29-76 (77)
74 cd05862 Ig1_VEGFR First immuno 98.5 2.6E-07 5.7E-12 57.9 4.6 36 16-51 48-83 (86)
75 cd05875 Ig6_hNeurofascin_like 98.5 5.9E-07 1.3E-11 55.1 6.1 42 4-47 27-72 (77)
76 cd05724 Ig2_Robo Second immuno 98.5 3.3E-07 7.1E-12 56.6 4.9 38 6-46 42-79 (86)
77 cd05733 Ig6_L1-CAM_like Sixth 98.5 3.6E-07 7.9E-12 55.9 4.6 39 6-46 29-71 (77)
78 cd05754 Ig3_Perlecan_like Thir 98.4 2.7E-07 5.9E-12 57.2 3.9 35 17-51 51-85 (85)
79 PHA02826 IL-1 receptor-like pr 98.4 1.1E-06 2.4E-11 64.6 7.5 59 17-79 97-155 (227)
80 cd07702 Ig2_VEGFR-1 Second imm 98.4 5.1E-07 1.1E-11 55.1 4.4 30 18-47 36-65 (72)
81 cd05729 Ig2_FGFR_like Second i 98.4 1.5E-06 3.2E-11 53.1 5.8 37 15-51 48-84 (85)
82 cd05850 Ig1_Contactin-2 First 98.4 2E-06 4.3E-11 54.6 6.5 41 6-50 50-92 (94)
83 KOG4221|consensus 98.3 2.4E-06 5.1E-11 74.3 8.2 86 17-105 290-379 (1381)
84 cd05849 Ig1_Contactin-1 First 98.3 1.4E-06 3.1E-11 55.3 5.2 41 6-50 49-91 (93)
85 cd05848 Ig1_Contactin-5 First 98.3 1.7E-06 3.7E-11 54.9 5.4 29 18-46 58-87 (94)
86 cd05713 Ig_MOG_like Immunoglob 98.3 2.8E-06 6E-11 54.1 6.3 46 7-52 51-99 (100)
87 smart00409 IG Immunoglobulin. 98.3 5.9E-06 1.3E-10 49.2 7.2 47 5-51 38-84 (86)
88 smart00410 IG_like Immunoglobu 98.3 5.9E-06 1.3E-10 49.2 7.2 47 5-51 38-84 (86)
89 cd05882 Ig1_Necl-1 First (N-te 98.3 3.7E-06 7.9E-11 53.8 6.5 35 5-39 48-83 (95)
90 cd05871 Ig_Semaphorin_classIII 98.3 2.9E-06 6.2E-11 53.8 5.9 44 5-52 44-88 (91)
91 cd05717 Ig1_Necl-1-3_like Firs 98.3 3.2E-06 7E-11 53.4 6.1 36 6-41 49-85 (95)
92 cd04967 Ig1_Contactin First Ig 98.3 2.8E-06 6.1E-11 53.3 5.7 37 6-46 50-87 (91)
93 cd07701 Ig1_Necl-3 First (N-te 98.3 5.2E-06 1.1E-10 52.9 6.9 37 5-41 48-85 (95)
94 cd05727 Ig2_Contactin-2-like S 98.2 1E-06 2.2E-11 56.7 3.3 39 4-44 48-86 (96)
95 KOG4194|consensus 98.2 1.3E-05 2.8E-10 66.2 9.0 74 7-82 660-735 (873)
96 cd07693 Ig1_Robo First immunog 98.2 8.7E-06 1.9E-10 51.0 6.4 42 10-51 54-98 (100)
97 cd05886 Ig1_Nectin-1_like Firs 98.2 7.8E-06 1.7E-10 52.8 6.1 46 7-52 51-98 (99)
98 cd05877 Ig_LP_like Immunoglobu 98.1 9.1E-06 2E-10 52.3 5.9 46 7-52 56-102 (106)
99 cd05897 Ig2_IL1R2_like Second 98.1 5.2E-06 1.1E-10 53.3 4.6 29 17-45 54-82 (95)
100 cd05888 Ig1_Nectin-4_like Frst 98.1 1.3E-05 2.7E-10 51.5 6.4 46 7-52 51-99 (100)
101 cd07690 Ig1_CD4 First immunogl 98.1 4.3E-06 9.4E-11 53.5 3.9 30 16-45 63-92 (94)
102 cd05881 Ig1_Necl-2 First (N-te 98.1 1.1E-05 2.4E-10 51.8 5.7 35 5-39 48-83 (95)
103 cd05774 Ig_CEACAM_D1 First imm 98.1 1.6E-05 3.6E-10 51.8 6.5 44 5-51 60-104 (105)
104 cd05873 Ig_Sema4D_like Immunog 98.1 6.6E-06 1.4E-10 52.0 4.5 36 2-41 35-71 (87)
105 cd05722 Ig1_Neogenin First imm 98.1 1.7E-05 3.6E-10 50.1 6.4 40 8-50 47-93 (95)
106 cd05718 Ig1_PVR_like First imm 98.1 2.3E-05 5E-10 49.4 6.8 46 7-52 50-97 (98)
107 cd05845 Ig2_L1-CAM_like Second 98.0 5.3E-06 1.1E-10 53.3 3.4 39 3-44 46-85 (95)
108 cd05714 Ig_CSPGs_LP Immunoglob 98.0 1.9E-05 4.1E-10 50.8 5.5 38 15-52 65-102 (106)
109 smart00408 IGc2 Immunoglobulin 98.0 1E-05 2.2E-10 45.6 3.4 27 16-42 37-63 (63)
110 cd05878 Ig_Aggrecan_like Immun 97.9 2.5E-05 5.4E-10 51.1 5.5 45 7-51 58-105 (110)
111 KOG4222|consensus 97.9 1.8E-05 3.9E-10 68.6 5.6 45 7-54 179-226 (1281)
112 cd05900 Ig_Aggrecan Immunoglob 97.9 3.5E-05 7.6E-10 50.8 5.5 45 7-51 60-107 (112)
113 cd05749 Ig2_Tyro3_like Second 97.9 1.9E-05 4.2E-10 49.0 3.8 29 16-46 47-75 (81)
114 cd05889 Ig1_DNAM-1_like First 97.8 8.4E-05 1.8E-09 47.7 6.2 45 7-51 48-94 (96)
115 cd04983 IgV_TCR_alpha_like Imm 97.8 4.6E-05 9.9E-10 49.0 5.1 38 5-42 55-94 (109)
116 cd00099 IgV Immunoglobulin var 97.8 4.2E-05 9.1E-10 48.6 4.5 37 6-42 53-91 (105)
117 cd05775 Ig_SLAM-CD84_like_N N- 97.8 7.3E-05 1.6E-09 47.7 5.6 42 7-50 52-94 (97)
118 PF13927 Ig_3: Immunoglobulin 97.8 3E-05 6.5E-10 45.6 3.2 25 15-39 51-75 (75)
119 cd04979 Ig_Semaphorin_C Immuno 97.7 5.3E-05 1.2E-09 47.2 4.2 35 18-52 51-86 (89)
120 cd05887 Ig1_Nectin-3_like Firs 97.7 0.00013 2.7E-09 46.9 6.0 45 7-51 48-94 (96)
121 cd05741 Ig_CEACAM_D1_like Firs 97.7 9.6E-05 2.1E-09 45.9 4.9 36 7-45 49-84 (92)
122 cd04984 IgV_L_lambda Immunoglo 97.7 9E-05 1.9E-09 47.0 4.8 34 6-39 51-84 (98)
123 cd05753 Ig2_FcgammaR_like Seco 97.7 4.9E-05 1.1E-09 47.2 3.3 29 17-45 47-75 (83)
124 PHA02785 IL-beta-binding prote 97.7 0.00026 5.7E-09 54.5 7.8 35 18-52 82-116 (326)
125 cd05896 Ig1_IL1RAPL-1_like Fir 97.6 0.00014 3E-09 47.4 5.1 35 17-51 69-103 (104)
126 cd05715 Ig_P0-like Immunoglobu 97.6 0.0002 4.4E-09 46.9 6.0 37 7-43 67-105 (116)
127 cd05860 Ig4_SCFR Fourth immuno 97.6 0.00017 3.6E-09 46.8 5.3 37 16-52 63-99 (101)
128 cd05752 Ig1_FcgammaR_like Frst 97.6 4.5E-05 9.8E-10 46.9 2.4 24 16-40 45-68 (78)
129 PHA02826 IL-1 receptor-like pr 97.6 0.00012 2.5E-09 53.9 5.0 38 2-41 174-211 (227)
130 cd05899 IgV_TCR_beta Immunoglo 97.6 0.00011 2.3E-09 47.6 4.3 37 6-42 59-96 (110)
131 cd04980 IgV_L_kappa Immunoglob 97.6 9.6E-05 2.1E-09 47.5 4.0 35 6-40 59-93 (106)
132 cd05879 Ig_P0 Immunoglobulin ( 97.6 0.0002 4.3E-09 47.5 5.6 37 7-43 67-105 (116)
133 cd05902 Ig_Neurocan Immunoglob 97.5 0.00028 6.1E-09 46.3 5.5 46 7-52 58-106 (110)
134 PF07686 V-set: Immunoglobulin 97.5 0.00037 8E-09 44.2 5.8 35 6-40 65-101 (114)
135 cd05901 Ig_Versican Immunoglob 97.5 0.00048 1E-08 45.8 6.4 46 7-52 65-113 (117)
136 cd05872 Ig_Sema4B_like Immunog 97.5 0.00039 8.6E-09 43.7 5.7 39 2-45 35-73 (85)
137 PF00047 ig: Immunoglobulin do 97.5 9.2E-05 2E-09 42.9 2.5 18 20-37 47-64 (64)
138 cd05880 Ig_EVA1 Immunoglobulin 97.5 0.00024 5.2E-09 46.7 4.6 37 7-43 66-104 (115)
139 PHA02633 hypothetical protein; 97.5 0.00045 9.7E-09 40.9 5.1 37 16-52 16-52 (63)
140 smart00406 IGv Immunoglobulin 97.4 0.00021 4.6E-09 42.8 3.6 31 6-36 48-80 (81)
141 cd04982 IgV_TCR_gamma Immunogl 97.4 0.00033 7.2E-09 45.6 4.4 34 6-39 63-98 (116)
142 KOG4221|consensus 97.4 0.00038 8.3E-09 61.1 5.9 80 16-95 572-660 (1381)
143 cd05846 Ig1_MRC-OX-2_like Firs 97.4 0.00054 1.2E-08 43.4 5.1 45 7-51 49-95 (97)
144 cd05720 Ig_CD8_alpha Immunoglo 97.3 0.00032 7E-09 45.2 4.0 34 6-39 57-90 (104)
145 KOG4222|consensus 97.3 0.00064 1.4E-08 59.4 6.0 75 7-83 269-345 (1281)
146 cd07700 IgV_CD8_beta Immunoglo 97.2 0.0006 1.3E-08 44.0 4.1 34 6-39 58-93 (107)
147 PF13895 Ig_2: Immunoglobulin 97.2 0.00059 1.3E-08 40.6 3.5 32 20-51 47-79 (80)
148 cd07706 IgV_TCR_delta Immunogl 97.1 0.00068 1.5E-08 44.2 3.9 35 6-40 58-94 (116)
149 KOG4194|consensus 97.1 0.0011 2.3E-08 55.3 5.4 65 16-80 572-639 (873)
150 cd05712 Ig_Siglec_N Immunoglob 97.0 0.0011 2.5E-08 43.6 4.3 34 7-40 67-102 (119)
151 cd05716 Ig_pIgR Immunoglobulin 96.9 0.0021 4.5E-08 40.5 4.7 36 6-41 50-87 (98)
152 cd05751 Ig1_LILRB1_like First 96.8 0.0015 3.2E-08 41.0 3.0 26 15-40 50-75 (91)
153 PHA03376 BARF1; Provisional 96.5 0.024 5.1E-07 41.0 8.1 39 4-42 73-111 (221)
154 cd05885 Ig2_Necl-4 Second immu 96.5 0.003 6.5E-08 39.2 3.0 28 17-44 42-69 (80)
155 cd00096 Ig Immunoglobulin doma 96.5 0.0073 1.6E-07 33.4 4.5 28 16-43 41-68 (74)
156 PHA02987 Ig domain OX-2-like p 96.4 0.01 2.3E-07 42.5 5.4 46 7-52 73-121 (189)
157 cd04981 IgV_H Immunoglobulin ( 96.4 0.0046 1E-07 40.7 3.4 33 7-39 63-97 (117)
158 PHA02982 hypothetical protein; 96.2 0.1 2.2E-06 38.3 9.8 91 6-113 88-180 (251)
159 cd05759 Ig2_KIRREL3-like Secon 96.1 0.015 3.2E-07 35.4 4.5 24 18-41 46-69 (82)
160 PF07354 Sp38: Zona-pellucida- 95.0 0.031 6.8E-07 42.0 3.7 36 3-41 25-60 (271)
161 PF00041 fn3: Fibronectin type 94.7 0.23 5E-06 29.4 6.5 52 67-122 12-65 (85)
162 cd00098 IgC Immunoglobulin Con 93.7 0.11 2.4E-06 32.0 3.6 25 18-42 62-86 (95)
163 cd05711 Ig_FcalphaRI Immunoglo 93.6 0.11 2.4E-06 32.7 3.5 22 17-38 54-75 (94)
164 PF08204 V-set_CD47: CD47 immu 92.8 0.1 2.3E-06 35.3 2.5 34 18-52 86-119 (130)
165 PF11465 Receptor_2B4: Natural 92.3 0.35 7.7E-06 31.7 4.4 38 7-46 62-99 (108)
166 KOG3515|consensus 91.7 0.53 1.1E-05 40.3 5.9 76 18-93 458-535 (741)
167 cd07694 Ig2_CD4 Second immunog 90.1 1.1 2.4E-05 28.3 5.0 35 16-50 49-83 (88)
168 cd05761 Ig2_Necl-1-4_like Seco 90.0 1.1 2.4E-05 27.2 4.9 26 18-43 45-70 (82)
169 KOG1480|consensus 89.8 0.13 2.8E-06 44.0 0.7 31 16-46 181-211 (909)
170 cd05883 Ig2_Necl-2 Second immu 87.5 0.82 1.8E-05 28.4 3.1 25 17-41 43-67 (82)
171 PHA03042 CD47-like protein; Pr 86.7 2.1 4.6E-05 32.5 5.4 35 17-52 70-104 (286)
172 cd05721 IgV_CTLA-4 Immunoglobu 85.9 1.8 3.8E-05 28.7 4.1 32 7-38 61-94 (115)
173 cd05755 Ig2_ICAM-1_like Second 85.7 1.2 2.6E-05 28.7 3.3 27 17-43 61-87 (100)
174 cd00063 FN3 Fibronectin type 3 83.1 6 0.00013 22.5 5.4 37 68-106 14-52 (93)
175 PF01108 Tissue_fac: Tissue fa 81.6 3.8 8.2E-05 26.1 4.4 34 69-104 35-69 (107)
176 KOG3515|consensus 81.2 2.6 5.7E-05 36.3 4.3 84 7-93 51-138 (741)
177 cd07692 Ig_CD3_epsilon Immunog 81.1 1.9 4.1E-05 25.7 2.6 24 16-40 33-56 (65)
178 smart00060 FN3 Fibronectin typ 81.0 6.4 0.00014 21.6 4.9 52 68-122 14-66 (83)
179 cd07691 Ig_CD3_gamma_delta Imm 80.5 2.6 5.7E-05 25.4 3.0 33 17-51 32-64 (69)
180 cd07705 Ig2_Necl-1 Second immu 80.4 2.9 6.3E-05 25.5 3.4 24 18-41 46-69 (83)
181 PF05790 C2-set: Immunoglobuli 79.1 12 0.00027 22.9 6.9 33 19-51 44-77 (80)
182 PHA03282 envelope glycoprotein 78.7 5.6 0.00012 32.6 5.2 28 6-37 116-143 (540)
183 smart00407 IGc1 Immunoglobulin 78.5 8.4 0.00018 22.7 5.0 23 18-40 48-70 (75)
184 cd05884 Ig2_Necl-3 Second immu 78.3 6 0.00013 24.2 4.3 23 18-40 46-68 (83)
185 KOG4597|consensus 77.5 2.5 5.5E-05 34.6 3.0 36 16-51 255-290 (560)
186 cd05771 IgC_Tapasin_R Tapasin- 75.5 9.2 0.0002 25.3 5.0 23 18-40 108-130 (139)
187 cd07703 Ig2_Nectin-2_like Seco 75.4 8.2 0.00018 24.4 4.5 24 18-41 59-82 (95)
188 cd05898 Ig5_KIRREL3 Fifth immu 75.1 6.7 0.00015 25.0 4.0 27 67-93 15-41 (98)
189 PHA02914 Immunoglobulin-like d 70.1 5 0.00011 32.3 3.0 36 5-40 327-368 (500)
190 cd05719 Ig2_PVR_like Second im 70.1 16 0.00036 22.9 4.9 25 17-41 58-82 (95)
191 cd05860 Ig4_SCFR Fourth immuno 64.5 8.8 0.00019 24.8 2.8 27 67-93 17-43 (101)
192 KOG0196|consensus 62.4 43 0.00093 29.7 7.2 31 65-95 453-485 (996)
193 PHA02914 Immunoglobulin-like d 61.9 25 0.00054 28.5 5.4 39 17-55 80-119 (500)
194 PHA03283 envelope glycoprotein 61.0 99 0.0021 25.9 10.0 37 15-51 131-167 (542)
195 cd07698 IgC_MHC_I_alpha3 Class 59.5 22 0.00049 21.8 4.0 15 26-40 68-82 (93)
196 PHA03286 envelope glycoprotein 59.5 1E+02 0.0022 25.5 9.8 36 15-50 124-159 (492)
197 PHA03269 envelope glycoprotein 57.3 87 0.0019 26.1 7.8 84 7-92 276-367 (566)
198 KOG4228|consensus 50.4 28 0.00061 31.4 4.3 64 32-96 1-65 (1087)
199 PF07654 C1-set: Immunoglobuli 49.0 36 0.00078 20.2 3.7 20 18-40 57-76 (83)
200 PF08205 C2-set_2: CD80-like C 48.8 56 0.0012 19.4 5.3 26 18-43 61-86 (89)
201 cd07699 IgC_L Immunoglobulin C 48.3 36 0.00077 21.4 3.7 21 19-39 67-87 (100)
202 cd05847 IgC_CH2_IgE CH2 domain 47.7 63 0.0014 20.1 4.7 24 18-41 63-86 (94)
203 cd07689 Ig2_VCAM-1 Second immu 46.7 59 0.0013 20.9 4.4 24 66-89 13-36 (99)
204 PHA03282 envelope glycoprotein 43.8 25 0.00054 29.0 2.9 31 15-46 330-360 (540)
205 PHA03286 envelope glycoprotein 43.3 31 0.00066 28.3 3.3 30 8-38 298-327 (492)
206 COG5475 Uncharacterized small 42.8 63 0.0014 18.7 3.6 27 19-47 19-45 (60)
207 cd05770 IgC_beta2m Class I maj 42.4 82 0.0018 19.6 4.6 12 27-38 69-80 (93)
208 PHA03283 envelope glycoprotein 42.2 33 0.00072 28.5 3.4 28 11-38 308-335 (542)
209 cd05767 IgC_MHC_II_alpha Class 39.3 89 0.0019 19.5 4.4 10 29-38 72-81 (94)
210 PHA03273 envelope glycoprotein 36.9 2.4E+02 0.0053 23.3 8.0 26 18-43 198-223 (486)
211 PF02480 Herpes_gE: Alphaherpe 36.6 27 0.00059 28.3 2.1 31 15-46 266-296 (439)
212 PHA03189 UL14 tegument protein 36.3 57 0.0012 25.5 3.6 34 8-41 122-156 (348)
213 PF02480 Herpes_gE: Alphaherpe 30.8 16 0.00036 29.6 0.0 30 17-46 88-117 (439)
214 KOG4258|consensus 30.4 2.3E+02 0.005 25.5 6.6 43 52-95 609-653 (1025)
215 KOG3611|consensus 29.1 34 0.00073 29.7 1.6 24 17-40 611-634 (737)
216 PHA03271 envelope glycoprotein 28.4 3.4E+02 0.0073 22.4 9.7 38 5-42 192-231 (490)
217 cd07697 IgC_TCR_gamma T cell r 27.6 1.4E+02 0.003 18.7 3.9 19 19-39 65-83 (96)
218 PF05083 LST1: LST-1 protein; 27.2 48 0.001 20.1 1.5 15 26-40 58-72 (74)
219 cd05768 IgC_CH4 CH4 domain (fo 26.5 1E+02 0.0022 19.4 3.1 20 19-38 69-88 (102)
220 cd04985 IgC_CH1 CH1 domain (fi 26.1 1.2E+02 0.0027 18.8 3.5 21 19-39 65-85 (95)
221 PHA03240 envelope glycoprotein 25.7 29 0.00063 25.7 0.5 36 7-44 96-131 (258)
222 PHA03270 envelope glycoprotein 25.5 3.8E+02 0.0083 22.1 9.1 26 17-42 181-206 (466)
223 PHA03281 envelope glycoprotein 25.3 74 0.0016 26.9 2.8 24 15-38 472-495 (642)
224 KOG0200|consensus 25.3 53 0.0012 27.5 2.1 24 16-39 11-34 (609)
225 cd07696 IgC_CH3 CH3 domain (th 25.2 1.4E+02 0.003 18.6 3.6 8 31-38 76-83 (96)
226 KOG4367|consensus 24.7 1.5E+02 0.0032 24.6 4.3 41 53-93 437-479 (699)
227 PF10430 Ig_Tie2_1: Tie-2 Ig-l 21.7 1.8E+02 0.0038 18.6 3.4 20 28-47 73-93 (96)
228 PHA03281 envelope glycoprotein 20.3 5E+02 0.011 22.2 6.6 35 17-51 297-332 (642)
No 1
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.37 E-value=2.5e-12 Score=82.84 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=48.6
Q ss_pred ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCCc
Q psy17207 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPA 57 (123)
Q Consensus 2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p~ 57 (123)
+|..++|+.+......+.|+|.++..+|+|.|+|.|+|.+|.+.+++.|. ++|.||
T Consensus 40 ~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 40 QIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCCC
Confidence 56778899888777789999999999999999999999999999876665 577765
No 2
>KOG3513|consensus
Probab=99.30 E-value=1.9e-11 Score=104.17 Aligned_cols=42 Identities=38% Similarity=0.536 Sum_probs=35.4
Q ss_pred cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE
Q psy17207 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY 47 (123)
Q Consensus 3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~ 47 (123)
+..++||.+..+| +|.|.+++++|+|.|+|+|+|.+|+++++
T Consensus 467 ~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~ 508 (1051)
T KOG3513|consen 467 LLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAEST 508 (1051)
T ss_pred cccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceE
Confidence 4567888887544 89999999999999999999999999874
No 3
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.25 E-value=4e-11 Score=72.78 Aligned_cols=50 Identities=30% Similarity=0.470 Sum_probs=44.3
Q ss_pred ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+|..++|+.+...+..+.|.|.++...|+|.|+|.|+|.+|.+..++.|.
T Consensus 24 ~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 24 PLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred EcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 35567888887777788999999999999999999999999999998875
