RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17207
(123 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 58.3 bits (141), Expect = 3e-11
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAIFR 60
L+ + TL I + S G Y+C A+NP+G A L LS P F
Sbjct: 142 LKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFD 201
Query: 61 SHPQ 64
P
Sbjct: 202 LKPV 205
Score = 54.8 bits (132), Expect = 3e-10
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAIF 59
+L + M+ + + +L+I KV SD G Y+C+A N +G A L + + P F
Sbjct: 45 KLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSF 104
Query: 60 RSHPQ 64
+
Sbjct: 105 ARKLK 109
Score = 51.7 bits (124), Expect = 5e-09
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFR 60
L + ++ + + ++ I V ++D G Y C+A+N +G + L P F
Sbjct: 425 LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPP---RFV 481
Query: 61 SHPQ 64
Sbjct: 482 KKLS 485
Score = 51.7 bits (124), Expect = 5e-09
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIF 59
+ M + TL + KV D G Y+C A+N GK A L + P F
Sbjct: 237 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPR---F 293
Query: 60 RSHPQ 64
+
Sbjct: 294 IKKLE 298
Score = 49.8 bits (119), Expect = 2e-08
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ ++ + + TL + ++ G Y+C+ N G + LS
Sbjct: 519 VRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567
Score = 48.6 bits (116), Expect = 6e-08
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAIFR 60
++ + + M S L + + D G+Y+CEA N G L++ P +FR
Sbjct: 332 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP---VFR 388
Query: 61 SHPQ 64
P
Sbjct: 389 KKPH 392
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 56.8 bits (137), Expect = 4e-11
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 5/124 (4%)
Query: 4 ETTERRI-METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
+ I + S L + +DFGNY+C A N +G+ L P+
Sbjct: 61 SSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID 120
Query: 63 PQGRLPNSYNITWMVSSYT---PLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRK 119
++ + + T P+ ++K ++R G E + +
Sbjct: 121 QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRA-VGEEVWHSKWYDAKEASMEGIVTIVG 179
Query: 120 ITEN 123
+
Sbjct: 180 LKPE 183
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 55.2 bits (133), Expect = 1e-10
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAI 58
++ +T+R +++ G R L I D G Y C+AT+ G+ LE+ K
Sbjct: 42 KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKL---T 98
Query: 59 FRSHPQ 64
FR
Sbjct: 99 FREVVS 104
Score = 40.9 bits (96), Expect = 2e-05
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
+ L I + SD G Y CE + ++
Sbjct: 151 NNLQILNINKSDEGIYRCEGRVEARGEIDFRDI 183
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 54.9 bits (132), Expect = 2e-10
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
+ ++R G + L I + +D G Y E + H+ ++LSG+ +
Sbjct: 43 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 102
Query: 62 HPQGRLP 68
+ +
Sbjct: 103 FQRLKQA 109
Score = 46.8 bits (111), Expect = 2e-07
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 3 LETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L T+ + G I V +D G Y N G + +S
Sbjct: 158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 53.1 bits (128), Expect = 2e-10
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNP 56
++ +E +E + L I G Y+ N +G +A + L+ KP+P
Sbjct: 48 IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 103
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 54.7 bits (132), Expect = 2e-10
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
+ R L I V ++ G YS +ATN G+ A L + + P F Q
Sbjct: 53 GVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ 111
Score = 49.7 bits (119), Expect = 1e-08
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
++++ + G ++L+I + D G YS ATN +G+ A L
Sbjct: 144 IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 55.3 bits (133), Expect = 2e-10
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
+ ++R G + L I + +D G Y E + H+ ++LSG+ +
Sbjct: 148 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 207
Query: 62 HPQGRLP 68
+ +
Sbjct: 208 FQRLKQA 214
Score = 47.6 bits (113), Expect = 1e-07
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 1 MRLETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L + + + G I V +D G Y N G + +S
Sbjct: 261 KALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312
Score = 47.2 bits (112), Expect = 2e-07
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
+ E+ + TL+I + D G Y + GK ++ L+L + +
Sbjct: 48 ISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMM 103
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 53.5 bits (129), Expect = 5e-10
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
L + + M + G HTL + D G Y+C ATN +G+ + L L P
Sbjct: 48 LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATP 101
Score = 47.4 bits (113), Expect = 9e-08
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRAYLELS 51
L+ +E +E L+++ V + G Y + +N G A L++
Sbjct: 143 LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 51.6 bits (124), Expect = 5e-10
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA 57
+ ++ R +G ++ L++R+ SD G K A L + + P+
Sbjct: 50 VGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSK--ASLIVRERSGPS 102
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 50.8 bits (122), Expect = 1e-09
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
+++ + S ++ +D GNY + N +G+ A E+
Sbjct: 43 AALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 50.8 bits (122), Expect = 1e-09
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
+ +++ H+L+I V + D G Y+C ATN G+ L ++ K +
Sbjct: 52 PDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 53.1 bits (127), Expect = 1e-09
Identities = 15/66 (22%), Positives = 29/66 (43%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
E + R +E++G++ + + + D G YSC+ T+ G +YL + + SH
Sbjct: 43 TEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSH 102
Query: 63 PQGRLP 68
Sbjct: 103 EHKFPT 108
Score = 49.6 bits (118), Expect = 2e-08
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK 53
+ E+ + TL+I + D G Y + GK ++ L+L +
Sbjct: 263 ISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311
Score = 46.1 bits (109), Expect = 4e-07
Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 3 LETTERRIMETRGS--RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
+ + M + + + K+ D G Y+ + + + + + L G + +
Sbjct: 149 IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQK 208
Query: 61 SHPQGRLP 68
R
Sbjct: 209 EAEFQRQE 216
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 52.6 bits (126), Expect = 2e-09
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPN--PAIFRSHPQ 64
+ R +L++ VV SD GNY+C N G H +L++ + P + P
Sbjct: 67 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPA 126
Score = 43.3 bits (102), Expect = 3e-06
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
L + V +D G Y C+ +N +G+ A+L + K
Sbjct: 185 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 52.5 bits (126), Expect = 2e-09
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAI 58
++ +T+R +++ G R L I D G Y C+AT+ G+ LE+ K
Sbjct: 44 KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKL---T 100
Query: 59 FRSHPQ 64
FR
Sbjct: 101 FREVVS 106
Score = 50.2 bits (120), Expect = 2e-08
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIF 59
+E E+ I++ GS L +R ++ SD G Y C ATN G+ +A+L++ + +
Sbjct: 234 LIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH---H 288
Query: 60 RSH 62
H
Sbjct: 289 HHH 291
Score = 37.1 bits (86), Expect = 5e-04
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMG 42
+ + L I + SD G Y CE
Sbjct: 151 ANNNLQILNINKSDEGIYRCEGRVEAR 177
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 50.5 bits (121), Expect = 2e-09
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPN 55
+ + R TL+I+ V D G Y+ A N G L+++ +PN
Sbjct: 63 ISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 50.6 bits (121), Expect = 2e-09