No 4
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.22 E-value=6.9e-11 Score=74.55 Aligned_cols=51 Identities=33% Similarity=0.526 Sum_probs=40.5
Q ss_pred CCEEEEE--c--CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCc
Q psy17207 7 ERRIMET--R--GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPA 57 (123)
Q Consensus 7 ~R~~i~~--~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~ 57 (123)
.||.+.. . ...+.|.|.++..+|+|.|+|+|.|.+|.+..++.|.. +|.||
T Consensus 32 ~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~~P 88 (88)
T cd05735 32 SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPP 88 (88)
T ss_pred CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCCCC
Confidence 5887653 1 22368999999999999999999999999999877664 56554
No 5
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.17 E-value=1.7e-10 Score=72.54 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=43.1
Q ss_pred cccc-CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 2 RLET-TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 2 ~l~~-d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+|.. ++|+.+...+..+.|.|.++...|+|.|+|.|+|.+|.+.+++.|.
T Consensus 35 ~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~ 85 (86)
T cd05894 35 AFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVK 85 (86)
T ss_pred ECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEE
Confidence 3443 4688887767788999999999999999999999999999998875
No 6
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.14 E-value=1.8e-10 Score=73.50 Aligned_cols=50 Identities=28% Similarity=0.516 Sum_probs=42.3
Q ss_pred ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee-EEEEEEe
Q psy17207 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-RAYLELS 51 (123)
Q Consensus 2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-~~~i~l~ 51 (123)
++.+++|+.+...+..+.|+|.++..+|+|.|+|.|+|..|.. ..++.|.
T Consensus 40 ~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~ 90 (92)
T cd05866 40 KIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 90 (92)
T ss_pred EecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence 3566789988877778899999999999999999999999997 4566553
No 7
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.14 E-value=1.6e-10 Score=70.52 Aligned_cols=47 Identities=30% Similarity=0.299 Sum_probs=40.2
Q ss_pred ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+|..+.|+.+... ++|.|.+++.+|+|.|+|.|+|.+|++.++..|.
T Consensus 26 ~l~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 26 LLVNNSRISIWDD---GSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred ecccCCCEEEcCC---CEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 3456788888643 4799999999999999999999999999988775
No 8
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.13 E-value=2e-10 Score=71.55 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=33.2
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
..+.|.|.+++..|+|.|+|+|+|.+|.+.+++.|.
T Consensus 44 ~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 44 YHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred cEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 356899999999999999999999999999998875
No 9
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.11 E-value=3.5e-10 Score=69.51 Aligned_cols=46 Identities=30% Similarity=0.382 Sum_probs=38.7
Q ss_pred CCCEEEEEcC-CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 6 TERRIMETRG-SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 6 d~R~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
++|+++...+ ...+|.|.+++.+|+|.|+|.|.|.+|++..+..|.
T Consensus 28 ~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 28 TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 4788876443 235899999999999999999999999999987764
No 10
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.10 E-value=3.7e-10 Score=71.40 Aligned_cols=49 Identities=31% Similarity=0.422 Sum_probs=43.3
Q ss_pred ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50 (123)
Q Consensus 2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l 50 (123)
+|..++|+.+...+..+.|.|.+++.+|+|.|+|.|+|.+|.+..++.|
T Consensus 43 ~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 43 IIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred ECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 3556789988776677899999999999999999999999999998876
No 11
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.09 E-value=4e-10 Score=71.32 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=42.1
Q ss_pred ccccCCCEEEEEc-CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 2 RLETTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 2 ~l~~d~R~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+|..++|+.+... +....|.|.+++.+|+|.|+|.|+|.+|.+...+.|.
T Consensus 41 ~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05737 41 ALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS 91 (92)
T ss_pred ECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence 4566778877643 4467899999999999999999999999999988775
No 12
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.09 E-value=2.3e-10 Score=68.73 Aligned_cols=46 Identities=26% Similarity=0.411 Sum_probs=38.9
Q ss_pred ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50 (123)
Q Consensus 2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l 50 (123)
+|..+.|+.+.. .+.|.|.++...|+|.|+|.|.|.+|.+..++.|
T Consensus 23 ~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 23 QVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred ECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 345567777753 3589999999999999999999999999998876
No 13
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.08 E-value=5e-10 Score=71.64 Aligned_cols=46 Identities=30% Similarity=0.496 Sum_probs=40.0
Q ss_pred CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+.|+.+......+.|.|.+++.+|+|.|+|.|.|.+|.+..++.|.
T Consensus 52 ~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 97 (98)
T cd05870 52 DGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 97 (98)
T ss_pred CceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEe
Confidence 4688876555567899999999999999999999999999988774
No 14
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.07 E-value=3.9e-10 Score=70.14 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=38.7
Q ss_pred ccccCCCEEE--E---EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 2 RLETTERRIM--E---TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 2 ~l~~d~R~~i--~---~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+|..++|+.. . .....+.|.|.++...|+|.|+|+|+|.+|++.+++.+.
T Consensus 23 ~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 23 ILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred ECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 4555655432 1 112356899999999999999999999999999998764
No 15
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.05 E-value=8.8e-10 Score=67.65 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=38.4
Q ss_pred CCCEEEEEcCC-EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 6 TERRIMETRGS-RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 6 d~R~~i~~~~~-~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
++|+.+...+. ...|.|.++..+|+|.|+|.|.|.+|++..+..|.
T Consensus 28 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 28 TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 46788765432 34799999999999999999999999999987764
No 16
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.05 E-value=9.6e-10 Score=66.42 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=39.0
Q ss_pred ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
++..+.|+.+... +.|.|.+++.+|+|.|+|+|+|.+|+..++++|.
T Consensus 24 ~~~~~~~~~~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 24 MVIPSDYFKIVKE---HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred ECCCCCCEEEEec---CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 3455677777543 3688999999999999999999999999998875
No 17
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.05 E-value=8.9e-10 Score=70.74 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=37.8
Q ss_pred CCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCC-ceeEEEEEEe
Q psy17207 6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPM-GKHRAYLELS 51 (123)
Q Consensus 6 d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~i~l~ 51 (123)
+.|+.+.. .+..++|.|.+++.+|+|.|+|+|+|.+ |+.++++.|.
T Consensus 47 ~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~ 94 (96)
T cd05865 47 QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVK 94 (96)
T ss_pred CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEE
Confidence 34666543 3446799999999999999999999997 9999988875
No 18
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.04 E-value=1.3e-09 Score=66.72 Aligned_cols=46 Identities=26% Similarity=0.324 Sum_probs=38.5
Q ss_pred CCCEEEEEcC-CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 6 TERRIMETRG-SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 6 d~R~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
++|+.+...+ ....|.|.+++.+|+|.|+|.|.|.+|.+..++.|.
T Consensus 28 ~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 28 TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 4688775443 345799999999999999999999999999988774
No 19
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.03 E-value=6e-10 Score=67.50 Aligned_cols=46 Identities=35% Similarity=0.398 Sum_probs=39.3
Q ss_pred cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
|..++|+.+... +.|.|.+++..|+|.|+|+|.|.+|....++.|.
T Consensus 27 ~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 27 LTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred cccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 456678877543 4799999999999999999999999999988775
No 20
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.03 E-value=1e-09 Score=69.46 Aligned_cols=46 Identities=26% Similarity=0.500 Sum_probs=39.5
Q ss_pred CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+.|+.+......+.|+|.+++.+|+|.|+|.|+|.+|.+..++.|.
T Consensus 50 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 95 (96)
T cd05732 50 DGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLE 95 (96)
T ss_pred cceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEe
Confidence 3567666555678999999999999999999999999999988774
No 21
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.03 E-value=5.9e-10 Score=67.76 Aligned_cols=46 Identities=33% Similarity=0.571 Sum_probs=38.5
Q ss_pred cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+..+.|+.+.. .+.|.|.+++.+|+|.|+|.|.|.+|....++.|.
T Consensus 28 ~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 28 LSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 45566766643 35899999999999999999999999999988775
No 22
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.02 E-value=1.4e-09 Score=66.33 Aligned_cols=44 Identities=18% Similarity=0.386 Sum_probs=36.9
Q ss_pred CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50 (123)
Q Consensus 7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l 50 (123)
.|+.+...+..+.|.|.+++..|+|.|+|+|.|.+|....++.+
T Consensus 33 ~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~~ 76 (76)
T cd05895 33 NKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTANV 76 (76)
T ss_pred ceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEeC
Confidence 44555555567899999999999999999999999999987653
No 23
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.01 E-value=1.1e-09 Score=67.30 Aligned_cols=46 Identities=35% Similarity=0.494 Sum_probs=39.8
Q ss_pred ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE
Q psy17207 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY 47 (123)
Q Consensus 2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~ 47 (123)
++..+.|+.+...+..+.|.|.++..+|+|.|+|.|.|.+|...+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 26 HVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred ECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 3556678888777777899999999999999999999999998764
No 24
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.01 E-value=1.2e-09 Score=68.04 Aligned_cols=50 Identities=32% Similarity=0.591 Sum_probs=45.6
Q ss_pred ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+|..++|+.+...+..+.|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 40 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~ 89 (90)
T PF07679_consen 40 PLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLT 89 (90)
T ss_dssp EEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred ceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence 46678899998888899999999999999999999999999999998775
No 25
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.01 E-value=1.7e-09 Score=69.00 Aligned_cols=45 Identities=20% Similarity=0.443 Sum_probs=38.8
Q ss_pred CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
.|+.+......+.|.|.+++.+|+|.|+|.|.|.+|.+..++.|.
T Consensus 52 ~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 96 (97)
T cd05869 52 GHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE 96 (97)
T ss_pred ccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence 466665555567999999999999999999999999999988775
No 26
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.01 E-value=1.9e-09 Score=67.52 Aligned_cols=46 Identities=22% Similarity=0.232 Sum_probs=37.0
Q ss_pred CCEEE-EEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 7 ERRIM-ETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 7 ~R~~i-~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
.|+.+ ......+.|+|.+++..|+|.|+|+|.|.+|...+++.|..
T Consensus 35 ~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V 81 (85)
T cd05854 35 GHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVV 81 (85)
T ss_pred CcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEE
Confidence 45533 22234579999999999999999999999999999877754
No 27
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.98 E-value=2e-09 Score=69.76 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=39.5
Q ss_pred ccccCCCEEEEEc-----CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 2 RLETTERRIMETR-----GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 2 ~l~~d~R~~i~~~-----~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
+|..+.++.+... ...+.|.|..+..+|+|.|+|+|+|.+|.+..++.|..