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 3 LETTERRIMETRGSRH----TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
L ++ +E L+ K + GNY+ A NP+G +P P
Sbjct: 46 LRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP 105
Query: 57 A 57
Sbjct: 106 V 106
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 50.1 bits (120), Expect = 2e-09
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
L +ER G+ H L++ + +D G Y C A N G+ A + + P
Sbjct: 54 LAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 52.1 bits (125), Expect = 3e-09
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 16/116 (13%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAIFRS 61
+ T + G + L I +DFG Y+C ATN +G L L+ P+
Sbjct: 144 KNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSS----- 198
Query: 62 HPQG-----RLPNSYNITWMVSSYT---PLEEFKIKYRKIPGNEPSPMSNQLTGTN 109
P G + +++ P+ +++ +++ + + T
Sbjct: 199 -PYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTM 253
Score = 46.0 bits (109), Expect = 5e-07
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
R ++ + +L I+ V SD G Y CEA + +G H+ + L + F S
Sbjct: 47 DKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-YAPKFIS 105
Query: 62 HPQ 64
+
Sbjct: 106 NQT 108
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 49.7 bits (119), Expect = 3e-09
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
L T+ R + T + T I V ASD GNYS N GK A L
Sbjct: 55 LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 51.7 bits (124), Expect = 4e-09
Identities = 10/50 (20%), Positives = 25/50 (50%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L + ++ + + ++ I V ++D G Y C+A+N +G + ++
Sbjct: 232 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281
Score = 50.1 bits (120), Expect = 1e-08
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
+ M + TL + KV D G Y+C A+N GK A L + P
Sbjct: 46 IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 99
Score = 49.7 bits (119), Expect = 2e-08
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
++ + + M S L + + D G+Y+CEA N G + L K P +FR
Sbjct: 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-PPVFRKK 198
Query: 63 PQ 64
P
Sbjct: 199 PH 200
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 48.9 bits (117), Expect = 6e-09
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE 49
+ ++R + G H L+I V D G+Y+ A L
Sbjct: 47 EVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLN 94
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 48.8 bits (117), Expect = 6e-09
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGK 53
R E G L I D G Y+C+A N G A LE+ G+
Sbjct: 48 PDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 49.0 bits (117), Expect = 6e-09
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 3 LETTERRIMETRGSRH-----TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA 57
L ++ + + H L + + G+Y+ A N GK + P
Sbjct: 42 LNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
Query: 58 I 58
I
Sbjct: 102 I 102
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 48.5 bits (116), Expect = 8e-09
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 4 ETTERRI-METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ R +E TL+I V D G Y+ N G A + +
Sbjct: 48 SQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 50.9 bits (122), Expect = 9e-09
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 16/104 (15%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRS 61
+++ TR + V D G Y A N G L+++ P+P
Sbjct: 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDP----- 201
Query: 62 HPQG-----RLPNSYNITWMVSSYT---PLEEFKIKYRKIPGNE 97
P+G +S N+TW + + + ++
Sbjct: 202 -PRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAER 244
Score = 47.1 bits (112), Expect = 2e-07
Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLP 68
RI E +G H L+I V D Y ATN G L + PA
Sbjct: 53 RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE-VPAKIHLPKTLEGM 111
Query: 69 NSY 71
+
Sbjct: 112 GAV 114
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 48.2 bits (115), Expect = 1e-08
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
L ++ + +E G L++++ ++ G YSCEA L+++G+
Sbjct: 51 LSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLS--FRLQVAGQC 100
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 49.8 bits (119), Expect = 1e-08
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
R ++ + +L I+ V SD G Y CEA + +G H+ + L
Sbjct: 147 RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 190
Score = 47.9 bits (114), Expect = 6e-08
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
+E E+ I++ GS L +R ++ SD G Y C ATN G+ +A+L++ +P
Sbjct: 45 IEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQP 96
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 49.9 bits (119), Expect = 1e-08
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPN--PAIFRSHPQ 64
++ R + +L++ VV SD GNY+C N G + L++ + P + P
Sbjct: 63 GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPA 122
Score = 43.8 bits (103), Expect = 2e-06
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
+ + I E+ + L + V D G Y C ATN +G +L + G
Sbjct: 166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA 222
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 47.7 bits (114), Expect = 1e-08
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
LE +E+ + L ++ + D G Y C+ N G+ +Y EL
Sbjct: 43 LENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 49.3 bits (118), Expect = 2e-08
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAI--F 59
+ + RI E +G H L+I V D Y ATN G A LE+ +
Sbjct: 48 DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKT 107
Query: 60 RSHPQ 64
Sbjct: 108 LEGMG 112
Score = 45.9 bits (109), Expect = 3e-07
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 2 RLETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
++ +++ TR + V D G Y A N G + +EL
Sbjct: 144 LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 47.7 bits (114), Expect = 2e-08
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
L+ + + TL I D G Y TN G+
Sbjct: 49 LQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGE 89
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 47.7 bits (114), Expect = 2e-08
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
+ +++ + G+ L+IR D G Y+CE A L + K +
Sbjct: 48 IRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKST--ASLHVEEKASG 99
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 47.3 bits (113), Expect = 2e-08
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
+ + + + T G+RHTL +R+V +D G+Y+ A +
Sbjct: 48 ISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGS 84
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 47.3 bits (113), Expect = 2e-08
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
L +++ L IR+V D G Y+C+A + +G A+ + G
Sbjct: 49 ETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 47.4 bits (113), Expect = 2e-08
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
+ + +++ + L++ V D G Y CE + + ++ P I S
Sbjct: 53 VVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESA--SFTVTVTEPP-VRIIYSG 109
Query: 63 P 63
P
Sbjct: 110 P 110
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 46.9 bits (112), Expect = 3e-08
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
L + + G +H L++ G S +A N
Sbjct: 44 PLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN 81
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 46.9 bits (112), Expect = 3e-08
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPN 55
++ ++R + +G H L+I + D G+Y A + + P+
Sbjct: 46 VQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVISGPS 98
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 46.9 bits (112), Expect = 3e-08
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+++ + H+L+ V ASD G Y+C A N G+ ++L
Sbjct: 48 SDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 47.0 bits (112), Expect = 3e-08
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