T Consensus 44 ~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V 99 (101)
T cd04975 44 TLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYV 99 (101)
T ss_pred eCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEE
Confidence 4555555544322 13578999999999999999999999999999887763
No 28
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.95 E-value=1.6e-09 Score=68.26 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=36.9
Q ss_pred CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
.||.+.. ....+.|+|++++..|+|+|+|+|+|.++...++..|..
T Consensus 35 ~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V 81 (85)
T cd05853 35 DHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIV 81 (85)
T ss_pred ccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEE
Confidence 4665532 124568999999999999999999999999998766654
No 29
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.94 E-value=4e-09 Score=63.07 Aligned_cols=43 Identities=40% Similarity=0.555 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+.|+.+.. .+.|.|.+++.+|+|.|+|.|.|.+|.+..++.|.
T Consensus 26 ~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 26 KGRAEILD---DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred CCcEEEee---CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 45666653 34899999999999999999999999999987764
No 30
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.93 E-value=5.3e-09 Score=63.54 Aligned_cols=44 Identities=30% Similarity=0.394 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+.|+.+... .+.|.|.+++.+|+|.|+|.|.|.+|....++.|.
T Consensus 30 ~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 30 ERRMHVMPE--DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred ccceEEecC--CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 456665432 35899999999999999999999999999887765
No 31
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.93 E-value=3.7e-09 Score=63.80 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=33.3
Q ss_pred EEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEE
Q psy17207 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE 49 (123)
Q Consensus 11 i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~ 49 (123)
+......+.|.|.++..+|+|.|+|+|.|.+|.+..++.
T Consensus 36 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 36 IRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred EEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 333445679999999999999999999999999988764
No 32
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.92 E-value=4.6e-09 Score=66.61 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=40.4
Q ss_pred cccCCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 3 LETTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 3 l~~d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+..++|+.+.. .+..+.|.|.+++.+|+|.|+|.|.|.+|.+.+++.|.
T Consensus 42 ~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05891 42 IELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVS 91 (92)
T ss_pred CCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence 45567776643 23346899999999999999999999999999998875
No 33
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.90 E-value=4.4e-09 Score=63.99 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=36.6
Q ss_pred CEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc
Q psy17207 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK 53 (123)
Q Consensus 8 R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~ 53 (123)
|+.+. +....|.|.++...|.|.|+|.|.|.+|.++.++.|.+.
T Consensus 31 ~~~~~--~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 31 QLTLI--ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred cEEEe--CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 44443 334579999999999999999999999999999888653
No 34
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.89 E-value=3e-09 Score=64.12 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=31.8
Q ss_pred CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
...+.|.|.++..+|+|.|+|+|+|.+|..+.++.|.
T Consensus 28 ~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~ 64 (67)
T cd05863 28 HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLE 64 (67)
T ss_pred CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEE
Confidence 3456899999999999999999999999887766553
No 35
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.89 E-value=3e-09 Score=64.38 Aligned_cols=35 Identities=34% Similarity=0.494 Sum_probs=30.7
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
.+.|.|.+++.+|+|.|+|.|.|.+|....++.+.
T Consensus 34 ~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~ 68 (71)
T cd04976 34 GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT 68 (71)
T ss_pred CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence 46899999999999999999999999887765543
No 36
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.88 E-value=6.8e-09 Score=62.75 Aligned_cols=44 Identities=30% Similarity=0.455 Sum_probs=35.6
Q ss_pred cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
.+.|+.+.. .+.|.|.++...|+|.|+|+|.|.+|.+..++.|.
T Consensus 30 ~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 30 NSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 334444433 35799999999999999999999999999988774
No 37
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.86 E-value=7.5e-09 Score=65.11 Aligned_cols=45 Identities=27% Similarity=0.314 Sum_probs=37.2
Q ss_pred cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
...|+.+.. .+.|+|.+++.+|+|.|+|.|.|.+|...+.+.|..
T Consensus 37 ~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 81 (90)
T cd05726 37 SSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEV 81 (90)
T ss_pred CCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 356777753 247999999999999999999999999988776654
No 38
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.86 E-value=4.2e-09 Score=63.58 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=33.3
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
..+.|.|.+++.+|+|.|+|.|+|.+|.+..++.|..
T Consensus 34 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 34 NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 3568999999999999999999999999999887753
No 39
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.86 E-value=9.2e-09 Score=63.97 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=32.8
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
..+.|.|.+++..|+|.|+|+|.|.+|...++..|..
T Consensus 45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 81 (85)
T cd04970 45 SNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIV 81 (85)
T ss_pred ccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEE
Confidence 4578999999999999999999999999998766654
No 40
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.85 E-value=1e-08 Score=64.94 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=36.6
Q ss_pred CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
.|+.+.. ..+.|+|.+++..|+|.|+|.|.|.+|.+..++.|..
T Consensus 49 ~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 92 (95)
T cd05730 49 EKYSFNE--DGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKV 92 (95)
T ss_pred CEEEEeC--CCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 5565542 3457999999999999999999999999999887764
No 41
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.85 E-value=1.2e-08 Score=65.90 Aligned_cols=46 Identities=33% Similarity=0.542 Sum_probs=40.1
Q ss_pred CCCEEEEEc----CCEEEEEEcccCCCC-CeeEEEEEEcCCceeEEEEEEe
Q psy17207 6 TERRIMETR----GSRHTLMIRKVVASD-FGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 6 d~R~~i~~~----~~~~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+.||.|... +..+.|+|.++...| .|.|.|.|.|.+|.+...|.|.
T Consensus 48 ~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L~ 98 (98)
T cd05898 48 SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQLE 98 (98)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEeC
Confidence 589998653 688999999998878 5899999999999999998873
No 42
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.84 E-value=8e-09 Score=66.86 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=32.6
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
.+.|.|.++..+|+|.|+|+|+|..|.+..++.|..
T Consensus 64 ~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V 99 (101)
T cd05859 64 VSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQI 99 (101)
T ss_pred ccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEE
Confidence 468999999999999999999999999998877653
No 43
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.83 E-value=8.8e-09 Score=64.24 Aligned_cols=46 Identities=37% Similarity=0.422 Sum_probs=38.3
Q ss_pred ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
++..+.|+.+. .+.|.|.++..+|+|.|+|.|.|.+|...+++.|.
T Consensus 39 ~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05728 39 PLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTIYASAELA 84 (85)
T ss_pred ECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEE
Confidence 34555676653 34899999999999999999999999999988875
No 44
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.83 E-value=1.1e-08 Score=63.00 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=38.7
Q ss_pred ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+|..+.|+.+. ...|.|.+++.+|+|.|+|.|.|.+|.+...+.|.
T Consensus 33 ~l~~~~~~~~~----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 33 QLGENNRTRIT----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred CCCCCceEEEe----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 56667788764 24799999999999999999999999988887664
No 45
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.83 E-value=9e-09 Score=64.76 Aligned_cols=35 Identities=31% Similarity=0.428 Sum_probs=32.0
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
+.|.|.+++.+|.|.|+|.|.|.+|.+..++.|..
T Consensus 53 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 53 AVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred CEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 58999999999999999999999999999877753
No 46
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.82 E-value=1.8e-08 Score=65.90 Aligned_cols=47 Identities=26% Similarity=0.361 Sum_probs=37.7
Q ss_pred CCCEEEEE--c--CCEEEEEEcccC-CCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 6 TERRIMET--R--GSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 6 d~R~~i~~--~--~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
+.||.+.. . ...+.|+|.++. .+|+|.|+|.|.|.+|.+..++.|..
T Consensus 53 ~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~ 104 (109)
T cd05773 53 NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVS 104 (109)
T ss_pred CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEe
Confidence 45776532 1 124689999997 59999999999999999999988875
No 47
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.82 E-value=1.6e-08 Score=64.64 Aligned_cols=45 Identities=36% Similarity=0.485 Sum_probs=37.4
Q ss_pred CCCEEEEEc----CCEEEEEEcccCCCC-CeeEEEEEEcCCceeEEEEEE
Q psy17207 6 TERRIMETR----GSRHTLMIRKVVASD-FGNYSCEATNPMGKHRAYLEL 50 (123)
Q Consensus 6 d~R~~i~~~----~~~~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~~i~l 50 (123)
+.||.+... +..+.|.|.++..+| .|.|+|+|.|.+|.+.+.+.|
T Consensus 48 ~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 48 SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred CCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 368887643 345689999999955 899999999999999998876
No 48
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.82 E-value=2.3e-08 Score=61.81 Aligned_cols=36 Identities=33% Similarity=0.566 Sum_probs=32.9
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
....|.|.++...|+|.|+|+|.|.+|....++.|.
T Consensus 49 ~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 49 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 356899999999999999999999999999988775
No 49
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.81 E-value=3.1e-08 Score=62.29 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=35.0
Q ss_pred EEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 11 i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
.......+.|.|.++...|.|.|+|.|.|.+|.+.+++.|.
T Consensus 49 ~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 49 LETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred EEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 33334567899999999999999999999999999988774
No 50
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.80 E-value=5.9e-09 Score=63.24 Aligned_cols=32 Identities=34% Similarity=0.442 Sum_probs=28.5
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCCceeEEEEE
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLE 49 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~ 49 (123)
+.|.|.++..+|+|.|+|+|.|.+|..+.+..
T Consensus 34 ~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t 65 (70)
T cd05864 34 VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHT 65 (70)
T ss_pred CEEEECcCCHHHCEEEEEEEEECCCceeeEEE
Confidence 57999999999999999999999998776543
No 51
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.80 E-value=3e-08 Score=62.85 Aligned_cols=47 Identities=30% Similarity=0.396 Sum_probs=35.7
Q ss_pred cCCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCc-eeEEEEEEe
Q psy17207 5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMG-KHRAYLELS 51 (123)
Q Consensus 5 ~d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G-~~~~~i~l~ 51 (123)
..+|+.+.. .+..++|+|.+++.+|+|.|+|.|.|.+| ..++++.|.
T Consensus 43 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 43 TQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred cCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 345665443 34567999999999999999999999975 456677664
No 52
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.80 E-value=5.8e-09 Score=65.79 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=32.7
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
....|.|.+++.+|+|.|+|+|.|.+|...++..|.+
T Consensus 53 ~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 53 ESEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred ccceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 3468999999999999999999999999998877653
No 53
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.77 E-value=9.1e-09 Score=64.78 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=31.9
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
.+.|.|++++.+|+|.|+|+|.|.+|.+..+..|.
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 88 (90)
T cd05858 54 MEVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLT 88 (90)
T ss_pred eeEEEEccCCHHHCEEEEEEEEeCCCcccceEEEE
Confidence 46899999999999999999999999998887665
No 54
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.77 E-value=3.2e-08 Score=60.71 Aligned_cols=43 Identities=26% Similarity=0.483 Sum_probs=34.2
Q ss_pred cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEE
Q psy17207 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLEL 50 (123)
Q Consensus 5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l 50 (123)
.++|+.+.. .++|.|.+++.+|+|.|+|+|.|.+|.+.. .+.|
T Consensus 34 ~~~r~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 34 LAGRIQLLS---NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred cCCCEEEec---CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 456776643 358999999999999999999999998843 4444
No 55
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.76 E-value=2.7e-08 Score=60.68 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=32.4
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
.+.|.|.+++.+|+|.|+|.|.|.+|...+.+.|.+
T Consensus 40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 40 SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 358999999999999999999999999998877753
No 56
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.76 E-value=1.9e-08 Score=60.84 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=32.7
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
.+.|.|.+++..|+|.|+|.|.|.+|...+.+.|..
T Consensus 40 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 40 GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 468999999999999999999999999999887753
No 57
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.76 E-value=1.9e-08 Score=61.46 Aligned_cols=35 Identities=37% Similarity=0.472 Sum_probs=32.5
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
.+.|.|.+++.+|+|.|+|.|.|.+|.....+.|.
T Consensus 46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 46 IGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred ccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 36899999999999999999999999999988875
No 58
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.75 E-value=1.4e-08 Score=60.66 Aligned_cols=36 Identities=33% Similarity=0.571 Sum_probs=32.6
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
.+.|.|.+++..|+|.|+|.|.|.+|....++.|..
T Consensus 35 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 35 NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 468999999999999999999999999998887753
No 59
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.70 E-value=4.9e-08 Score=59.29 Aligned_cols=43 Identities=33% Similarity=0.373 Sum_probs=33.8
Q ss_pred cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE-EEEEE
Q psy17207 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLEL 50 (123)
Q Consensus 5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~~i~l 50 (123)
.+.|+.+.. .+.|.|.+++.+|+|.|+|.|.|.+|... ....|
T Consensus 28 ~~~~~~~~~---~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l 71 (74)
T cd05738 28 SNGRIKQLR---SGALQIENSEESDQGKYECVATNSAGTRYSAPANL 71 (74)
T ss_pred CCCCEEEcC---CcEEEECCCChhhCEEEEEEEECCCCceEcccEEE
Confidence 456777643 34799999999999999999999999864 34444
No 60
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.70 E-value=1.2e-07 Score=64.23 Aligned_cols=69 Identities=17% Similarity=0.347 Sum_probs=48.3
Q ss_pred EEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCceeecCCCCCCCCeEEEEEEeCCCCCC-cceE
Q psy17207 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSHPQGRLPNSYNITWMVSSYTPL-EEFK 87 (123)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi-~~y~ 87 (123)
+|+|.+++.+|+|.|+|.+.|..|.....+.|.. +|....+........+..+.|.|.+.+..|. ..+.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~ 73 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVE 73 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEE
Confidence 6999999999999999999999999888777764 3332222211111135678999999876553 3444
No 61
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.67 E-value=5.5e-08 Score=59.30 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=32.8
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
....|.|.+++.+|+|.|+|.|.|..|.+..++.|.
T Consensus 46 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 46 KKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred ceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 357899999999999999999999999999988774
No 62
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.64 E-value=7.1e-08 Score=59.78 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=32.2
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
..+.|+|.+++.+|+|.|+|.|.|.+|....+..|.
T Consensus 47 ~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~ 82 (84)
T cd05742 47 LSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVN 82 (84)
T ss_pred EEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEE
Confidence 457899999999999999999999999998876663
No 63
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.64 E-value=5.3e-08 Score=59.53 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=31.6
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+.|.|.+++..|.|.|+|+|+|.+|...+++.|.
T Consensus 41 ~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 41 DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence 4799999999999999999999999999988775
No 64
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.64 E-value=6.7e-08 Score=60.36 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=32.0
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
.+.|.|.+++.+|+|.|+|.|.|.+|...++..|.
T Consensus 52 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 86 (88)
T cd04968 52 GAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIY 86 (88)
T ss_pred CCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEE
Confidence 46899999999999999999999999999887764
No 65
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.62 E-value=1e-07 Score=57.44 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=27.6
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l 50 (123)
..|.|.++. |+|.|+|.|.|.+|..+++.+|
T Consensus 38 ~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 38 NVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 479999974 8999999999999999998776
No 66
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.60 E-value=1.7e-07 Score=57.36 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=30.8
Q ss_pred CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (123)
Q Consensus 7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (123)
.++.+.. ..+.|.|.+++.+|+|.|.|.|.|.+|....
T Consensus 29 ~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 66 (77)
T cd05760 29 GNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCS 66 (77)
T ss_pred ccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEee
Confidence 3555542 2458999999999999999999999998754
No 67
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.59 E-value=1.1e-07 Score=59.22 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=30.9
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCc--eeEEEEEEec
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSG 52 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G--~~~~~i~l~~ 52 (123)
..+.|.|.+++.+|+|.|+|.|+|..+ ....++.|.+
T Consensus 44 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V 82 (84)
T cd05861 44 LRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITV 82 (84)
T ss_pred EEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence 367899999999999999999999887 6666666553
No 68
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.58 E-value=1.9e-07 Score=59.20 Aligned_cols=43 Identities=30% Similarity=0.467 Sum_probs=33.4
Q ss_pred CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEEe
Q psy17207 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS 51 (123)
Q Consensus 7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l~ 51 (123)
+|+.+.. ..+.|+|.+++.+|+|.|.|.|.|.+|...+ .+.|.
T Consensus 46 ~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~ 89 (91)
T cd05740 46 PRLQLSN--DNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILN 89 (91)
T ss_pred CCEEEeC--CCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEE
Confidence 4555442 3458999999999999999999999998765 44443
No 69
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.53 E-value=2.8e-07 Score=58.68 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=29.2
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEE
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE 49 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~ 49 (123)
.+.|.|.++..+|+|.|+|+|.|.+|.....+.
T Consensus 51 ~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t 83 (92)
T cd05757 51 GSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT 83 (92)
T ss_pred CCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence 468999999999999999999999998876543
No 70
>KOG3513|consensus
Probab=98.52 E-value=5.8e-07 Score=77.33 Aligned_cols=76 Identities=29% Similarity=0.346 Sum_probs=55.9
Q ss_pred ccccCCC---EEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCC-----CCCCCeEEE
Q psy17207 2 RLETTER---RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ-----GRLPNSYNI 73 (123)
Q Consensus 2 ~l~~d~R---~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~-----~~~~~~~~L 73 (123)
||...+| +.+. .+.|+|++++..|+|+|.|.|+|.+|...++.+|.+.-.+|.|...+. ...+..+.|
T Consensus 371 pl~~~~r~~~~~i~----~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i 446 (1051)
T KOG3513|consen 371 PLEPAERDPRYKID----DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTI 446 (1051)
T ss_pred ecCccCCCcceEEe----CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEE
Confidence 4554555 8885 469999999999999999999999999999988876444333332222 124677888
Q ss_pred EEEeCCCC
Q psy17207 74 TWMVSSYT 81 (123)
Q Consensus 74 ~w~~~s~~ 81 (123)
.|++.+.+
T Consensus 447 ~C~~~asP 454 (1051)
T KOG3513|consen 447 DCKPFASP 454 (1051)
T ss_pred eeccCCCC
Confidence 89887643
No 71
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.50 E-value=2.4e-07 Score=59.14 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=32.3
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
.+.|.|.++..+|+|.|+|+|.|..|.....+.|.
T Consensus 59 ~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~ 93 (94)
T cd05756 59 KDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLT 93 (94)
T ss_pred CCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEE
Confidence 35899999999999999999999999999988775
No 72
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.49 E-value=1.5e-06 Score=66.93 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE----EEEe--ccCCCceeecCC--CCCCCCeEEEEEEe
Q psy17207 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY----LELS--GKPNPAIFRSHP--QGRLPNSYNITWMV 77 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~----i~l~--~~P~p~~~~~~~--~~~~~~~~~L~w~~ 77 (123)
++|+.... .+.|.|.+++.+|.|.|+|.|.|.+|..... +.|. ....||.+..+. ....+..+.|.|.+
T Consensus 168 ~~r~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a 244 (326)
T PHA02785 168 NKRLKQRT---PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRV 244 (326)
T ss_pred CcceEecC---CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEE
Confidence 34555432 3589999999999999999999999876532 3333 223344332211 11236789999999
Q ss_pred CCCCC
Q psy17207 78 SSYTP 82 (123)
Q Consensus 78 ~s~~p 82 (123)
.++++
T Consensus 245 ~g~P~ 249 (326)
T PHA02785 245 SLRPP 249 (326)
T ss_pred ECCCC
Confidence 87765
No 73
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.48 E-value=5.2e-07 Score=55.36 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCEEEEEEcccCC----CCCeeEEEEEEcCCceeEE-EEEE
Q psy17207 6 TERRIMETRGSRHTLMIRKVVA----SDFGNYSCEATNPMGKHRA-YLEL 50 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~----~D~G~YtC~A~N~~G~~~~-~i~l 50 (123)
+.++.+. ...++|.|..+.. .|.|.|+|+|.|.+|.+.+ .+.|
T Consensus 29 ~~~~~~~--~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 29 DPKVTMK--PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CCCEEEe--CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 3455543 2346788888764 3789999999999999887 3443
No 74
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.48 E-value=2.6e-07 Score=57.92 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=31.7
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
..+.|.|.+++.+|+|.|+|.|+|..|....+..|.
T Consensus 48 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~ 83 (86)
T cd05862 48 LSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVI 83 (86)
T ss_pred eeeEEEEecCCcccCEEEEEEEeecceEecccEEEE
Confidence 467899999999999999999999999888766554
No 75
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.48 E-value=5.9e-07 Score=55.13 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=32.2
Q ss_pred ccCCCEEEEEcCCEEEEEEcccCC----CCCeeEEEEEEcCCceeEEE
Q psy17207 4 ETTERRIMETRGSRHTLMIRKVVA----SDFGNYSCEATNPMGKHRAY 47 (123)
Q Consensus 4 ~~d~R~~i~~~~~~~~L~I~~v~~----~D~G~YtC~A~N~~G~~~~~ 47 (123)
..+.|+.+. ...+.|.|..+.. .|+|.|+|+|+|.+|.+.+.
T Consensus 27 ~~~~~~~~~--~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 27 AKDPRVSMR--RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred cCCCcEEEe--CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 456777764 2346899988752 47999999999999988764
No 76
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.47 E-value=3.3e-07 Score=56.55 Aligned_cols=38 Identities=34% Similarity=0.512 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (123)
+.|+.+.. .+.|.|.+++.+|+|.|+|.|.|.+|....
T Consensus 42 ~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 42 NERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 45666543 358999999999999999999999998765
No 77
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.45 E-value=3.6e-07 Score=55.88 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=30.0
Q ss_pred CCCEEEEEcCCEEEEEEcccCC----CCCeeEEEEEEcCCceeEE
Q psy17207 6 TERRIMETRGSRHTLMIRKVVA----SDFGNYSCEATNPMGKHRA 46 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~----~D~G~YtC~A~N~~G~~~~ 46 (123)
+.|+.+. ...+.|.|.++.. .|+|.|+|+|.|.+|.+.+
T Consensus 29 ~~~~~~~--~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 29 DPRVTMK--PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CCCEEEe--CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 3455543 2356899998854 7999999999999998775
No 78
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.44 E-value=2.7e-07 Score=57.18 Aligned_cols=35 Identities=34% Similarity=0.480 Sum_probs=32.1
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
.+.|.|.+++.+|+|.|+|.|.|.+|...++..|+
T Consensus 51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~ 85 (85)
T cd05754 51 NGILTIRNVQLSDAGTYVCTGSNMLDTDEATATLY 85 (85)
T ss_pred CCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEEC
Confidence 46899999999999999999999999999987763
No 79
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.43 E-value=1.1e-06 Score=64.59 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=45.5
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeCC
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSS 79 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s 79 (123)
.+.|.|.+++.+|+|.|+|.|.|..|..+.++.|...+.+.. .....+..+.|.|.+.+
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~----~~~~~G~~v~L~C~~~~ 155 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTIN----YQFNSGKDSKLHCYGTD 155 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCcc----ceEecCCCEEEEeeCCC
Confidence 358999999999999999999999999998888776432211 11124778899998753
No 80
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.40 E-value=5.1e-07 Score=55.07 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=25.4
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCCceeEEE
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAY 47 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~ 47 (123)
++|.|.+++.+|+|.|+|.|.|..+.....
T Consensus 36 ~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~ 65 (72)
T cd07702 36 YSLVIKDVTEEDAGIYTILLGIKQYNLFKN 65 (72)
T ss_pred CEEEECcCCHHHCEEEEEEEEccccceEee
Confidence 479999999999999999999985554443
No 81
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.36 E-value=1.5e-06 Score=53.07 Aligned_cols=37 Identities=30% Similarity=0.528 Sum_probs=33.0
Q ss_pred CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
.....|.|.++..+|.|.|+|.|.|.+|....++.|.
T Consensus 48 ~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 48 KKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred CcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 3456899999999999999999999999999888774
No 82
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.36 E-value=2e-06 Score=54.60 Aligned_cols=41 Identities=29% Similarity=0.380 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCEEEEEEcccC-CCCCeeEEEEEEcCCceeEE-EEEE
Q psy17207 6 TERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRA-YLEL 50 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~-~i~l 50 (123)
+.|+.+. .+.|.|.++. ..|+|.|.|+|.|.+|...+ .+.|
T Consensus 50 ~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 50 ESRYTLV----AGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CceEEEE----CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 3566654 2579998865 59999999999999998876 3443
No 83
>KOG4221|consensus
Probab=98.33 E-value=2.4e-06 Score=74.30 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=53.1
Q ss_pred EEEEEEcccCCCCCeeEEEEEEc--CCceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeC-CCCCCcceEEEeEEc
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATN--PMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVS-SYTPLEEFKIKYRKI 93 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N--~~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~-s~~pi~~y~v~yr~~ 93 (123)
.+.|.|++++..|+|.|+|+|.| ..+.+.+.+.|..+|..+.-..... ...+++++|+.+ +..|+..+.| |+.-
T Consensus 290 ~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~--A~e~~die~ec~~~g~p~p~v~w-~kNg 366 (1381)
T KOG4221|consen 290 GSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLV--AHESMDIEFECPVSGKPIPTVRW-YKNG 366 (1381)
T ss_pred ccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCccee--eeeccceeEeCCCCCCCcceEEE-EecC
Confidence 56899999999999999999999 5555556666666554332222222 233566677654 2347776664 4432
Q ss_pred -CCCCCCceeeee
Q psy17207 94 -PGNEPSPMSNQL 105 (123)
Q Consensus 94 -~~~~~~w~~~~~ 105 (123)
-..+..|.....
T Consensus 367 d~~ipsdy~ki~~ 379 (1381)
T KOG4221|consen 367 DRIIPSDYFKIVG 379 (1381)
T ss_pred cccCcccceEecC
Confidence 222344555443
No 84
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.32 E-value=1.4e-06 Score=55.35 Aligned_cols=41 Identities=32% Similarity=0.406 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCEEEEEEcccC-CCCCeeEEEEEEcCCceeEE-EEEE
Q psy17207 6 TERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRA-YLEL 50 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~-~i~l 50 (123)
++|+.+. .+.|.|.++. ..|+|.|+|+|+|.+|...+ .+.|
T Consensus 49 ~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 49 NDRYSMV----GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEE----CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 3566553 3589999985 69999999999999999865 3444
No 85
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.31 E-value=1.7e-06 Score=54.95 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=25.7
Q ss_pred EEEEEcccC-CCCCeeEEEEEEcCCceeEE
Q psy17207 18 HTLMIRKVV-ASDFGNYSCEATNPMGKHRA 46 (123)
Q Consensus 18 ~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~ 46 (123)
+.|.|.++. ..|+|.|+|+|.|.+|...+
T Consensus 58 g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 58 GNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 579999985 69999999999999998865
No 86
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.30 E-value=2.8e-06 Score=54.11 Aligned_cols=46 Identities=28% Similarity=0.205 Sum_probs=37.3
Q ss_pred CCEEEEE---cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 7 ~R~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
+|+.+.. .....+|+|.+++.+|+|.|+|.+.|.-|..++.+.|..
T Consensus 51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 51 GRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred ceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 5776642 234578999999999999999999999888888887753
No 87
>smart00409 IG Immunoglobulin.
Probab=98.29 E-value=5.9e-06 Score=49.16 Aligned_cols=47 Identities=34% Similarity=0.508 Sum_probs=39.6
Q ss_pred cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
.++|+.+........|.|.+++..|+|.|+|.+.|..|.....+.|.
T Consensus 38 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00409 38 ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 45778777665578999999999999999999999999888776664
No 88
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.29 E-value=5.9e-06 Score=49.16 Aligned_cols=47 Identities=34% Similarity=0.508 Sum_probs=39.6
Q ss_pred cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
.++|+.+........|.|.+++..|+|.|+|.+.|..|.....+.|.
T Consensus 38 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00410 38 ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 45778777665578999999999999999999999999888776664
No 89
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.28 E-value=3.7e-06 Score=53.81 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=28.8
Q ss_pred cCCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207 5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN 39 (123)
Q Consensus 5 ~d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N 39 (123)
.+.|+.+.. ......|.|.+++.+|.|.|+|.|..
T Consensus 48 ~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 48 RDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred eCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 467887643 33468999999999999999999998
No 90
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.28 E-value=2.9e-06 Score=53.80 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=34.9
Q ss_pred cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEE-cCCceeEEEEEEec
Q psy17207 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEAT-NPMGKHRAYLELSG 52 (123)
Q Consensus 5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~i~l~~ 52 (123)
.++|+.+. .+.|.|.+++.+|+|.|+|.|. |.+|...+.++|.+
T Consensus 44 ~~~r~~~~----~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v 88 (91)
T cd05871 44 TEERLIHT----ERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHV 88 (91)
T ss_pred ccccEEEe----cCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEE
Confidence 34677653 2469999999999999999998 68888888777654
No 91
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.27 E-value=3.2e-06 Score=53.42 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=29.4
Q ss_pred CCCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207 6 TERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPM 41 (123)
Q Consensus 6 d~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 41 (123)
+.||.+. ..+....|+|.+++.+|+|.|+|.+.+..
T Consensus 49 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 49 DNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred cCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 4788774 23345789999999999999999999875
No 92
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.27 E-value=2.8e-06 Score=53.34 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCEEEEEEcccCC-CCCeeEEEEEEcCCceeEE
Q psy17207 6 TERRIMETRGSRHTLMIRKVVA-SDFGNYSCEATNPMGKHRA 46 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~G~~~~ 46 (123)
+.|+.+. .+.|.|.++.. .|+|.|+|+|+|.+|...+
T Consensus 50 ~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 50 DSRYSLV----GGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEE----CCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 3455543 24799998875 9999999999999998765
No 93
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.26 E-value=5.2e-06 Score=52.92 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=30.0
Q ss_pred cCCCEEEEEc-CCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207 5 TTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPM 41 (123)
Q Consensus 5 ~d~R~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~ 41 (123)
.++|+.+... ....+|.|.+++.+|+|.|+|.+.+.-
T Consensus 48 ~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 48 RDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred cCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeec
Confidence 4678876433 456789999999999999999999853
No 94
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.24 E-value=1e-06 Score=56.73 Aligned_cols=39 Identities=38% Similarity=0.577 Sum_probs=30.7
Q ss_pred ccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee
Q psy17207 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH 44 (123)
Q Consensus 4 ~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~ 44 (123)
..|+|..+.. ..+.|.|.+++.+|+|+|+|.|+|.++..
T Consensus 48 ~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 48 PEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 3456665542 35699999999999999999999987554
No 95
>KOG4194|consensus
Probab=98.18 E-value=1.3e-05 Score=66.19 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=53.0
Q ss_pred CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE--EEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCC
Q psy17207 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTP 82 (123)
Q Consensus 7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~p 82 (123)
.|..++.+ +-.+.|.|+..+|.|.|+|.|.|.+|...+. +.|.+.|.+........-.-++.+.|.|..++.++
T Consensus 660 RRl~Vmpe--dd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a 735 (873)
T KOG4194|consen 660 RRLHVMPE--DDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPA 735 (873)
T ss_pred heeeecCC--CCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCC
Confidence 45555543 3578999999999999999999999998875 45556676544333222225788899999876544
No 96
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.17 E-value=8.7e-06 Score=51.00 Aligned_cols=42 Identities=31% Similarity=0.385 Sum_probs=27.2
Q ss_pred EEEEcCCEEEEEEc--ccCCCCCeeEEEEEEcCCcee-EEEEEEe
Q psy17207 10 IMETRGSRHTLMIR--KVVASDFGNYSCEATNPMGKH-RAYLELS 51 (123)
Q Consensus 10 ~i~~~~~~~~L~I~--~v~~~D~G~YtC~A~N~~G~~-~~~i~l~ 51 (123)
.+...+....+.|. .+...|+|.|+|+|+|.+|.+ ...+.|.
T Consensus 54 ~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 98 (100)
T cd07693 54 IVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLE 98 (100)
T ss_pred EEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEE
Confidence 33334433344333 347899999999999999994 4445443
No 97
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.16 E-value=7.8e-06 Score=52.76 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=37.6
Q ss_pred CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEc-CCceeEEEEEEec
Q psy17207 7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELSG 52 (123)
Q Consensus 7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~i~l~~ 52 (123)
+|..+.. ...+.+|.|++++.+|.|.|+|...| ..|..++.+.|.+
T Consensus 51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 6777642 33567899999999999999999999 7888888887753
No 98
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.13 E-value=9.1e-06 Score=52.27 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=37.8
Q ss_pred CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
.|+.+.. .....+|.|++++.+|+|.|.|.+.+..|.....+.|..
T Consensus 56 ~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v 102 (106)
T cd05877 56 GRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRL 102 (106)
T ss_pred CcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEE
Confidence 5777642 234668999999999999999999999999888887754
No 99
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.12 E-value=5.2e-06 Score=53.31 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=25.4
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHR 45 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~ 45 (123)
...|.|.++..+|+|.|+|+|.|..|...
T Consensus 54 ~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 54 STYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred CCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 35799999999999999999999976554
No 100
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.12 E-value=1.3e-05 Score=51.54 Aligned_cols=46 Identities=33% Similarity=0.491 Sum_probs=36.5
Q ss_pred CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEc-CCceeEEEEEEec
Q psy17207 7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELSG 52 (123)
Q Consensus 7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~i~l~~ 52 (123)
+|..+.. ......|+|++++.+|+|.|+|...| ..|..++.+.|.+
T Consensus 51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 5777753 23467899999999999999999998 6787777776653
No 101
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.09 E-value=4.3e-06 Score=53.50 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=26.8
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHR 45 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~ 45 (123)
....|+|.+++.+|+|.|+|.+.|..++.+
T Consensus 63 g~~~L~I~~l~~sDsgtY~C~v~~~~~~~~ 92 (94)
T cd07690 63 GSFPLIIKNLKIEDSDTYICEVEDKKEEVE 92 (94)
T ss_pred CeEEEEECCCCHHHCEEEEEEECCccceEE
Confidence 356799999999999999999999988765
No 102
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.09 E-value=1.1e-05 Score=51.76 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=30.2
Q ss_pred cCCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207 5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN 39 (123)
Q Consensus 5 ~d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N 39 (123)
.|+||.... .+...+|+|++++.+|+|.|+|.+..