I +L D GNY+ A NP G+ L + +
Sbjct: 56 YTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 47.0 bits (112), Expect = 4e-08
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
+E +E +++ G +H L++ + D G + C
Sbjct: 50 VEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEG 86
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 48.8 bits (116), Expect = 4e-08
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPN--PAIFRSHPQ 64
++ R + +L++ VV SD GNY+C N G + L++ + P + P
Sbjct: 171 GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPA 230
Score = 40.8 bits (95), Expect = 3e-05
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY 47
L +ER ++ L + D G YSC +
Sbjct: 49 GLVPSERVLV----GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHF 90
Score = 40.4 bits (94), Expect = 4e-05
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 13 TRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
T L + V D G Y+C A N +G H A+L
Sbjct: 286 TDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 46.5 bits (111), Expect = 4e-08
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
+ + + L I K SD G Y+C N G
Sbjct: 47 ITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGS 87
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 46.5 bits (111), Expect = 5e-08
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 1 MRLETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGK 53
+++E ++R + L+IR V D + +A N G+ A+L + K
Sbjct: 44 VKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 47.9 bits (114), Expect = 6e-08
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 2 RLETTERRIM--ETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNP 56
+L ++RI TL I D G Y C T G +++ K
Sbjct: 44 KLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL-- 101
Query: 57 AIFRSHPQ 64
+F++ P
Sbjct: 102 -MFKNAPT 108
Score = 42.1 bits (99), Expect = 8e-06
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ L IR + +D G Y CE + ++
Sbjct: 155 NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 45.9 bits (109), Expect = 7e-08
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
+ R +L++ VV SD GNY+C N G H +L+
Sbjct: 55 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric
four-helix bundle cytokine, receptor tyrosine kinase
glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 48.0 bits (114), Expect = 7e-08
Identities = 10/63 (15%), Positives = 16/63 (25%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
+ + + GS L + G Y C A + L K +
Sbjct: 35 DGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNV 94
Query: 62 HPQ 64
Q
Sbjct: 95 LAQ 97
Score = 46.5 bits (110), Expect = 3e-07
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 2 RLETTERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIF 59
+L ++ TL + +V GNYSC A+N GKH + +
Sbjct: 227 KLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGN- 285
Query: 60 RSHPQ 64
H
Sbjct: 286 SHHHH 290
Score = 35.3 bits (81), Expect = 0.002
Identities = 9/53 (16%), Positives = 13/53 (24%), Gaps = 4/53 (7%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPN-PAIFRSHPQ 64
H I + +Y C A K L++ P P
Sbjct: 142 PWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPA 194
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 45.8 bits (109), Expect = 8e-08
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA 57
+L + R TR + + ++ V +D G Y+C ++P G Y ++
Sbjct: 42 QLAESNR----TRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 48.4 bits (115), Expect = 8e-08
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
S L I V D G Y C N A L+L G+ +P + R Q
Sbjct: 387 SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQ 437
Score = 44.2 bits (104), Expect = 2e-06
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 2 RLETTERRIMETRGSRH-----TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
++ +R + + + L I V A+D G Y C A + +G H A L + G P
Sbjct: 469 KIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP 528
Score = 41.8 bits (98), Expect = 1e-05
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 3 LETTERRIMETRGSRH--TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
+ ++ R + TL+I+ V D G Y C N +G L+ P +
Sbjct: 289 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-PLSAK 347
Query: 61 SHPQ 64
P
Sbjct: 348 IDPP 351
Score = 41.5 bits (97), Expect = 2e-05
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
L I V AS GN++C A N G L + P + P
Sbjct: 678 VLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPP---RWILEPT 722
Score = 40.7 bits (95), Expect = 4e-05
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
I G TL + + ++ G Y CEA N +G
Sbjct: 763 KKSDNIRVEEG---TLHVDNIQKTNEGYYLCEAINGIGS 798
Score = 39.1 bits (91), Expect = 1e-04
Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 14/113 (12%)
Query: 3 LETTERRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMG---KHRAYLELSGKPNPAI 58
L ++ + G TL+I V SD Y+C A N G + +++ P
Sbjct: 567 LPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIP 623
Query: 59 FRSHPQGRLPN-SYNITWMVSSY-TPLEEFKIKYRKIPGNEPSPMSNQLTGTN 109
F + V PL I + + +T +
Sbjct: 624 FAFEEGPAQVGQYLTLHCSVPGGDLPLN---IDWTL--DGQAISEDLGITTSR 671
Score = 36.8 bits (85), Expect = 9e-04
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 14/125 (11%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASD-FGNYSCEATNPMG---KHRAYLELSGKPNPAIF 59
E + ++ G L IR+V D + +Y C + + + A P
Sbjct: 188 EYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS 244
Query: 60 RSHPQGRLPNSYNITWMVSSYTPLE-------EFKIKYRKIPGNEPSPMSNQLTGTNQYQ 112
L T+ SS L ++ K + L +
Sbjct: 245 AVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQV 304
Query: 113 NRRLV 117
+ L+
Sbjct: 305 SGTLI 309
Score = 34.5 bits (79), Expect = 0.005
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 27/97 (27%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDF------GNYSCEATNPMGK---HRAYLELSGKP 54
+ R + + G L+ A D+ Y+C A N G ++
Sbjct: 83 DVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQ 139
Query: 55 --------------NPAIFRSHPQGRLPN-SYNITWM 76
N A+ + + + ++W
Sbjct: 140 YYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH 176
Score = 33.0 bits (75), Expect = 0.018
Identities = 5/49 (10%), Positives = 11/49 (22%), Gaps = 1/49 (2%)
Query: 20 LMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA-IFRSHPQGRL 67
+ + ++ A G +F P R+
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRI 49
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 45.8 bits (109), Expect = 9e-08
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
L R ++ G+R L I + +D G YSC + A L + P S
Sbjct: 47 LRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ--ERTSATLTVRALPARFTEGSG 104
Query: 63 PQ 64
P
Sbjct: 105 PS 106
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 45.8 bits (109), Expect = 1e-07
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 3 LETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIF-R 60
L E I G H L +R++ D G EA G RA L P++F R
Sbjct: 54 LHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSR 109
Query: 61 SHPQ 64
S P
Sbjct: 110 SGPS 113
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 47.0 bits (112), Expect = 1e-07
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG---KHRAYLELSGKPNPAIF 59
++ + R R + L I V SD G Y C A N +G + L++ KP
Sbjct: 48 IKLFDTRY-SIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPK---I 103
Query: 60 RSHPQ 64
P
Sbjct: 104 TRPPI 108
Score = 46.6 bits (111), Expect = 2e-07
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLE 49
L R + G +L I V D G Y C A N +G LE
Sbjct: 141 LRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLE 187
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 45.4 bits (108), Expect = 1e-07
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
+ + I E+ G++ TL I + +D Y C
Sbjct: 58 MSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG 93
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 47.7 bits (113), Expect = 1e-07
Identities = 12/109 (11%), Positives = 29/109 (26%), Gaps = 14/109 (12%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