T Consensus 48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 48 KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 688998764 46677899999999999999998875
No 103
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.08 E-value=1.6e-05 Score=51.79 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=34.8
Q ss_pred cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC-ceeEEEEEEe
Q psy17207 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM-GKHRAYLELS 51 (123)
Q Consensus 5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~i~l~ 51 (123)
.++|..+..+ ++|.|++++..|+|.|+|.+.|.- ...++.++|.
T Consensus 60 ~~gR~~~~~n---gSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 60 YSGRETIYPN---GSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred cCCcEEEeCC---CcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 4578887654 499999999999999999999986 4555666653
No 104
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.08 E-value=6.6e-06 Score=51.95 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=28.0
Q ss_pred ccccC-CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207 2 RLETT-ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM 41 (123)
Q Consensus 2 ~l~~d-~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 41 (123)
+|..+ .|+.+. .+.|.|.+++.+|+|.|+|.|.+.-
T Consensus 35 ~i~~~~~r~~~~----~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 35 VLTPESAKYLLY----RDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ECCCCCceEEEE----CCcEEEeCCCHHHCEEEEEEEEecc
Confidence 34445 577654 2469999999999999999999863
No 105
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.08 E-value=1.7e-05 Score=50.10 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=29.3
Q ss_pred CEEEEEcCCEEEEEEccc-----CCCCCeeEEEEEEcC-CceeEE-EEEE
Q psy17207 8 RRIMETRGSRHTLMIRKV-----VASDFGNYSCEATNP-MGKHRA-YLEL 50 (123)
Q Consensus 8 R~~i~~~~~~~~L~I~~v-----~~~D~G~YtC~A~N~-~G~~~~-~i~l 50 (123)
|+.+... +.|.|.++ ...|.|.|.|.|.|. +|...+ .+.|
T Consensus 47 ~~~~~~~---~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l 93 (95)
T cd05722 47 RRQQLPN---GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARL 93 (95)
T ss_pred ceEEccC---CeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEE
Confidence 4554432 35777776 589999999999999 999854 4554
No 106
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.07 E-value=2.3e-05 Score=49.42 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=34.9
Q ss_pred CCEEEEEcC-CEEEEEEcccCCCCCeeEEEEEEc-CCceeEEEEEEec
Q psy17207 7 ERRIMETRG-SRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELSG 52 (123)
Q Consensus 7 ~R~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~i~l~~ 52 (123)
.|..+.... ....|+|++++.+|+|.|.|.+.+ ..|..+..+.|.+
T Consensus 50 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 50 GRVSFLNSSLEDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred ceEEEeCCCCCceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 455544221 467899999999999999999875 6788888777653
No 107
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.03 E-value=5.3e-06 Score=53.28 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=31.6
Q ss_pred cccCCCEEEEEcCCEEEEEEcccCCCCCe-eEEEEEEcCCcee
Q psy17207 3 LETTERRIMETRGSRHTLMIRKVVASDFG-NYSCEATNPMGKH 44 (123)
Q Consensus 3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G-~YtC~A~N~~G~~ 44 (123)
+..|+|+.+.. .+.|.|.+++.+|.| .|.|.|+|.....
T Consensus 46 i~~~~Ri~~~~---~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 46 ITQDERVSMGQ---NGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred ccccccEEECC---CceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 45678887753 369999999999999 8999999986443
No 108
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.99 E-value=1.9e-05 Score=50.82 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=33.0
Q ss_pred CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
....+|+|++++.+|+|.|.|.+.|..+.....++|..
T Consensus 65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V 102 (106)
T cd05714 65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEV 102 (106)
T ss_pred CCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEE
Confidence 45678999999999999999999999888888777654
No 109
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.96 E-value=1e-05 Score=45.64 Aligned_cols=27 Identities=44% Similarity=0.689 Sum_probs=24.3
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMG 42 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (123)
....|.|.++...|+|.|+|.+.|..|
T Consensus 37 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 37 SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 346899999999999999999999876
No 110
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.95 E-value=2.5e-05 Score=51.09 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=34.5
Q ss_pred CCEEEEE---cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 7 ~R~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+|+++.. ......|+|++++.+|+|.|.|......+..+..+.|.
T Consensus 58 gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~ 105 (110)
T cd05878 58 GRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLE 105 (110)
T ss_pred CeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEE
Confidence 5777742 23567899999999999999999987766666665554
No 111
>KOG4222|consensus
Probab=97.93 E-value=1.8e-05 Score=68.62 Aligned_cols=45 Identities=36% Similarity=0.501 Sum_probs=35.5
Q ss_pred CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE---EEEEeccC
Q psy17207 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKP 54 (123)
Q Consensus 7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~i~l~~~P 54 (123)
+++.+. ..+.|.|.++.+.|.|.|.|+|.|.+|..+. .+.+.++|
T Consensus 179 ~~~~li---sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P 226 (1281)
T KOG4222|consen 179 PIIALI---SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKP 226 (1281)
T ss_pred eeEEEe---cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCC
Confidence 445444 3569999999999999999999999999986 35555544
No 112
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.90 E-value=3.5e-05 Score=50.80 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=35.6
Q ss_pred CCEEEEE---cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 7 ~R~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+|+++.. .....+|+|.+++.+|+|.|.|...+.+......+.|.
T Consensus 60 ~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~ 107 (112)
T cd05900 60 DRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQ 107 (112)
T ss_pred CeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEE
Confidence 4787754 33568999999999999999999998777666665554
No 113
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.88 E-value=1.9e-05 Score=49.01 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=24.7
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (123)
..+.|.|.++ .|.|.|.|+|.|.+|...+
T Consensus 47 ~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 47 SPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 3468999987 5889999999999998775
No 114
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.82 E-value=8.4e-05 Score=47.73 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=36.2
Q ss_pred CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcC-CceeEEEEEEe
Q psy17207 7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNP-MGKHRAYLELS 51 (123)
Q Consensus 7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~-~G~~~~~i~l~ 51 (123)
+|..+.. ...+.+|+|++++.+|.|.|+|...+- .|..++.|.|.
T Consensus 48 ~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 48 GRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV 94 (96)
T ss_pred CeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 5777652 235679999999999999999977665 88888888775
No 115
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.82 E-value=4.6e-05 Score=48.96 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=30.8
Q ss_pred cCCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207 5 TTERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG 42 (123)
Q Consensus 5 ~d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (123)
.++|+.+... .....|.|++++.+|+|.|.|.+.+..|
T Consensus 55 ~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~ 94 (109)
T cd04983 55 EKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESGG 94 (109)
T ss_pred cCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 4578877543 3577899999999999999999997643
No 116
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.80 E-value=4.2e-05 Score=48.62 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=30.9
Q ss_pred CCCEEEEEcC--CEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207 6 TERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNPMG 42 (123)
Q Consensus 6 d~R~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (123)
.+|+.+.... ....|+|++++.+|+|.|.|.+.+..+
T Consensus 53 ~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 53 KGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 4688775443 577899999999999999999998776
No 117
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.79 E-value=7.3e-05 Score=47.67 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE-EEEEE
Q psy17207 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLEL 50 (123)
Q Consensus 7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~~i~l 50 (123)
+|+.+ .....+|+|++++.+|+|.|.|...+..|... ..+.|
T Consensus 52 ~R~~~--~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L 94 (97)
T cd05775 52 ERVNF--SQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTL 94 (97)
T ss_pred eeEEe--cCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEE
Confidence 35555 34468899999999999999999998877664 34444
No 118
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.76 E-value=3e-05 Score=45.64 Aligned_cols=25 Identities=48% Similarity=0.703 Sum_probs=22.7
Q ss_pred CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207 15 GSRHTLMIRKVVASDFGNYSCEATN 39 (123)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N 39 (123)
...+.|.|.++..+|.|.|+|+|.|
T Consensus 51 ~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 51 SSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3467899999999999999999998
No 119
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.74 E-value=5.3e-05 Score=47.19 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=27.5
Q ss_pred EEEEEcccCCCCCeeEEEEEEcC-CceeEEEEEEec
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNP-MGKHRAYLELSG 52 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~-~G~~~~~i~l~~ 52 (123)
..|.|.+++.+|+|.|.|.|.|. .+....++.|.+
T Consensus 51 ~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V 86 (89)
T cd04979 51 DGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNV 86 (89)
T ss_pred CCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEE
Confidence 35999999999999999999875 455555666653
No 120
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.74 E-value=0.00013 Score=46.90 Aligned_cols=45 Identities=27% Similarity=0.410 Sum_probs=35.9
Q ss_pred CCEEEE-EcCCEEEEEEcccCCCCCeeEEEE-EEcCCceeEEEEEEe
Q psy17207 7 ERRIME-TRGSRHTLMIRKVVASDFGNYSCE-ATNPMGKHRAYLELS 51 (123)
Q Consensus 7 ~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~-A~N~~G~~~~~i~l~ 51 (123)
+|..+. ....+.+|.|++++.+|.|.|+|. +....|...+++.|.
T Consensus 48 ~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~ 94 (96)
T cd05887 48 GRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVT 94 (96)
T ss_pred CcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEE
Confidence 577764 234467999999999999999997 566799998887765
No 121
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.70 E-value=9.6e-05 Score=45.95 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=28.8
Q ss_pred CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45 (123)
Q Consensus 7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~ 45 (123)
+|+.+..+ +.|.|.+++.+|+|.|+|...+..|...
T Consensus 49 ~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~~~~~~~~ 84 (92)
T cd05741 49 GRETIYPN---GSLLIQNLTKEDSGTYTLQIISTNGVTE 84 (92)
T ss_pred CeEEEcCC---ceEEEccCCchhcEEEEEEEEcCCCcEE
Confidence 56666532 7899999999999999999998865544
No 122
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.69 E-value=9e-05 Score=47.02 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N 39 (123)
++|+.....+....|+|++++.+|+|.|.|.+.+
T Consensus 51 ~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 51 PDRFSGSKSGNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred CCCEEEEccCCEEEEEECCCChhhCEEEEEEEcc
Confidence 4688887767788999999999999999998875
No 123
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.68 E-value=4.9e-05 Score=47.19 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=25.8
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHR 45 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~ 45 (123)
...|.|.+++.+|+|.|+|.|.|..|...
T Consensus 47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 47 NSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred CceEEECccCHHHCEEEEEEEEeCCceec
Confidence 46899999999999999999999988544
No 124
>PHA02785 IL-beta-binding protein; Provisional
Probab=97.65 E-value=0.00026 Score=54.49 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=29.9
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
..|.|.++..+|+|.|+|+|.|..|....++.|..
T Consensus 82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V 116 (326)
T PHA02785 82 SNMLILNPTQSDSGIYICITKNETYCDMMSLNLTI 116 (326)
T ss_pred ceEEEcccCcccCeEEEEEEECCCcceEEEEEEEE
Confidence 35889999999999999999999998887765543
No 125
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.63 E-value=0.00014 Score=47.42 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=30.9
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
...|.|.++..+|+|.|+|++.|.-.....++.|.
T Consensus 69 ~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 69 EDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLT 103 (104)
T ss_pred CCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEE
Confidence 45899999999999999999999988888777664
No 126
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.63 E-value=0.0002 Score=46.88 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=27.8
Q ss_pred CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207 7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGK 43 (123)
Q Consensus 7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (123)
.|+.+.. .....+|+|.+++.+|+|.|.|.+.|.-+.
T Consensus 67 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 67 DRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred CcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeCCCC
Confidence 4555542 234578999999999999999999987543
No 127
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.63 E-value=0.00017 Score=46.85 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=33.6
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
..+.|.+..+..+|+|.|+|.|.|..+.+..++.|..
T Consensus 63 Y~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v 99 (101)
T cd05860 63 YVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYV 99 (101)
T ss_pred EEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEE
Confidence 4578999999999999999999999999999988763
No 128
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.61 E-value=4.5e-05 Score=46.93 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=21.4
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNP 40 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (123)
..+.|+|.++ .+|+|.|+|.|.|.
T Consensus 45 ~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 45 TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred cCCeEEEeec-ccCCEEeEEECCCC
Confidence 4568999999 99999999999985
No 129
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=97.61 E-value=0.00012 Score=53.94 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=30.4
Q ss_pred ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM 41 (123)
Q Consensus 2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 41 (123)
+|..++|+.+.. ..+.|.|.+++.+|+|.|+|+|....
T Consensus 174 ~l~~~~r~~~~~--~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 174 IVLYTDRIQLRN--NNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred ECCCCCCEEEeC--CCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 355667877653 34589999999999999999999874
No 130
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.61 E-value=0.00011 Score=47.61 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=29.7
Q ss_pred CCCEEEEEcC-CEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207 6 TERRIMETRG-SRHTLMIRKVVASDFGNYSCEATNPMG 42 (123)
Q Consensus 6 d~R~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (123)
++|+.+.... ....|+|.+++.+|+|.|.|.+.+..|
T Consensus 59 ~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~~ 96 (110)
T cd05899 59 KDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLGGG 96 (110)
T ss_pred CCceEEECcCCCccEEEECCCChhhCEEEEEEeeCCCC
Confidence 4788775433 567899999999999999999987543
No 131
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.60 E-value=9.6e-05 Score=47.55 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP 40 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (123)
.+|+.....+....|+|++++.+|+|.|.|.+.+.
T Consensus 59 ~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 59 PSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CCCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 36888765566778999999999999999998764
No 132
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.60 E-value=0.0002 Score=47.46 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=29.8
Q ss_pred CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207 7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGK 43 (123)
Q Consensus 7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (123)
+|+.+.. ...+.+|.|++++.+|.|.|+|...|.-+.
T Consensus 67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCc
Confidence 5887753 235678999999999999999999997553
No 133
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.52 E-value=0.00028 Score=46.34 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=35.5
Q ss_pred CCEEEEEc---CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 7 ERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 7 ~R~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
+|.++..+ ....+|.|++++.+|+|.|.|.........+..+.|..
T Consensus 58 gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V 106 (110)
T cd05902 58 GRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEV 106 (110)
T ss_pred cEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEE
Confidence 57777542 24679999999999999999999987666666666643
No 134
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.51 E-value=0.00037 Score=44.16 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=28.8
Q ss_pred CCCEEEEEcC--CEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207 6 TERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNP 40 (123)
Q Consensus 6 d~R~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (123)
.+|+.+..+. ...+|.|.+++.+|+|.|.|.....
T Consensus 65 ~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 65 SGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp TTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred eeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 4677766543 4788999999999999999998886
No 135
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.50 E-value=0.00048 Score=45.82 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=36.4
Q ss_pred CCEEEEEc---CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 7 ERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 7 ~R~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
+|.++..+ ....+|.|.+++.+|+|.|.|...+.....+.++.|..
T Consensus 65 gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V 113 (117)
T cd05901 65 GRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV 113 (117)
T ss_pred CcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence 46666432 24678999999999999999999988888887776653
No 136
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.50 E-value=0.00039 Score=43.66 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=30.0
Q ss_pred ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45 (123)
Q Consensus 2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~ 45 (123)
+|..|+|+..... .|.|.+++..|+|.|.|.|. +.|-..
T Consensus 35 ~l~~~~r~~~~~~----GLlI~~~~~~dsG~Y~C~s~-E~gf~~ 73 (85)
T cd05872 35 PLNAQFSYRVGTD----GLLILVTSPEHSGTYRCYSE-EEGFQQ 73 (85)
T ss_pred ccCCCcceEEeCC----CCEEEECCHhhCEEEEEEEe-cCCCeE
Confidence 4667888887654 38899999999999999887 344443
No 137
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.48 E-value=9.2e-05 Score=42.90 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=17.5
Q ss_pred EEEcccCCCCCeeEEEEE
Q psy17207 20 LMIRKVVASDFGNYSCEA 37 (123)
Q Consensus 20 L~I~~v~~~D~G~YtC~A 37 (123)
|.|.+++.+|+|.|+|.|
T Consensus 47 L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEESSCTGGGTEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEC
Confidence 999999999999999986
No 138
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.47 E-value=0.00024 Score=46.73 Aligned_cols=37 Identities=22% Similarity=0.483 Sum_probs=28.2
Q ss_pred CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207 7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGK 43 (123)
Q Consensus 7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (123)
+|+.+.. .....+|+|++++.+|+|.|+|.+.|.-+.