L ++ RG +++I K+ + G Y + + +S +
Sbjct: 88 SLNCQPHFDLQNRGV-VSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLR 146
Query: 62 HPQGRLPNS-------------YNITWMVSSYTPLEEFKIKYRKIPGNE 97
P R + + W++ + + E
Sbjct: 147 RPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE 195
Score = 42.7 bits (100), Expect = 7e-06
Identities = 5/41 (12%), Positives = 11/41 (26%), Gaps = 2/41 (4%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
+ +++ G Y A N + L +
Sbjct: 376 NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416
Score = 39.3 bits (91), Expect = 1e-04
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 3 LETTERRIMETRGSRH------TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
LE M T + + V +D G Y+C ++ + A + + K
Sbjct: 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS-ALVTIVEKG 325
Score = 29.3 bits (65), Expect = 0.31
Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
+ ++ ++ +D C A N +G+ L
Sbjct: 192 KKEEKVLHELFGTD---IRCCARNELGRECTRLFTIDLNQTPQTTLPQL 237
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 47.2 bits (112), Expect = 1e-07
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK 53
+ E+ + TL+I + D G Y + GK ++ L+L +
Sbjct: 158 ISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206
Score = 44.5 bits (105), Expect = 1e-06
Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 3 LETTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
+ + M + + K+ D G Y+ + + + + + L G + +
Sbjct: 44 IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQK 103
Query: 61 SHPQGRLP 68
R
Sbjct: 104 EAEFQRQE 111
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 45.8 bits (109), Expect = 1e-07
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
T R + T +R+ SD G Y K A + +
Sbjct: 66 DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 46.7 bits (111), Expect = 1e-07
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+E E+ I++ GS L +R ++ SD G Y C ATN G+ L
Sbjct: 139 IEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185
Score = 38.6 bits (90), Expect = 1e-04
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMG 42
+ L I + SD G Y CE
Sbjct: 57 NNLQILNINKSDEGIYRCEGRVEAR 81
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 45.4 bits (107), Expect = 1e-07
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
L+ + ++ L I + G+Y CE + + L
Sbjct: 56 HLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 47.4 bits (112), Expect = 2e-07
Identities = 6/58 (10%), Positives = 16/58 (27%)
Query: 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP 63
+ +++I K+ + G Y + + +S + P
Sbjct: 91 CQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP 148
Score = 42.0 bits (98), Expect = 1e-05
Identities = 10/77 (12%), Positives = 16/77 (20%), Gaps = 21/77 (27%)
Query: 17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL---------------------SGKPN 55
+++ G Y A N + L G P
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPL 436
Query: 56 PAIFRSHPQGRLPNSYN 72
P+ + PN
Sbjct: 437 PSWTWKKCSDKSPNCTE 453
Score = 37.8 bits (87), Expect = 3e-04
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
+ V +D G Y+C ++ + A + + K
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQ-SALVTIVEKG 325
Score = 33.9 bits (77), Expect = 0.009
Identities = 9/47 (19%), Positives = 12/47 (25%), Gaps = 3/47 (6%)
Query: 20 LMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
+ A C A N +G L G P I +
Sbjct: 476 STLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF-PFIQDGGTK 521
Score = 28.1 bits (62), Expect = 0.86
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 28 SDFGNYSCEATNPMGK---HRAYLELSGKP 54
+ C A N +G+ ++L+ P
Sbjct: 201 LFGTDIRCCARNELGRECTRLFTIDLNQTP 230
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 45.1 bits (107), Expect = 2e-07
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
+ + + I E +G + L I +D Y A +
Sbjct: 48 IRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGD 84
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 46.9 bits (111), Expect = 2e-07
Identities = 12/62 (19%), Positives = 19/62 (30%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
+ + L + V D G YSC A+N +G A + +
Sbjct: 228 LEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHHH 287
Query: 61 SH 62
H
Sbjct: 288 HH 289
Score = 45.7 bits (108), Expect = 5e-07
Identities = 9/63 (14%), Positives = 15/63 (23%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
+ ++ TL R + G Y C + L K +
Sbjct: 35 DGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNL 94
Query: 62 HPQ 64
Q
Sbjct: 95 LAQ 97
Score = 34.9 bits (80), Expect = 0.003
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATN 39
+IRK D Y C+
Sbjct: 142 PWRGFIIRKAKVLDSNTYVCKTMV 165
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 46.5 bits (110), Expect = 2e-07
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 3 LETTERRIMETRGSRH-------TLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ T + S + L+ + ASD G YSCEA N G +
Sbjct: 149 MPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
Score = 40.7 bits (95), Expect = 2e-05
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
+ + V D G Y+C + G ++L P +
Sbjct: 68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV-PPSKPTVNI 115
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 46.2 bits (109), Expect = 2e-07
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 5 TTERRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMGKHRAYLEL 50
+ R + + R L I + + +D G Y C T+ G +A + L
Sbjct: 133 SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179
Score = 40.8 bits (95), Expect = 2e-05
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
+ E + +G YSC A ++L G P ++
Sbjct: 39 VVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMG-TANIQLHGPP---RVKAVKS 91
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 45.6 bits (108), Expect = 2e-07
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
+I +L I +V D Y+C+A N +G+
Sbjct: 89 QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 46.7 bits (111), Expect = 2e-07
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFRS 61
+ RI + R L I +D G Y C ATN G A L + + F
Sbjct: 153 ASNGRIKQLRS--GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSI 210
Query: 62 HPQ 64
P
Sbjct: 211 LPM 213
Score = 41.3 bits (97), Expect = 2e-05
Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 7 ERRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMGK--HRAYL----ELSGKPNPAIF 59
I + L I+ + D Y C A N +G+ A L E
Sbjct: 52 FETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNI 111
Query: 60 RSHPQ 64
PQ
Sbjct: 112 DMGPQ 116
Score = 40.2 bits (94), Expect = 5e-05
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAI 58
++ D NY+C A + +G A + + P
Sbjct: 255 GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGT 297
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 46.4 bits (110), Expect = 2e-07
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 2 RLETTERRIMETR-GSRHTLMIRKV-VASDFGNYSCEATNPMGKHRAYLELS------GK 53
++ ++E GS L I+ + D Y C A+N +G+ L+
Sbjct: 46 KVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIP 105
Query: 54 PNPAIFRSHPQ 64
PQ
Sbjct: 106 RGFPTIDMGPQ 116
Score = 45.6 bits (108), Expect = 5e-07
Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKP 54
R S L I + SD G Y C ATN G A L + G
Sbjct: 153 NNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 45.5 bits (107), Expect = 3e-07
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
ET R +ET R + D G Y+ NP+G+ + L +
Sbjct: 88 CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 46.6 bits (110), Expect = 3e-07
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L+IR V C TN +G +A L +
Sbjct: 268 AQLLIRPVDKPINTTLICNVTNALGARQAELTVQ 301
Score = 32.0 bits (72), Expect = 0.028
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 18 HTLMIRKVVASDFGNYSCEA-TNPMGKHRAYLELS 51
+L + + D GNY+C T P G + L
Sbjct: 79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR 113