T Consensus 66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 66 GRVVWDGNIMRRDASILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CeEEEecCCcCCceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence 3554432 234667999999999999999999987654
No 139
>PHA02633 hypothetical protein; Provisional
Probab=97.45 E-value=0.00045 Score=40.86 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=32.6
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
+...|.|-++..+|+|.|+|+-.|.-=..+.++.|..
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V 52 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCI 52 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEE
Confidence 4568999999999999999999998888888887775
No 140
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.42 E-value=0.00021 Score=42.80 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=26.3
Q ss_pred CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEE
Q psy17207 6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCE 36 (123)
Q Consensus 6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~ 36 (123)
.+|+.+... .....|.|++++.+|+|.|.|.
T Consensus 48 ~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 48 KGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 478887654 6678899999999999999995
No 141
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.38 E-value=0.00033 Score=45.60 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=28.6
Q ss_pred CCCEEEEEcC--CEEEEEEcccCCCCCeeEEEEEEc
Q psy17207 6 TERRIMETRG--SRHTLMIRKVVASDFGNYSCEATN 39 (123)
Q Consensus 6 d~R~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N 39 (123)
..|+.+.... ....|+|.+++.+|+|.|.|.+..
T Consensus 63 ~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 63 KNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 4688876554 578999999999999999998864
No 142
>KOG4221|consensus
Probab=97.38 E-value=0.00038 Score=61.09 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=59.4
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEE--E---EEeccCCCceeecCCCCCCCCeEEEEEEeCC----CCCCcce
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAY--L---ELSGKPNPAIFRSHPQGRLPNSYNITWMVSS----YTPLEEF 86 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--i---~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s----~~pi~~y 86 (123)
+...++|+++.+.+.=.|.|+|.|.+|...++ | .+.+.|.+|..........+.++.+.|.++. ...|+.|
T Consensus 572 n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgY 651 (1381)
T KOG4221|consen 572 NATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGY 651 (1381)
T ss_pred CccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEE
Confidence 45689999999999999999999999988764 3 3346676554322223346899999999642 3567889
Q ss_pred EEEeEEcCC
Q psy17207 87 KIKYRKIPG 95 (123)
Q Consensus 87 ~v~yr~~~~ 95 (123)
++.|+....
T Consensus 652 kIRy~~~~~ 660 (1381)
T KOG4221|consen 652 KIRYRKLSR 660 (1381)
T ss_pred EEEecccCc
Confidence 999997643
No 143
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.35 E-value=0.00054 Score=43.43 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=32.3
Q ss_pred CCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEE-cCCceeEEEEEEe
Q psy17207 7 ERRIME-TRGSRHTLMIRKVVASDFGNYSCEAT-NPMGKHRAYLELS 51 (123)
Q Consensus 7 ~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~i~l~ 51 (123)
+|+.+. .......|+|++++.+|+|.|.|... ...|.....+.|.
T Consensus 49 ~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~ 95 (97)
T cd05846 49 RRRSITSLGLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLT 95 (97)
T ss_pred CeEEEcCCCCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEE
Confidence 455543 22356789999999999999999755 5567666666654
No 144
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.34 E-value=0.00032 Score=45.22 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N 39 (123)
..|+.+........|+|++++.+|+|.|.|...+
T Consensus 57 ~~rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 57 SKRFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred CceEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence 4678876656788899999999999999998764
No 145
>KOG4222|consensus
Probab=97.27 E-value=0.00064 Score=59.40 Aligned_cols=75 Identities=23% Similarity=0.272 Sum_probs=54.3
Q ss_pred CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE--EEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCCC
Q psy17207 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPL 83 (123)
Q Consensus 7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi 83 (123)
.||.|.- ...+|.|.+++..|.|.|.|.|.|.+|..++. +.|.++|....-...........+.|.|++.+.+|.
T Consensus 269 ~ry~i~~--d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~P 345 (1281)
T KOG4222|consen 269 SRYSILD--DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPP 345 (1281)
T ss_pred cceeeee--ccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCc
Confidence 5787763 34689999999999999999999999999874 555555544332222222346678889998877654
No 146
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.20 E-value=0.0006 Score=44.03 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=27.0
Q ss_pred CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207 6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATN 39 (123)
Q Consensus 6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N 39 (123)
.+|+.+. ..+....|+|.+++.+|+|.|.|...+
T Consensus 58 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 58 QEKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred cCcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEcC
Confidence 4688763 334567899999999999999998763
No 147
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.16 E-value=0.00059 Score=40.58 Aligned_cols=32 Identities=34% Similarity=0.648 Sum_probs=25.2
Q ss_pred EEEcccCCCCCeeEEEEEEcCCc-eeEEEEEEe
Q psy17207 20 LMIRKVVASDFGNYSCEATNPMG-KHRAYLELS 51 (123)
Q Consensus 20 L~I~~v~~~D~G~YtC~A~N~~G-~~~~~i~l~ 51 (123)
|.|.++..+|.|.|+|.|.|..| .....+.|.
T Consensus 47 ~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~ 79 (80)
T PF13895_consen 47 LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT 79 (80)
T ss_dssp EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence 78899999999999999999665 344455553
No 148
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.14 E-value=0.00068 Score=44.23 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=28.8
Q ss_pred CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207 6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP 40 (123)
Q Consensus 6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (123)
++|+++.. ......|+|.+++.+|+|.|.|.+.+.
T Consensus 58 ~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 58 KGRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred CCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence 57998863 345678999999999999999988853
No 149
>KOG4194|consensus
Probab=97.10 E-value=0.0011 Score=55.25 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=41.6
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEE---EEEeccCCCceeecCCCCCCCCeEEEEEEeCCC
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAY---LELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY 80 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~---i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~ 80 (123)
..+.|...+|...|.|.|.|+++|.+|++.+. +.|...|....-+.......+.-..|.|.+.+.
T Consensus 572 ~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~ 639 (873)
T KOG4194|consen 572 YTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGH 639 (873)
T ss_pred hhheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCC
Confidence 34679999999999999999999999999873 444444432211111111134445566665443
No 150
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.04 E-value=0.0011 Score=43.58 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=27.4
Q ss_pred CCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207 7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP 40 (123)
Q Consensus 7 ~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (123)
+|+++. .......|+|++++.+|+|.|.|.....
T Consensus 67 gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 67 GRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 588774 2455678999999999999999987653
No 151
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.94 E-value=0.0021 Score=40.53 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=28.7
Q ss_pred CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207 6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM 41 (123)
Q Consensus 6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 41 (123)
.+|+.+.. ......|+|.+++.+|+|.|.|.+.+..
T Consensus 50 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 50 EGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 46887753 2456789999999999999999888754
No 152
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.77 E-value=0.0015 Score=40.99 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207 15 GSRHTLMIRKVVASDFGNYSCEATNP 40 (123)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (123)
+....|.|.+++.+|+|.|+|...|.
T Consensus 50 ~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 50 QNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred ceeEEEEccCCChhHCEEEEEEEECC
Confidence 34567999999999999999999885
No 153
>PHA03376 BARF1; Provisional
Probab=96.55 E-value=0.024 Score=41.02 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=31.1
Q ss_pred ccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG 42 (123)
Q Consensus 4 ~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (123)
+.-.|+.+..+.+.-+|.|.+++.+|.|.|+|+-.-.-.
T Consensus 73 EyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~ 111 (221)
T PHA03376 73 PFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGET 111 (221)
T ss_pred ccccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCC
Confidence 344677776667788999999999999999998876443
No 154
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=96.52 E-value=0.003 Score=39.21 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=25.3
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCcee
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKH 44 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~ 44 (123)
.++|.|......|.+.|+|.|.|..+..
T Consensus 42 ~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 42 SNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 4589999999999999999999998764
No 155
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.50 E-value=0.0073 Score=33.40 Aligned_cols=28 Identities=39% Similarity=0.654 Sum_probs=24.0
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGK 43 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (123)
....|.|.++...|.|.|.|.+.+..+.
T Consensus 41 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 68 (74)
T cd00096 41 GSSTLTISNVTLEDSGTYTCVASNSAGT 68 (74)
T ss_pred eEEEEEECccCcccCcEEEEEEecCcCc
Confidence 4568999999999999999999987633
No 156
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=96.36 E-value=0.01 Score=42.48 Aligned_cols=46 Identities=17% Similarity=0.243 Sum_probs=33.2
Q ss_pred CCEEE-EEcCCEEEEEEcccCCCCCeeEEEEEEc-CCc-eeEEEEEEec
Q psy17207 7 ERRIM-ETRGSRHTLMIRKVVASDFGNYSCEATN-PMG-KHRAYLELSG 52 (123)
Q Consensus 7 ~R~~i-~~~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G-~~~~~i~l~~ 52 (123)
+|+.+ ...-....|+|.+++.+|+|.|+|.-.- ..| ..+++..|..
T Consensus 73 ~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtV 121 (189)
T PHA02987 73 NKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNV 121 (189)
T ss_pred CeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEE
Confidence 47764 3444567899999999999999996543 346 5666666654
No 157
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.36 E-value=0.0046 Score=40.68 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=26.8
Q ss_pred CCEEEEEcC--CEEEEEEcccCCCCCeeEEEEEEc
Q psy17207 7 ERRIMETRG--SRHTLMIRKVVASDFGNYSCEATN 39 (123)
Q Consensus 7 ~R~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N 39 (123)
+|+.+..+. ....|+|.+++.+|+|.|.|.+..
T Consensus 63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 688776433 455799999999999999998765
No 158
>PHA02982 hypothetical protein; Provisional
Probab=96.21 E-value=0.1 Score=38.32 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEEeccCCCceeecCCCCCCCCeEEEEEEeCCC-CCC
Q psy17207 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY-TPL 83 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~-~pi 83 (123)
-++|.+.-.++.++|+|.++..+..|-|+|+|...-|..+. .-.|.. ..+.+.+.|.-..+ .-+
T Consensus 88 kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V--------------~~~~V~~~W~e~nNeT~V 153 (251)
T PHA02982 88 KDKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEI--------------QKEDILYVVEEHNNETII 153 (251)
T ss_pred ceeEEEEEeccceeEEeccCCcccCCceEEEEecCCCchheeheeeeE--------------ecceEEEEEEecCCeEEE
Confidence 35677777889999999999999999999999976655554 111111 13445666764222 222
Q ss_pred cceEEEeEEcCCCCCCceeeeecccccccc
Q psy17207 84 EEFKIKYRKIPGNEPSPMSNQLTGTNQYQN 113 (123)
Q Consensus 84 ~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~ 113 (123)
.=|...|... -+.|+..-...+.++++
T Consensus 154 ~CyVgS~~~d---vp~W~V~GVvttGg~~s 180 (251)
T PHA02982 154 TCFVGSKHGD---VPRFIVAGIVTTGGPMS 180 (251)
T ss_pred EEEEEeccCC---CccEEEeeEEecCCccc
Confidence 2244433321 14676666655555554
No 159
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.11 E-value=0.015 Score=35.38 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.0
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCC
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPM 41 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~ 41 (123)
+.|.|......|.|.|+|+|.|..
T Consensus 46 s~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 46 STLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred EEEEEeCceecCCCEEEEEEcCcc
Confidence 578898888889999999999974
No 160
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.03 E-value=0.031 Score=42.00 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=27.4
Q ss_pred cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM 41 (123)
Q Consensus 3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 41 (123)
|....++.+... +.|.+.+++.+++|.|+|..+=..
T Consensus 25 l~gn~~~nIT~T---G~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 25 LSGNSYVNITET---GKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred cCCCCeEEEccC---ceEEeeccccccCCceEEEEEEEe
Confidence 444456666654 479999999999999999877544
No 161
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=94.73 E-value=0.23 Score=29.42 Aligned_cols=52 Identities=15% Similarity=0.420 Sum_probs=34.5
Q ss_pred CCCeEEEEEEeCC--CCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207 67 LPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE 122 (123)
Q Consensus 67 ~~~~~~L~w~~~s--~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 122 (123)
..+++.|.|..+. ..++..|.|+|+...... .|........ .+...+..|.+
T Consensus 12 ~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~-~~~~~~~~~~---~~~~~i~~L~p 65 (85)
T PF00041_consen 12 SPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTS-DWQEVTVPGN---ETSYTITGLQP 65 (85)
T ss_dssp CSSEEEEEEEESSSTSSSESEEEEEEEETTSSS-EEEEEEEETT---SSEEEEESCCT
T ss_pred CCCEEEEEEECCCCCCCCeeEEEEEEEecccce-eeeeeeeeee---eeeeeeccCCC
Confidence 5789999999874 788999999999875422 2444443322 22455665544
No 162
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=93.71 E-value=0.11 Score=32.01 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.4
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPMG 42 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G 42 (123)
+.|.|......|.|.|+|+|.+...
T Consensus 62 s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 62 SQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred EEEEECHHHhCCCCCEEEEEEeCCC
Confidence 4677877777899999999998654
No 163
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=93.63 E-value=0.11 Score=32.70 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEEEcccCCCCCeeEEEEEE
Q psy17207 17 RHTLMIRKVVASDFGNYSCEAT 38 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~ 38 (123)
...+.|..++.+|+|.|.|...
T Consensus 54 ~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 54 QASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEEEEecCCCcccCEEEEEEEE
Confidence 4578999999999999999765
No 164
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=92.78 E-value=0.1 Score=35.31 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=25.9
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
.+|.+...+.- .|+|+|.+.....+.+..++|..
T Consensus 86 aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 86 ASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp --EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence 44777775555 89999999999999998888875
No 165
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.27 E-value=0.35 Score=31.66 Aligned_cols=38 Identities=29% Similarity=0.354 Sum_probs=29.8
Q ss_pred CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (123)
Q Consensus 7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (123)
.||.+.. ..-.|.|+.++..|+|.|.-..+|.-|..-.
T Consensus 62 ~r~~F~~--enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~ 99 (108)
T PF11465_consen 62 NRFNFTS--ENLALLIKAAQPQDSGLYCLEVTNESGKVCT 99 (108)
T ss_dssp HHEEEET--TTTEEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred ceEeeec--cCceEEEeecCcccCceEEEEEEcCCCcEEE
Confidence 4677763 2358999999999999999999999998854
No 166
>KOG3515|consensus
Probab=91.66 E-value=0.53 Score=40.34 Aligned_cols=76 Identities=25% Similarity=0.180 Sum_probs=48.7
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceee--cCCCCCCCCeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR--SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKI 93 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~--~~~~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~ 93 (123)
..+.+.++...|.|.|.|.|.|..|.+...+.+...-.|.... .......++++.+.|..+..+--..+.-|+|.-
T Consensus 458 ~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~g 535 (741)
T KOG3515|consen 458 GLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSG 535 (741)
T ss_pred cccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccC
Confidence 3445778999999999999999999999988754322222111 112233567766666655554444556566654
No 167
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=90.09 E-value=1.1 Score=28.29 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=25.3
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l 50 (123)
+..+|.+..+...|+|..+|..+-..=+.++.+.|
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 45689999999999999999886433333344433
No 168
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=89.99 E-value=1.1 Score=27.18 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=19.7
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPMGK 43 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (123)
+.|.+......|.+.|+|+|.|....
T Consensus 45 s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 45 SSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEcchhhCCCEEEEEEeChhcC
Confidence 45777666667778999999997544
No 169
>KOG1480|consensus
Probab=89.77 E-value=0.13 Score=44.04 Aligned_cols=31 Identities=48% Similarity=0.772 Sum_probs=27.9
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (123)
..+.|+|..+...|.|+|+|+|.|.++....
T Consensus 181 ~d~~li~~~arlsd~~nytc~a~ni~~~r~~ 211 (909)
T KOG1480|consen 181 SDHNLIISQARLSDSGNYTCEATNIVAKRKS 211 (909)
T ss_pred hcCCccccchhhhhcccceeeeehhhccccc
Confidence 3568999999999999999999999998875
No 170
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=87.50 E-value=0.82 Score=28.38 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.9
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPM 41 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~ 41 (123)
.++|.|..-...|...|+|.|.|..
T Consensus 43 ~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 43 TSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEECchhhCCCEEEEEEcCcc
Confidence 4689998888999999999999964
No 171
>PHA03042 CD47-like protein; Provisional
Probab=86.70 E-value=2.1 Score=32.52 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=25.2
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~ 52 (123)
..+|++..- ..=.|+|||.|.+..-+.+..++|..
T Consensus 70 ~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 70 TSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred ceEEEEecc-ccCCCceeEEEeecccCccEEEEEEE
Confidence 345665544 44479999999998877777777764
No 172
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=85.88 E-value=1.8 Score=28.75 Aligned_cols=32 Identities=9% Similarity=0.191 Sum_probs=24.8
Q ss_pred CCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207 7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEAT 38 (123)
Q Consensus 7 ~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~ 38 (123)
.|+++. ...+.-.|.|.+++.+|++.|.|.-+
T Consensus 61 ~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 61 DGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred CCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEee
Confidence 566554 33556689999999999999999543
No 173
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=85.74 E-value=1.2 Score=28.65 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=20.0
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGK 43 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (123)
..+|++..-...|.-+|+|+|.+.++.