Score = 30.1 bits (67), Expect = 0.16
Identities = 5/46 (10%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 2 RLETTERRIMETRG---SRHTLMIRKVVASDFGNYSCEATNPMGKH 44
+ T + G ++ D N +C+ + +
Sbjct: 158 GMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEK 203
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 46.2 bits (109), Expect = 3e-07
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
+ + L++ S GNY C + LS P H +
Sbjct: 60 IHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHSE 112
Score = 36.5 bits (84), Expect = 8e-04
Identities = 5/42 (11%), Positives = 10/42 (23%)
Query: 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
+ E GS + + +C N +
Sbjct: 151 ANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 46.4 bits (110), Expect = 3e-07
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 2 RLETTERRIM--ETRGSRHTLMIRKVVASDFGNYSCEATNPMG-KHRAYLELSGKPNPAI 58
+L ++RI TL I D G Y C T G + A + + +
Sbjct: 44 KLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL-M 102
Query: 59 FRSHPQ 64
F++ P
Sbjct: 103 FKNAPT 108
Score = 43.7 bits (103), Expect = 2e-06
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
E E+ I S L IR V +D Y C A N G+ A + L
Sbjct: 242 EDDEKHIFSDDSS--ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287
Score = 39.1 bits (91), Expect = 1e-04
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGK----HRAYLELSGKPNPAIFRS 61
S + L IR + +D G Y CE + ++ P +S
Sbjct: 153 SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQS 202
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 45.6 bits (108), Expect = 3e-07
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIFRSHPQ 64
+ + L ++ V SD G Y C+ + +L + G P F P+
Sbjct: 50 YIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPF---FTVEPK 106
Score = 35.5 bits (82), Expect = 0.002
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGK 43
+ ++ + +SCEA N G
Sbjct: 144 APSPSVLNVTGVTQSTMFSCEAHNLKGL 171
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 43.9 bits (104), Expect = 4e-07
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELS 51
L++ ++ D G YSC AT+ + + +S
Sbjct: 54 PPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 46.3 bits (109), Expect = 4e-07
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
+R + S G Y CEATNP+G +E++ A+ H
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALEHHHHH 330
Score = 36.7 bits (84), Expect = 9e-04
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 3 LETTERRIMETRGSRH--TLMIRKVVASDFGNYSCEA-TNPMGKHRAYLELSGKPNPAIF 59
L R+ R S T+ + ++ D G Y CE T P G + L L+ P +
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134
Query: 60 RSHPQ 64
Q
Sbjct: 135 IEGTQ 139
Score = 30.9 bits (69), Expect = 0.082
Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 4/53 (7%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
E T S + + + +C M + L + +P
Sbjct: 182 EIRNPNGTVTVIS--RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEP 232
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 44.2 bits (105), Expect = 4e-07
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
L + + G L I + +D Y+C+ + RA L + G+
Sbjct: 48 LRASGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQ--AQSRAQLLVQGRR 97
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 43.9 bits (104), Expect = 5e-07
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
L I+ + D G Y+C A N +G+ A++
Sbjct: 57 STCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 45.8 bits (108), Expect = 5e-07
Identities = 10/62 (16%), Positives = 14/62 (22%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
L + + D G Y C N + +EL N F
Sbjct: 65 ARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLP 124
Query: 62 HP 63
Sbjct: 125 FI 126
Score = 40.8 bits (95), Expect = 3e-05
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L+ + + RG+ L++ V D G Y C T + + S
Sbjct: 166 LDKDNEKFLSVRGT-THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRS 213
Score = 40.4 bits (94), Expect = 3e-05
Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 4/53 (7%)
Query: 2 RLETTERRIMETRG---SRHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLEL 50
R+ R+ L+ V D ++ C N + +
Sbjct: 279 RVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 45.3 bits (107), Expect = 5e-07
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL---------SGK 53
+ +RR + L I V ASD GNYSC ++P + + + K
Sbjct: 53 ITMDKRRFVSQTN--GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTK 110
Query: 54 PNPAIFRSHPQ 64
P PA +
Sbjct: 111 PYPADIVVQFK 121
Score = 42.2 bits (99), Expect = 6e-06
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYL 48
S L I + D G Y CEA N GK H+A +
Sbjct: 163 SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 43.9 bits (104), Expect = 5e-07
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
R + G +H L+I +D YS T
Sbjct: 48 IPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG 85
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 45.7 bits (108), Expect = 5e-07
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIFRSHP 63
+R R S L+ + + D G Y+CE N +GK H L + P + P
Sbjct: 259 DRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPK---YEQKP 315
Query: 64 Q 64
+
Sbjct: 316 E 316
Score = 42.2 bits (99), Expect = 9e-06
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPA 57
+ + + G +L+ + ASD G+Y C A P G +
Sbjct: 48 YNWQEHNAALRKDEG---SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIA-- 102
Query: 58 IFRSHPQ 64
+
Sbjct: 103 -SPAKTH 108
Score = 40.7 bits (95), Expect = 3e-05
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ L+I+ V D G Y C ATN G +
Sbjct: 358 TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
Score = 36.0 bits (83), Expect = 0.001
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 3/75 (4%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIF 59
+ R G+ + ++ K SD Y C A N E+ G
Sbjct: 149 TDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSG 208
Query: 60 RSHPQGRLPNSYNIT 74
S ++
Sbjct: 209 YKGEPVPQYVSKDMM 223
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 44.2 bits (104), Expect = 6e-07
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQGRLPNS 70
L + + + GNY+ A NP G+ P F +P+ +P++
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP----FEFNPEDPIPDT 113
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 45.5 bits (107), Expect = 6e-07
Identities = 9/67 (13%), Positives = 16/67 (23%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
+ + + + L D G+Y C N R + N
Sbjct: 46 KTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCY 105
Query: 62 HPQGRLP 68
+ Q
Sbjct: 106 NAQAIFK 112
Score = 39.3 bits (91), Expect = 9e-05
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDF-GNYSCEATNPMGKHRAYLEL 50
L I ++ + + ++C A N G AY++L
Sbjct: 261 YYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
Score = 38.6 bits (89), Expect = 2e-04
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 13 TRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
G + L++ V GNY+C A+
Sbjct: 157 FSGVKDRLIVMNVAEKHRGNYTCHASYTYL 186
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 45.6 bits (108), Expect = 6e-07
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMG---KHRAYLELSGKP---NPAIFRSHPQ 64
L I ++ D G Y C A NP + A + + P F P
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPS 229
Score = 44.1 bits (104), Expect = 2e-06
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
++ ++ GS L+I V D G Y+C T A EL+ P F +H
Sbjct: 262 IQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVL-VPPWFLNH 318
Query: 63 PQ 64
P
Sbjct: 319 PS 320
Score = 44.1 bits (104), Expect = 2e-06
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ ++ + + L I VV SD G Y C A N G ++ +L
Sbjct: 352 VVIPSDYFQIVGGSN---LRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
Score = 37.9 bits (88), Expect = 3e-04
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVAS-----DFGNYSCEATNPMGK----HRAYLELS 51
+ L +R+ GS L+I+ ++ S D G Y CEA+ A + ++