T Consensus 61 ~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 61 PATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred EEEEEEecchhhCCcEEEEEEEeccCc
Confidence 457887766556666999999997654
No 174
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=83.10 E-value=6 Score=22.54 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=25.9
Q ss_pred CCeEEEEEEeCCC--CCCcceEEEeEEcCCCCCCceeeeec
Q psy17207 68 PNSYNITWMVSSY--TPLEEFKIKYRKIPGNEPSPMSNQLT 106 (123)
Q Consensus 68 ~~~~~L~w~~~s~--~pi~~y~v~yr~~~~~~~~w~~~~~~ 106 (123)
..++.|.|..... ..+..|.+.|+... ...|......
T Consensus 14 ~~~~~v~W~~~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~ 52 (93)
T cd00063 14 STSVTLSWTPPEDDGGPITGYVVEYREKG--SGDWKEVEVT 52 (93)
T ss_pred CCEEEEEECCCCCCCCcceeEEEEEeeCC--CCCCEEeecc
Confidence 5788999997543 35678999988764 4567766643
No 175
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=81.58 E-value=3.8 Score=26.15 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=25.6
Q ss_pred CeEEEEEEe-CCCCCCcceEEEeEEcCCCCCCceeee
Q psy17207 69 NSYNITWMV-SSYTPLEEFKIKYRKIPGNEPSPMSNQ 104 (123)
Q Consensus 69 ~~~~L~w~~-~s~~pi~~y~v~yr~~~~~~~~w~~~~ 104 (123)
-...|.|++ ++.++-..|+|+|+.. ....|..++
T Consensus 35 f~~iL~W~~~~~~~~~~~ytVq~~~~--~~~~W~~v~ 69 (107)
T PF01108_consen 35 FKHILRWDPGPGSPPNVTYTVQYKKY--GSSSWKDVP 69 (107)
T ss_dssp TEEEEEEEESTTSSSTEEEEEEEEES--STSCEEEEC
T ss_pred CceEEEeCCCCCCCCCeEEEEEEEec--CCcceeecc
Confidence 356799999 4556677899999943 357899884
No 176
>KOG3515|consensus
Probab=81.22 E-value=2.6 Score=36.25 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=53.7
Q ss_pred CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE---EEEeccCCCceeecCCCCCCCCeEEEEEEe-CCCCC
Q psy17207 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY---LELSGKPNPAIFRSHPQGRLPNSYNITWMV-SSYTP 82 (123)
Q Consensus 7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~---i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~-~s~~p 82 (123)
+|+.... ..+|...+..+..-+.|.|.|.|+.|..... ..+.++|.--.+...........+.+.|.. .+..|
T Consensus 51 ~~~~~~~---~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P 127 (741)
T KOG3515|consen 51 GRYATIA---DPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRP 127 (741)
T ss_pred ccccccc---CCceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCC
Confidence 4554443 4588899999999999999999997766653 222333332222222233356788899964 46677
Q ss_pred CcceEEEeEEc
Q psy17207 83 LEEFKIKYRKI 93 (123)
Q Consensus 83 i~~y~v~yr~~ 93 (123)
...|+|.+...
T Consensus 128 ~~nlrW~~n~r 138 (741)
T KOG3515|consen 128 NPNLRWGFNNR 138 (741)
T ss_pred CcceeeeeccE
Confidence 77788776543
No 177
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=81.09 E-value=1.9 Score=25.69 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=17.5
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNP 40 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (123)
....+...+.. ++.|.|.|.+.+.
T Consensus 33 ~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 33 SDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred CCceEEeeccC-CCCceEEEEeCCC
Confidence 33456666666 8899999999754
No 178
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=80.96 E-value=6.4 Score=21.63 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=28.5
Q ss_pred CCeEEEEEEeCCCCCCcceEEEeEEcCCCC-CCceeeeeccccccccceeeeeeec
Q psy17207 68 PNSYNITWMVSSYTPLEEFKIKYRKIPGNE-PSPMSNQLTGTNQYQNRRLVRKITE 122 (123)
Q Consensus 68 ~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~ 122 (123)
..++.+.|.++.......|.+.|....... ..|........ ++.+.+++|.+
T Consensus 14 ~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~L~~ 66 (83)
T smart00060 14 STSVTLSWEPPPDDGITGYIVGYRVEYREEGSSWKEVNVTPS---STSYTLTGLKP 66 (83)
T ss_pred CCEEEEEECCCCCCCCCccEEEEEEEEecCCCccEEEEecCC---ccEEEEeCcCC
Confidence 448899999543322266788776653321 24655544433 45555555543
No 179
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=80.45 E-value=2.6 Score=25.39 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=23.5
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
..+|.+-.+...=.|.|.|.+++ -..+.+++|.
T Consensus 32 ~~tlnLGs~~~DPRG~Y~C~~s~--~~~~~~LQVy 64 (69)
T cd07691 32 NTLLDLGSRINDPRGTYSCKESE--PNKEKTLQVY 64 (69)
T ss_pred ccEEeccCcccCCCcceEecCcc--CCCcEEEEEE
Confidence 34677777778889999999988 2334555554
No 180
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=80.37 E-value=2.9 Score=25.50 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=19.1
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCC
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPM 41 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~ 41 (123)
+.|.|......|...|+|+|.+..
T Consensus 46 s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 46 SSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEecchhCCCEEEEEEECcc
Confidence 456776777788899999999864
No 181
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=79.08 E-value=12 Score=22.92 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=24.1
Q ss_pred EEEEcccCCCCCeeEEEEE-EcCCceeEEEEEEe
Q psy17207 19 TLMIRKVVASDFGNYSCEA-TNPMGKHRAYLELS 51 (123)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A-~N~~G~~~~~i~l~ 51 (123)
.+........|+|...|.| .+..-..+..+.|.
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~ 77 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEIL 77 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence 5677778889999999999 66655555555443
No 182
>PHA03282 envelope glycoprotein E; Provisional
Probab=78.74 E-value=5.6 Score=32.60 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEE
Q psy17207 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEA 37 (123)
Q Consensus 6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A 37 (123)
++|.++. +.+|.|.+++.+|+|.|+-..
T Consensus 116 ~~rvs~~----n~tl~l~~a~~~DsG~Y~L~~ 143 (540)
T PHA03282 116 PPRVAVV----NGTLVLREARETDSGMYVLSV 143 (540)
T ss_pred CcceeEe----cceEEEeeccccCCceEEEEe
Confidence 5788776 357999999999999999875
No 183
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=78.54 E-value=8.4 Score=22.72 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=17.2
Q ss_pred EEEEEcccCCCCCeeEEEEEEcC
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNP 40 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~ 40 (123)
+.|.|......+...|+|++...
T Consensus 48 s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 48 SYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred EEEEEccccCCCCCEEEEEEEEc
Confidence 46777666667788999988754
No 184
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=78.26 E-value=6 Score=24.16 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=17.7
Q ss_pred EEEEEcccCCCCCeeEEEEEEcC
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNP 40 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~ 40 (123)
+.|.|..-...|...|+|++.+.
T Consensus 46 s~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 46 STLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred EEEEEEcccccCCCEEEEEEech
Confidence 46777766667788999999885
No 185
>KOG4597|consensus
Probab=77.55 E-value=2.5 Score=34.62 Aligned_cols=36 Identities=31% Similarity=0.321 Sum_probs=31.6
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
+...|.|.+-...|+|-|+|.|.|..|.-.+.+.+.
T Consensus 255 stcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~ 290 (560)
T KOG4597|consen 255 STCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCS 290 (560)
T ss_pred eeeeEEEcchhhcCCCceeeccccccceeeccceee
Confidence 456799999999999999999999999998876554
No 186
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=75.46 E-value=9.2 Score=25.27 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=17.5
Q ss_pred EEEEEcccCCCCCeeEEEEEEcC
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNP 40 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~ 40 (123)
+.|.|..-...+.+.|+|.+.+.
T Consensus 108 s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 108 SHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred EEEEecCCccCCCCEEEEEEEcC
Confidence 46777766666778999999764
No 187
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=75.39 E-value=8.2 Score=24.41 Aligned_cols=24 Identities=4% Similarity=0.111 Sum_probs=19.9
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCC
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPM 41 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~ 41 (123)
+.|.+..-...|...|+|+|.|..
T Consensus 59 S~l~~~P~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 59 SEYSLVPTPEANGKEVTCKVEHET 82 (95)
T ss_pred EEEEEecCHHHCCCEEEEEEeCcc
Confidence 578887777788889999999975
No 188
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=75.13 E-value=6.7 Score=24.95 Aligned_cols=27 Identities=7% Similarity=0.167 Sum_probs=22.2
Q ss_pred CCCeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207 67 LPNSYNITWMVSSYTPLEEFKIKYRKI 93 (123)
Q Consensus 67 ~~~~~~L~w~~~s~~pi~~y~v~yr~~ 93 (123)
.++.+.|.|.+.++|+.....|.+++.
T Consensus 15 ~G~~~~L~C~~~s~P~P~~i~W~w~~~ 41 (98)
T cd05898 15 RGERGKVKCFIGSTPPPDRIAWAWKEN 41 (98)
T ss_pred CCCcEEEEEEEccCCCCcEEEEEEccc
Confidence 678999999999998888777766654
No 189
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=70.12 E-value=5 Score=32.33 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=28.1
Q ss_pred cCCCEEEEEc------CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207 5 TTERRIMETR------GSRHTLMIRKVVASDFGNYSCEATNP 40 (123)
Q Consensus 5 ~d~R~~i~~~------~~~~~L~I~~v~~~D~G~YtC~A~N~ 40 (123)
.|+-|.|... -..++|+|.++..+..|-|+|.|.-.
T Consensus 327 ~~~~~~i~~~~~~s~dlk~STLTIkka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 327 EDDDFMISAHANYSDDLKNSTLTIKKAHINNAGCYEAQAFMG 368 (500)
T ss_pred cCCceEEEEecccccchhhceEEeeeEEEEcCCceEEEEecC
Confidence 4556666543 23678999999999999999999854
No 190
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=70.08 E-value=16 Score=22.89 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=20.2
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPM 41 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~ 41 (123)
.+.|.+......|.-.|+|++.|..
T Consensus 58 ~S~l~~~p~~~d~G~~~tC~v~h~~ 82 (95)
T cd05719 58 TSEYRLVPSREANGKELTCVVSHPT 82 (95)
T ss_pred EEEEEEecCHHHCCCEEEEEEeCcc
Confidence 3578887777788889999999875
No 191
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=64.51 E-value=8.8 Score=24.79 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=23.3
Q ss_pred CCCeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207 67 LPNSYNITWMVSSYTPLEEFKIKYRKI 93 (123)
Q Consensus 67 ~~~~~~L~w~~~s~~pi~~y~v~yr~~ 93 (123)
.+.++.|.+.+++||++.++.|.|...
T Consensus 17 ~gE~~~L~V~ieAYP~p~~~~W~~~~~ 43 (101)
T cd05860 17 AGENLDLIVEYEAYPKPEHQQWIYMNR 43 (101)
T ss_pred CCCCEEEEEEEEeCCCCeeeEEEcCCc
Confidence 477899999999999999999888654
No 192
>KOG0196|consensus
Probab=62.44 E-value=43 Score=29.70 Aligned_cols=31 Identities=16% Similarity=0.421 Sum_probs=24.4
Q ss_pred CCCCCeEEEEEEeC--CCCCCcceEEEeEEcCC
Q psy17207 65 GRLPNSYNITWMVS--SYTPLEEFKIKYRKIPG 95 (123)
Q Consensus 65 ~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~ 95 (123)
....+++.|+|..+ ....|++|.|+|..+..
T Consensus 453 ~~~~~sitlsW~~p~~png~ildYEvky~ek~~ 485 (996)
T KOG0196|consen 453 SRTSDSITLSWSEPDQPNGVILDYEVKYYEKDE 485 (996)
T ss_pred eeccCceEEecCCCCCCCCcceeEEEEEeeccc
Confidence 34688999999953 35679999999998854
No 193
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=61.89 E-value=25 Score=28.53 Aligned_cols=39 Identities=8% Similarity=0.178 Sum_probs=27.4
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCcee-EEEEEEeccCC
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKH-RAYLELSGKPN 55 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~-~~~i~l~~~P~ 55 (123)
...+.+.+++.+|.|.|.|+---.--+. ...|.|...|.
T Consensus 80 eYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmPK 119 (500)
T PHA02914 80 EYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAPK 119 (500)
T ss_pred eeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEccc
Confidence 4568889999999999999876332222 33577766664
No 194
>PHA03283 envelope glycoprotein E; Provisional
Probab=61.01 E-value=99 Score=25.90 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=29.9
Q ss_pred CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51 (123)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~ 51 (123)
...+.|.|.+.+.+++|.|+--..|..|.....+.|.
T Consensus 131 ~~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvt 167 (542)
T PHA03283 131 PERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVT 167 (542)
T ss_pred CCCCeeEEEecccccCeEEEEEecCCCceEEEEEEEE
Confidence 3467899999999999999999999877555555554
No 195
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=59.47 E-value=22 Score=21.78 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=10.1
Q ss_pred CCCCCeeEEEEEEcC
Q psy17207 26 VASDFGNYSCEATNP 40 (123)
Q Consensus 26 ~~~D~G~YtC~A~N~ 40 (123)
...|.+.|+|++...
T Consensus 68 ~~~~~~~ytC~V~H~ 82 (93)
T cd07698 68 PPEDKARYSCRVEHS 82 (93)
T ss_pred CCCCCCEEEEEEEeC
Confidence 334778888877654
No 196
>PHA03286 envelope glycoprotein E; Provisional
Probab=59.46 E-value=1e+02 Score=25.46 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=29.9
Q ss_pred CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50 (123)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l 50 (123)
+....|+|.+.+.+++|.|+--..|.-|.....+.|
T Consensus 124 ~~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vfl 159 (492)
T PHA03286 124 GRGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLV 159 (492)
T ss_pred CCCCceEEeeccccccceEEEEEcCCCCcEEEEEEE
Confidence 345789999999999999999999998887765443
No 197
>PHA03269 envelope glycoprotein C; Provisional
Probab=57.27 E-value=87 Score=26.13 Aligned_cols=84 Identities=20% Similarity=0.173 Sum_probs=43.6
Q ss_pred CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCC-c--eeEE--EEEEeccCCCceeecCCCCCCCCeEEEEEEeCC
Q psy17207 7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM-G--KHRA--YLELSGKPNPAIFRSHPQGRLPNSYNITWMVSS 79 (123)
Q Consensus 7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G--~~~~--~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s 79 (123)
++|.+-. ......|.|.++...+.|.|+=+.-+.. | ..+. ++.+...|.-.. .....-++..+.-.|.+..
T Consensus 276 ~~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV--~p~PVL~Ge~YkAtC~vA~ 353 (566)
T PHA03269 276 EKYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITV--IGDPVLLGNPYAAYCKVNK 353 (566)
T ss_pred ceEEeccCCCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccc--cCCccccCCCceEEEEeee
Confidence 5666532 1234569999999999999998754321 1 2222 333334442211 1111124566666676655
Q ss_pred C-CCCcceEEEeEE
Q psy17207 80 Y-TPLEEFKIKYRK 92 (123)
Q Consensus 80 ~-~pi~~y~v~yr~ 92 (123)
| +|-.-+.-||+.
T Consensus 354 YYPp~SvrlrWf~n 367 (566)
T PHA03269 354 YYPPHSVIVKWTSN 367 (566)
T ss_pred ecCCCceEEEEEeC
Confidence 4 333333334444
No 198
>KOG4228|consensus
Probab=50.43 E-value=28 Score=31.45 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=41.7
Q ss_pred eEEEEEEcCCceeEEEEEEeccCCCceeecC-CCCCCCCeEEEEEEeCCCCCCcceEEEeEEcCCC
Q psy17207 32 NYSCEATNPMGKHRAYLELSGKPNPAIFRSH-PQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGN 96 (123)
Q Consensus 32 ~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~-~~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~ 96 (123)
+|+|.+.-.+|.....+.+...+.|+..... .......++.+.|...+. +...|.+.++....+
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t-~~~~y~v~~~~~~s~ 65 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST-WPNYYQVIFKALSSG 65 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhccCC-ChhhhheeeeEeccC
Confidence 5999999999999988777654333322211 112245677778876555 677788888876543
No 199
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=48.97 E-value=36 Score=20.21 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=13.3
Q ss_pred EEEEEcccCCCCCeeEEEEEEcC
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNP 40 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~ 40 (123)
+.|.|. ..+...|+|.+...