Sbjct: 63 LALGMDDRKQQLPNGS---LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA 119
Query: 52 GKPNPAIFRSHPQ 64
G F S +
Sbjct: 120 GPLR---FLSQTE 129
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 44.2 bits (104), Expect = 7e-07
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
L+ E +R + I K + GNY CE T +L
Sbjct: 59 HLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDL 107
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 45.6 bits (108), Expect = 7e-07
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
+ + S L I+ V D G Y CEA N G+ ++ + + +P+ +
Sbjct: 246 GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPD---WLDVIT 302
Score = 41.4 bits (97), Expect = 2e-05
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L + R + S L K+V D G Y C A N G A EL+
Sbjct: 335 LASQNRIEV----SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
Score = 41.4 bits (97), Expect = 2e-05
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK-------HRAYLELSGKPN 55
+ RR + L I K ASD GNYSC AT+ + + L L+ +
Sbjct: 145 IPADGRRFVSQTT--GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA 202
Query: 56 ----PAIFRSHPQ 64
P+I P
Sbjct: 203 RQYAPSIKAKFPA 215
Score = 36.0 bits (83), Expect = 0.001
Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 21/90 (23%)
Query: 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKP------- 54
+ R G ++ V A D G+Y C ATN G A L
Sbjct: 51 GPDSRYRLVAGD--LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEER 108
Query: 55 --------NPAIFRSHPQGRLPNSYNITWM 76
+F P P + + W+
Sbjct: 109 DPVKITEGWGVMFTCSPPPHYP-ALSYRWL 137
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 45.2 bits (107), Expect = 7e-07
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPA 57
L+ + RI G LMI SD G Y C TN +G+ A L + +P+
Sbjct: 151 SPLDDKDERITIRGGK---LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS-- 205
Query: 58 IFRSHPQ 64
F
Sbjct: 206 -FVKAAA 211
Score = 37.5 bits (87), Expect = 4e-04
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVA--SDFGNYSCEATNPMGK---HRAYLELSGKPNPAI 58
+ R++ GS L I D G Y C A N +G+ H A LE++
Sbjct: 56 DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL--RDD 113
Query: 59 FRSHPQ 64
FR +P
Sbjct: 114 FRQNPS 119
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 44.8 bits (106), Expect = 8e-07
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 9/65 (13%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIF 59
++ + R G L I D G Y C A N MG L + + +
Sbjct: 151 VDMSNPRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR---VG 204
Query: 60 RSHPQ 64
H
Sbjct: 205 TKHHH 209
Score = 40.5 bits (95), Expect = 3e-05
Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 8/65 (12%)
Query: 8 RRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMGK---HRAYLEL----SGKPNPAIF 59
++E G L I V D Y C A N +G A L + +
Sbjct: 54 YTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVI 113
Query: 60 RSHPQ 64
P
Sbjct: 114 TQGPG 118
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 44.5 bits (105), Expect = 9e-07
Identities = 16/75 (21%), Positives = 21/75 (28%), Gaps = 18/75 (24%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKP--------------NPAIFRS 61
L I + SD G Y C Y+ L G P P
Sbjct: 69 QLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSC 128
Query: 62 HPQGRLPNSYNITWM 76
QG P ++ W+
Sbjct: 129 QAQGP-PEPVDLLWL 142
Score = 34.5 bits (79), Expect = 0.004
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
G + +L + + + ++SCEA N G
Sbjct: 154 HGPQRSLHVPGL--NKTSSFSCEAHNAKGV 181
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 45.2 bits (107), Expect = 9e-07
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
+ + + + G L +KV D G Y+C A +EL
Sbjct: 287 VLSQGSNGSVSVRNG---DLFFKKVQVEDGGVYTCYAMGETFNETLSVEL 333
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 43.6 bits (103), Expect = 1e-06
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAI 58
+ + T + RI + L IR D G Y+C A+ P G+ AY+E+ P
Sbjct: 47 VLVSTQDSRIKQLENG--VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQ 104
Query: 59 F 59
Sbjct: 105 P 105
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 45.1 bits (106), Expect = 1e-06
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSGKPNPAIFRSHPQ 64
E + TL I V SD G Y+C A++ + + ++ + KP A
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338
Score = 44.7 bits (105), Expect = 1e-06
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
L +++ L IR+V D G Y+C+A + +G A+ + G
Sbjct: 706 TLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 760
Score = 44.0 bits (103), Expect = 3e-06
Identities = 14/59 (23%), Positives = 19/59 (32%)
Query: 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
E TL I KV+ +D G Y C Y+ + +P I Q
Sbjct: 74 VEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQ 132
Score = 42.8 bits (100), Expect = 6e-06
Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 3/66 (4%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPN-PAI 58
+ + + ++ D G+Y C A + +H +L+
Sbjct: 609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPT 668
Query: 59 FRSHPQ 64
+ +
Sbjct: 669 ITGNLE 674
Score = 42.1 bits (98), Expect = 1e-05
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSGKPNPAIFRS 61
H L I +V D GNY+ TNP+ K + + L P I
Sbjct: 381 HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEK 426
Score = 40.5 bits (94), Expect = 4e-05
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
S+ I + S G CEA +++ + + I+
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 225
Score = 39.7 bits (92), Expect = 8e-05
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
+ + ++ + A+ Y CEA N +G+ ++ P
Sbjct: 499 VNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGP 551
Score = 28.2 bits (62), Expect = 0.73
Identities = 4/43 (9%), Positives = 8/43 (18%), Gaps = 4/43 (9%)
Query: 22 IRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
++ V + C T + L
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLD----LPRLSIQKD 39
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 42.9 bits (101), Expect = 1e-06
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L IR V SD G Y C +N + L
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 44.5 bits (105), Expect = 1e-06
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
L I V D G Y C A+N MG H + + P + P+
Sbjct: 275 KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPY---WLDEPK 320
Score = 39.9 bits (93), Expect = 6e-05
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ T++ R S Y C +N G A +S
Sbjct: 365 AGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400
Score = 38.7 bits (90), Expect = 2e-04
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 23/106 (21%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVA----SDFGNYSCEATNPMGK---HRAYLELSGKP 54
+ + R TL+I G Y C A N G +R L++S P
Sbjct: 57 FFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSP 116
Query: 55 ---------------NPAIFRSHPQGRLPNSYNITWMVSSYTPLEE 85
P + +P LP S I WM SS P+ +
Sbjct: 117 LWPKENLDPVVVQEGAPLTLQCNPPPGLP-SPVIFWMSSSMEPITQ 161
Score = 37.2 bits (86), Expect = 5e-04
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 7/66 (10%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASD-FGNYSCEATNPMG---KHRAYLELSGKPNPAI 58
+ +R G L V+ D +YSC A + + L +
Sbjct: 159 ITQDKRVSQGHNG---DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV 215
Query: 59 FRSHPQ 64
P
Sbjct: 216 AERTPS 221
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 42.7 bits (101), Expect = 1e-06
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
L +R + G+R L IR +VA D G Y C GK R L+ + P+ S
Sbjct: 58 LRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGPSS 112
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 44.1 bits (104), Expect = 2e-06
Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIFRS 61
R+ G L+I V D GNY C A N +G A L + K
Sbjct: 159 GASSRVRIVDG--GNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216
Query: 62 H 62
H
Sbjct: 217 H 217
Score = 38.3 bits (89), Expect = 2e-04