T Consensus 57 s~l~v~---~~~~~~ysC~V~H~ 76 (83)
T PF07654_consen 57 SSLTVT---WNSGDEYSCRVTHE 76 (83)
T ss_dssp EEEEEE---TTTTGGEEEEEEET
T ss_pred EEEEec---CCCCCEEEEEEEEC
Confidence 356666 45556899988754
No 200
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=48.85 E-value=56 Score=19.39 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=19.3
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPMGK 43 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (123)
+.|.+..-...+...++|+|.+..-.
T Consensus 61 S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 61 STLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp EEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred EEEEEEcChHHCCeEEEEEEECCccC
Confidence 46777766666778889999987543
No 201
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=48.29 E-value=36 Score=21.36 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=12.0
Q ss_pred EEEEcccCCCCCeeEEEEEEc
Q psy17207 19 TLMIRKVVASDFGNYSCEATN 39 (123)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A~N 39 (123)
.|.+..-.-.+...|+|.+.-
T Consensus 67 ~L~v~~~~w~~~~~~sC~V~H 87 (100)
T cd07699 67 YLTLTKSDWNKHKVYTCEVTH 87 (100)
T ss_pred EEEEcHHHhCCCCeEEEEEEe
Confidence 455554444455677776654
No 202
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=47.69 E-value=63 Score=20.12 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=15.7
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCC
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPM 41 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~ 41 (123)
+.|.|..-.-.+...|+|++....
T Consensus 63 S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 63 SELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred EEEEEchHHhcCCCeEEEEEEECC
Confidence 356666544456678999887653
No 203
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=46.70 E-value=59 Score=20.94 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=18.0
Q ss_pred CCCCeEEEEEEeCCCCCCcceEEE
Q psy17207 66 RLPNSYNITWMVSSYTPLEEFKIK 89 (123)
Q Consensus 66 ~~~~~~~L~w~~~s~~pi~~y~v~ 89 (123)
..+..++|.|.+++..|.....|.
T Consensus 13 ~~G~~vtv~C~v~~v~P~~~l~v~ 36 (99)
T cd07689 13 EEGKPVTVKCEVPDVYPFDRLEIE 36 (99)
T ss_pred cCCceEEEEEEecCcccCCceEEE
Confidence 468899999999887777554443
No 204
>PHA03282 envelope glycoprotein E; Provisional
Probab=43.77 E-value=25 Score=28.98 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=23.7
Q ss_pred CCEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (123)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (123)
.+.-.|.+.|...+++|.|-|+..= -|..++
T Consensus 330 ~n~VdL~F~nAp~saSGLYVfVl~y-NGHVeA 360 (540)
T PHA03282 330 GHTVNLQLRDASEASGGLYVCVVYV-NGHVHA 360 (540)
T ss_pred CCccceEecCCCcccCceEEEEEEE-CCeeee
Confidence 3445899999999999999998872 344443
No 205
>PHA03286 envelope glycoprotein E; Provisional
Probab=43.31 E-value=31 Score=28.30 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=22.4
Q ss_pred CEEEEEcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEAT 38 (123)
Q Consensus 8 R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~ 38 (123)
+......+.. .|.+.|.+.+|+|.|-|++.
T Consensus 298 ~la~l~~~i~-nL~f~nA~~s~SGLYVfVl~ 327 (492)
T PHA03286 298 RLAFLESDIP-SFRLANAQPTDAGLYVVVAL 327 (492)
T ss_pred cceeeccCCC-ceeecCCCcccCceEEEEEE
Confidence 4444333322 49999999999999999887
No 206
>COG5475 Uncharacterized small protein [Function unknown]
Probab=42.83 E-value=63 Score=18.70 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEcccCCCCCeeEEEEEEcCCceeEEE
Q psy17207 19 TLMIRKVVASDFGNYSCEATNPMGKHRAY 47 (123)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~~ 47 (123)
..+|+..+.+ |.|.|..-|.+|.....
T Consensus 19 ~Mtvs~~ss~--Gmy~C~Wf~g~g~~~~~ 45 (60)
T COG5475 19 RMTVSGYSSD--GMYECRWFDGYGVKREA 45 (60)
T ss_pred eEEEeccccC--CeEEEEEecCCCccccc
Confidence 4567766544 99999999999855543
No 207
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=42.37 E-value=82 Score=19.63 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=7.5
Q ss_pred CCCCeeEEEEEE
Q psy17207 27 ASDFGNYSCEAT 38 (123)
Q Consensus 27 ~~D~G~YtC~A~ 38 (123)
..+...|+|.+.
T Consensus 69 ~~~~~~ysC~V~ 80 (93)
T cd05770 69 PTKGDEYACRVR 80 (93)
T ss_pred CCCCCeEEEEEE
Confidence 345666777655
No 208
>PHA03283 envelope glycoprotein E; Provisional
Probab=42.17 E-value=33 Score=28.54 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.4
Q ss_pred EEEcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207 11 METRGSRHTLMIRKVVASDFGNYSCEAT 38 (123)
Q Consensus 11 i~~~~~~~~L~I~~v~~~D~G~YtC~A~ 38 (123)
+....+...|.+.++..+++|.|-|+..
T Consensus 308 l~~~~~~v~L~f~nap~~~SGLYVfVv~ 335 (542)
T PHA03283 308 IQPAQNRVDLLFKNAPASASGLYVFVLL 335 (542)
T ss_pred ceecCCCcceEeccCCcccCceEEEEEE
Confidence 4444556789999999999999999887
No 209
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=39.35 E-value=89 Score=19.47 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=5.4
Q ss_pred CCeeEEEEEE
Q psy17207 29 DFGNYSCEAT 38 (123)
Q Consensus 29 D~G~YtC~A~ 38 (123)
+...|+|++.
T Consensus 72 ~~~~ytC~V~ 81 (94)
T cd05767 72 EGDIYSCIVE 81 (94)
T ss_pred CCCeEEEEEE
Confidence 3446666554
No 210
>PHA03273 envelope glycoprotein C; Provisional
Probab=36.94 E-value=2.4e+02 Score=23.33 Aligned_cols=26 Identities=23% Similarity=0.200 Sum_probs=20.8
Q ss_pred EEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207 18 HTLMIRKVVASDFGNYSCEATNPMGK 43 (123)
Q Consensus 18 ~~L~I~~v~~~D~G~YtC~A~N~~G~ 43 (123)
-.|+|+.+...+.|.|+=+.-+..|.
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t 223 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGT 223 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCc
Confidence 45999999999999999875555443
No 211
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=36.57 E-value=27 Score=28.32 Aligned_cols=31 Identities=19% Similarity=0.116 Sum_probs=20.9
Q ss_pred CCEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (123)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (123)
.+.-.|.+.+...+++|.|-|++.= -|..++
T Consensus 266 ~~~~~l~f~~a~~~~sGLYv~V~~~-nghv~a 296 (439)
T PF02480_consen 266 SNGVDLQFTNAPESASGLYVFVVYY-NGHVEA 296 (439)
T ss_dssp TTSSSEEESS--GGG-EEEEEEEEE-TTEEEE
T ss_pred CCCcceEecCCCcccCceEEEEEEE-CCeeee
Confidence 3445799999999999999998872 344443
No 212
>PHA03189 UL14 tegument protein; Provisional
Probab=36.32 E-value=57 Score=25.50 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=21.0
Q ss_pred CEEEEEcCCEEEEEEc-ccCCCCCeeEEEEEEcCC
Q psy17207 8 RRIMETRGSRHTLMIR-KVVASDFGNYSCEATNPM 41 (123)
Q Consensus 8 R~~i~~~~~~~~L~I~-~v~~~D~G~YtC~A~N~~ 41 (123)
++.++.-+..+.|+++ ++..+-+|.|.|+..|.-
T Consensus 122 ~W~Fedlg~aq~ltLtF~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 122 SWKFEDLGAAQRLTLTFRVSTSTAGMYECVLRNET 156 (348)
T ss_pred eeeeecccceeEEEEEEEEEecccceEEEEecccc
Confidence 4455543444444332 345677899999999973
No 213
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=30.81 E-value=16 Score=29.58 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=0.0
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA 46 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 46 (123)
.+.|.|.+++.+|+|.|+-...|.-|....
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~ 117 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQ 117 (439)
T ss_dssp ------------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEE
Confidence 467999999999999999999887766654
No 214
>KOG4258|consensus
Probab=30.38 E-value=2.3e+02 Score=25.52 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=29.0
Q ss_pred ccCCCceeecCCCCCCCCeEEEEEEeCC--CCCCcceEEEeEEcCC
Q psy17207 52 GKPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKIPG 95 (123)
Q Consensus 52 ~~P~p~~~~~~~~~~~~~~~~L~w~~~s--~~pi~~y~v~yr~~~~ 95 (123)
..|.||.... ..+.++..+.|.|.++. +.-++.|.+.+++...
T Consensus 609 ~~PspPl~~l-s~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer~~~ 653 (1025)
T KOG4258|consen 609 DIPSPPLDVL-SKSNSSSQILLKWKPPSQPNGNLTHYLVVWERQAE 653 (1025)
T ss_pred CCCCCcchhh-hccCcchheeEEecCCCCCCCceeEEEEEEEeccC
Confidence 3566665432 23335667889999875 4678999999888643
No 215
>KOG3611|consensus
Probab=29.13 E-value=34 Score=29.75 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcC
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNP 40 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~ 40 (123)
.+.|.+..++..|.|.|.|.|...
T Consensus 611 ~G~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 611 EGGLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred cCceeEEEEeeccCcccccccccC
Confidence 345889999999999999988764
No 216
>PHA03271 envelope glycoprotein C; Provisional
Probab=28.35 E-value=3.4e+02 Score=22.37 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=25.6
Q ss_pred cCCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207 5 TTERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPMG 42 (123)
Q Consensus 5 ~d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (123)
..++|.|- ..-+...|.|+++...|.|-|.-+..+.+-
T Consensus 192 ~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N 231 (490)
T PHA03271 192 HGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFN 231 (490)
T ss_pred CCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCC
Confidence 44777764 234567899999999999955444444333
No 217
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=27.63 E-value=1.4e+02 Score=18.71 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=9.9
Q ss_pred EEEEcccCCCCCeeEEEEEEc
Q psy17207 19 TLMIRKVVASDFGNYSCEATN 39 (123)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A~N 39 (123)
.|+|..-.. ...|+|.+.=
T Consensus 65 ~L~vt~~~~--~~~ysC~V~H 83 (96)
T cd07697 65 WLTVTKDSL--GKKFRCIYKH 83 (96)
T ss_pred EEEECchhC--CCeEEEEEEE
Confidence 455554322 2348887764
No 218
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=27.22 E-value=48 Score=20.07 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=11.1
Q ss_pred CCCCCeeEEEEEEcC
Q psy17207 26 VASDFGNYSCEATNP 40 (123)
Q Consensus 26 ~~~D~G~YtC~A~N~ 40 (123)
.+.-+-.|-|+|+|+
T Consensus 58 kED~stDYAcIa~~k 72 (74)
T PF05083_consen 58 KEDPSTDYACIAKNK 72 (74)
T ss_pred ccCCCcCeeeeeccC
Confidence 334467899999985
No 219
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=26.48 E-value=1e+02 Score=19.42 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=9.1
Q ss_pred EEEEcccCCCCCeeEEEEEE
Q psy17207 19 TLMIRKVVASDFGNYSCEAT 38 (123)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A~ 38 (123)
.|.|..-.-.+...|+|++.
T Consensus 69 ~L~v~~~~w~~~~~ytC~V~ 88 (102)
T cd05768 69 KLTVSAEDWNAGDVFTCVVG 88 (102)
T ss_pred EEEEcHHHhcCCCcEEEEeE
Confidence 34443332234445666554
No 220
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=26.13 E-value=1.2e+02 Score=18.79 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=10.6
Q ss_pred EEEEcccCCCCCeeEEEEEEc
Q psy17207 19 TLMIRKVVASDFGNYSCEATN 39 (123)
Q Consensus 19 ~L~I~~v~~~D~G~YtC~A~N 39 (123)
.|+|..-.-.....|+|++.-
T Consensus 65 ~L~v~~~~w~~~~~ytC~V~H 85 (95)
T cd04985 65 QLTVPASEWKGKESFYCKVEH 85 (95)
T ss_pred EEEEeHHHcCCCCcEEEEEEe
Confidence 455544322224467776664
No 221
>PHA03240 envelope glycoprotein M; Provisional
Probab=25.67 E-value=29 Score=25.71 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=24.4
Q ss_pred CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee
Q psy17207 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH 44 (123)
Q Consensus 7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~ 44 (123)
.|+..+. ..++|.|-.+..+|.|+|.=...-..|..
T Consensus 96 t~i~y~C--~NstL~i~~vn~sd~~nYcr~k~~~~g~~ 131 (258)
T PHA03240 96 SFILYEC--HNSTLIIAHLNLSDAGEYCRKKCPPKGDC 131 (258)
T ss_pred CceEEEe--ccceEEEEEEeecCcchhhhccCCCCCCc
Confidence 3444443 46899999999999999943333335554
No 222
>PHA03270 envelope glycoprotein C; Provisional
Probab=25.53 E-value=3.8e+02 Score=22.06 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=21.7
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMG 42 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G 42 (123)
...|.|+.+.....|.|+=..-+..+
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~ 206 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADR 206 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCC
Confidence 34699999999999999998666555
No 223
>PHA03281 envelope glycoprotein E; Provisional
Probab=25.28 E-value=74 Score=26.88 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=20.7
Q ss_pred CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207 15 GSRHTLMIRKVVASDFGNYSCEAT 38 (123)
Q Consensus 15 ~~~~~L~I~~v~~~D~G~YtC~A~ 38 (123)
.+.-.|.+.+...+++|.|-|++.
T Consensus 472 ~n~vdL~F~nApasaSGLYVfVl~ 495 (642)
T PHA03281 472 DGGSALKFVDAAESLSGLYVFIIH 495 (642)
T ss_pred CCCcceEeccCCcccCceEEEEEE
Confidence 344569999999999999999887
No 224
>KOG0200|consensus
Probab=25.27 E-value=53 Score=27.55 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.5
Q ss_pred CEEEEEEcccCCCCCeeEEEEEEc
Q psy17207 16 SRHTLMIRKVVASDFGNYSCEATN 39 (123)
Q Consensus 16 ~~~~L~I~~v~~~D~G~YtC~A~N 39 (123)
....+.+..+...|.|.|+|.+.|
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec
Confidence 345789999999999999999999
No 225
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=25.21 E-value=1.4e+02 Score=18.61 Aligned_cols=8 Identities=25% Similarity=0.883 Sum_probs=4.2
Q ss_pred eeEEEEEE
Q psy17207 31 GNYSCEAT 38 (123)
Q Consensus 31 G~YtC~A~ 38 (123)
-.|+|.+.
T Consensus 76 ~~ysC~V~ 83 (96)
T cd07696 76 DTFQCKVT 83 (96)
T ss_pred CcEEEEEE
Confidence 35666554
No 226
>KOG4367|consensus
Probab=24.68 E-value=1.5e+02 Score=24.59 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=27.6
Q ss_pred cCCCceeecCCCCCCCCeEEEEEE-e-CCCCCCcceEEEeEEc
Q psy17207 53 KPNPAIFRSHPQGRLPNSYNITWM-V-SSYTPLEEFKIKYRKI 93 (123)
Q Consensus 53 ~P~p~~~~~~~~~~~~~~~~L~w~-~-~s~~pi~~y~v~yr~~ 93 (123)
.|..|++....-....++++|.|+ + -+..|...|.++...-
T Consensus 437 vpatpilq~~ec~t~nns~t~~wkqp~~~~~~~dg~~leld~g 479 (699)
T KOG4367|consen 437 VPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDG 479 (699)
T ss_pred CCCCceeehhhhhccCCceEEEeecCCCCCCCCcceEEEeecC
Confidence 344455443333446789999999 3 3678999999987653
No 227
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=21.74 E-value=1.8e+02 Score=18.56 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=12.6
Q ss_pred CCCeeEEEEEE-cCCceeEEE
Q psy17207 28 SDFGNYSCEAT-NPMGKHRAY 47 (123)
Q Consensus 28 ~D~G~YtC~A~-N~~G~~~~~ 47 (123)
.-.|.|.|..+ |.-+....+
T Consensus 73 ~~~GayyCegk~r~~~~rI~T 93 (96)
T PF10430_consen 73 EAIGAYYCEGKVRDEVTRIHT 93 (96)
T ss_dssp S--EEEEEEEEETTEEEEEEE
T ss_pred cccceEEEEEEecCceEEEEE
Confidence 44699999988 665554443
No 228
>PHA03281 envelope glycoprotein E; Provisional
Probab=20.28 E-value=5e+02 Score=22.19 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=26.5
Q ss_pred EEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEEe
Q psy17207 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS 51 (123)
Q Consensus 17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l~ 51 (123)
.+.|+|.+.+.+++|.|+--....-|...- .+.|.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVt 332 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVK 332 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEE
Confidence 458999999999999999888866664443 44443
Done!