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 4 ETTERRIMETRGS-RHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIF 59
E R+ G+ ++ D G Y C A N +G+ A L+++ + F
Sbjct: 54 EKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD--F 111
Query: 60 RSHPQ 64
R P+
Sbjct: 112 RVEPK 116
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 43.9 bits (103), Expect = 2e-06
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
T+ + R L I D G Y+C T + H+
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQD 270
Score = 36.6 bits (84), Expect = 8e-04
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRA 46
L + + D G Y C + G
Sbjct: 52 VLTLTNLTGLDTGEYFCTHNDSRGLETD 79
Score = 27.4 bits (60), Expect = 1.2
Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 28 SDFGNYSCEATNPMG--KHRAYLELSGKPNPAIFRSHPQ 64
+ +Y C+ T AY + + +
Sbjct: 151 FEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAV 189
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 42.1 bits (99), Expect = 2e-06
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+L + R TR + + +R + +D G Y+C ++P G Y ++
Sbjct: 48 QLVESNR----TRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 44.1 bits (104), Expect = 2e-06
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 13 TRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
S L I D G+Y C A N GK + L +PN +
Sbjct: 253 RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPN---WVQIIN 303
Score = 43.7 bits (103), Expect = 3e-06
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIF 59
+ R + + G L I KV SD GNY+C TN + H+ L + + +
Sbjct: 145 YQDNRRFVSQETG---NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMG 201
Query: 60 RSHPQGRLPNSYNIT 74
P+ + +
Sbjct: 202 EYEPKIEVQFPETVP 216
Score = 41.0 bits (96), Expect = 2e-05
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L T +R + + TL I V SD G Y C A N G + ELS
Sbjct: 336 LLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
Score = 38.7 bits (90), Expect = 2e-04
Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 23/101 (22%)
Query: 4 ETTERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGK---HRAYLELSGKP----- 54
+ R GS L+I D G Y C ATN G A L+ +
Sbjct: 51 IGMDFRYSVVDGS---LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTR 107
Query: 55 ----------NPAIFRSHPQGRLPNSYNITWMVSSYTPLEE 85
+ P + W+ + Y ++
Sbjct: 108 TRSTVSVRRGQGMVLLCGPPPHSG-ELSYAWIFNEYPSYQD 147
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 41.9 bits (99), Expect = 2e-06
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
L ++ + G+ L++R + D G YSC + A L ++ P+
Sbjct: 48 LRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQTT--SATLTVTALPSG 99
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 43.8 bits (103), Expect = 3e-06
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 13 TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
+ TL+I+ V D G Y C N +G L+ P + P
Sbjct: 265 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-PLSAKIDPP 315
Score = 39.2 bits (91), Expect = 1e-04
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLEL 50
S L I V D G Y C N A L+L
Sbjct: 351 SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 37.6 bits (87), Expect = 4e-04
Identities = 14/114 (12%), Positives = 28/114 (24%), Gaps = 27/114 (23%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDF------GNYSCEATNPMGK---HRAYLELSGKP 54
+ R + + G L+ A D+ Y+C A N G ++
Sbjct: 48 DVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQ 104
Query: 55 --------------NPAIFRSHPQGRLPN-SYNITWMVSSYTPLEEFKIKYRKI 93
N A+ + + + ++W K
Sbjct: 105 YYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 158
Score = 36.8 bits (85), Expect = 8e-04
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASD-FGNYSCEATNPMGKHR 45
E + ++ G L IR+V D + +Y C + +
Sbjct: 153 EYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGET 192
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 42.2 bits (99), Expect = 3e-06
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 6 TERRIMETRGSRHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLELSGKPNP 56
T I G TL I +V +DF Y+C A N G + L + +
Sbjct: 64 TVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 41.6 bits (98), Expect = 3e-06
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
R + G RH L+ VV D G Y
Sbjct: 57 RYRFKKDGKRHILIFSDVVQEDRGRYQVITNG 88
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 43.5 bits (102), Expect = 3e-06
Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 3 LETTERRIMETRGSRH-----TLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPN 55
+ E+ G + TL I +D G + C A N G LE+ K
Sbjct: 253 TKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGF 312
Query: 56 PAIFRSHPQ 64
IF
Sbjct: 313 INIFPMINT 321
Score = 42.7 bits (100), Expect = 6e-06
Identities = 11/49 (22%), Positives = 13/49 (26%), Gaps = 5/49 (10%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQG 65
I G C+A N +GK G I HP
Sbjct: 475 QSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQI---HPHH 520
Score = 40.0 bits (93), Expect = 6e-05
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 12 ETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
++ + K A++ G Y+C + + Y+ +
Sbjct: 74 TNENKQNEWITEKAEATNTGKYTCTNKHGLSN-SIYVFVRDPAKL 117
Score = 39.3 bits (91), Expect = 1e-04
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L + ++ ++ G Y+ +N +
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVY 408
Score = 28.1 bits (62), Expect = 0.79
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 2/45 (4%)
Query: 16 SRHTLMIRKVVAS-DFGNYSCEATNPMG-KHRAYLELSGKPNPAI 58
+ +MI+ V + C L +P
Sbjct: 166 PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKA 210
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 43.0 bits (101), Expect = 3e-06
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
R ++ + L+ V A D G Y C+A N G
Sbjct: 154 TRAFMNSSFTIDPKSG--DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAA 201
Score = 40.0 bits (93), Expect = 4e-05
Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 4/68 (5%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQGRLPNSYNITW- 75
+ V D G Y+C + G+ + L+ P+ +
Sbjct: 66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLT 125
Query: 76 -MVSSYTP 82
+P
Sbjct: 126 CSEHDGSP 133
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 43.3 bits (101), Expect = 3e-06
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP 63
++ ++ V SD G Y+C + R + L + P
Sbjct: 202 SIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISP 246
Score = 39.1 bits (90), Expect = 1e-04
Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 5/112 (4%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIF 59
R + + +T + +L+++ V +D G Y+CE + +EL P
Sbjct: 68 RFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD 127
Query: 60 RSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQY 111
G ++ + + S K+ + G+ + +N
Sbjct: 128 LRVRVG---DTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMR 176
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 43.1 bits (101), Expect = 3e-06
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ ++ + G YSC N +G + L L
Sbjct: 176 PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209
Score = 41.6 bits (97), Expect = 1e-05
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 7/111 (6%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
R+ T + S + + + SD G Y C+ G L+ P+ R
Sbjct: 71 RVHFTSNDVKSGDAS---INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRC 127
Query: 62 HPQGRLPNSYNITW--MVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQ 110
G + + + +++K+ ++ P T+
Sbjct: 128 FVDGSEEIGNDFKLKCEPKEGSL--PLQFEWQKLSDSQTMPTPWLAEMTSP 176
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 43.4 bits (102), Expect = 4e-06
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELSGKPNPAIFR 60
L + R + TL + V +D Y C N + +R+ + L P
Sbjct: 506 SLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPI 563
Query: 61 SHPQ 64
P
Sbjct: 564 ISPP 567
Score = 43.0 bits (101), Expect = 5e-06
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK-HRAYLELSGKPNPAIFR 60
L + R + TL + V +D G Y C N + H + L+ P
Sbjct: 328 SLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPT 385
Query: 61 SHPQ 64
P
Sbjct: 386 ISPS 389
Score = 41.9 bits (98), Expect = 1e-05
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
S L I + ++ G+Y+C+A N ++ P
Sbjct: 246 STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSN 296
Score = 40.3 bits (94), Expect = 4e-05
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 2/49 (4%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
L I + + G Y+C+A N ++
Sbjct: 426 QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSN 474
Score = 39.6 bits (92), Expect = 8e-05
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAI 58
L + R + TL + V +D +Y CE NP+ R L + P+
Sbjct: 150 SLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPT 207
Query: 59 FRSHPQ 64
Sbjct: 208 ISPLNT 213
Score = 38.4 bits (89), Expect = 2e-04
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
L I K+ ++ G Y+C +N + S
Sbjct: 605 VLFIAKITPNNNGTYACFVSNLATGRNNSIVKS 637
Score = 36.1 bits (83), Expect = 0.001
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLELSGKPN-PAIFRS 61
+ R I+ +L+I+ ++ +D G Y+ + A + P P S
Sbjct: 60 AYSGREIIYPNA---SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSIS 116
Query: 62 HPQ 64
Sbjct: 117 SNN 119
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 43.0 bits (100), Expect = 4e-06
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 1/106 (0%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
L+T+ + ++ R L +R S G C + + ++L P
Sbjct: 43 RGLDTSLGAV-QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLT 101
Query: 61 SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLT 106
P +P + TP++ + + + G + + L
Sbjct: 102 VSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALG 147
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 43.2 bits (101), Expect = 4e-06
Identities = 11/47 (23%), Positives = 14/47 (29%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
+ R + TL I D G + C A N G L
Sbjct: 238 HNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284
Score = 36.2 bits (83), Expect = 0.001
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 12 ETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAI 58
++ + K A+ G Y+C +N + Y+ + +
Sbjct: 51 MVENKKNEWIQEKAEATRTGTYTCSNSNGLTS-SIYVFVRDPAKLFL 96
Score = 27.8 bits (61), Expect = 0.88
Identities = 5/25 (20%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 16 SRHTLMIRKVV-ASDFGNYSCEATN 39
+ + I+ V A C A
Sbjct: 143 PKAGITIKNVKRAYHRLCVRCAAQR 167
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 42.9 bits (100), Expect = 5e-06
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 12 ETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKP 54
E + TL I V SD G Y+C A++ + K+ ++ + P
Sbjct: 165 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209
Score = 32.5 bits (73), Expect = 0.020
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSGKPNPAIFRSHPQ 64
S+ I + S G CEA ++ Y+ + P
Sbjct: 62 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPS 112
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 43.2 bits (101), Expect = 5e-06
Identities = 11/56 (19%), Positives = 18/56 (32%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
L + + + GNY+ A NP G+ A + + NP
Sbjct: 292 FIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 36.3 bits (83), Expect = 0.001
Identities = 12/112 (10%), Positives = 27/112 (24%), Gaps = 26/112 (23%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL---------- 50
+ T + + + N +C A N +G+ +++
Sbjct: 197 LEQSATVMKSGGLPSLG-LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQL 255
Query: 51 ---------------SGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFK 87
G+P P++ L + I E +
Sbjct: 256 HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 307
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 42.6 bits (100), Expect = 5e-06
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 3/57 (5%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIFRSHPQGRLP 68
G+ L+ V D G Y C N + L++ P
Sbjct: 62 GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESK 118
Score = 42.6 bits (100), Expect = 5e-06
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 13 TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELSGKPNPAIFRSHPQGR 66
T ++ M+ V G Y C N + +E+ + HP +
Sbjct: 160 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL--GHPDNK 212
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 42.9 bits (100), Expect = 5e-06
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
+ E RI + + L R + +D GNY+C N + L + F
Sbjct: 65 INFRLPENRISK---EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFN 121
Query: 61 S 61
S
Sbjct: 122 S 122
Score = 42.2 bits (98), Expect = 9e-06
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLELSGKPNPAIFR 60
E+ E L I+KV + D +Y C A + G+ ++ K +
Sbjct: 282 ESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYT 339
Score = 33.7 bits (76), Expect = 0.008
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMG 42
L + S+ GNY+C T P
Sbjct: 175 EGMNLSFLIALISNNGNYTCVVTYPEN 201
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 42.4 bits (100), Expect = 9e-06
Identities = 14/44 (31%), Positives = 17/44 (38%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
TL V+ SD G Y+C TN G A L+ H
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHH 451
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 42.1 bits (98), Expect = 1e-05
Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 24/103 (23%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK-----HRAYLELSGKPNPAIFRSHP 63
++ + TL + GN + GK + + +
Sbjct: 248 QMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQK-------- 299
Query: 64 QGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLT 106
N+T V T K+ N+ + +S +
Sbjct: 300 --------NLTCEVWGPTSP---KLMLSLKLENKEAKVSKREK 331
Score = 41.3 bits (96), Expect = 2e-05
Identities = 13/108 (12%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS---GKPNPAIFRSHPQGRLPNSYN 72
TL + ++ D G ++C K +++ + +I ++ S+
Sbjct: 140 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFP 199
Query: 73 ITWMVSSYTPLEEFKIKYRKIPGNEP----SPMSNQLTGTNQYQNRRL 116
+ + V T E + + ++ + +++ Q+ +L
Sbjct: 200 LAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKL 247
Score = 40.6 bits (94), Expect = 4e-05
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLELSGKPNPAI 58
+ + R L+I+ + D Y CE + + + L+ + +
Sbjct: 53 DRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL 108
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 40.5 bits (95), Expect = 1e-05
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
R ++ +G TL I+ + SD G Y+C AT+ G+ A L+
Sbjct: 53 DPRATIQEQG---TLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 40.0 bits (94), Expect = 1e-05
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 13 TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
T ++ M+ V G Y C N +
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDS 78
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 41.5 bits (97), Expect = 1e-05
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSGKPNPAI 58
+ R L+I+ + D Y CE + + + L+ + +
Sbjct: 56 ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL 109
Score = 38.0 bits (88), Expect = 2e-04
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
TL + ++ D G ++C K +++
Sbjct: 143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV 176
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 40.4 bits (94), Expect = 2e-05
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
T+ I +V D G Y C A+N ++
Sbjct: 90 STISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 40.9 bits (96), Expect = 3e-05
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNP 56
TL V D G Y+C +N +G A L +G +
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHH 437
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 40.6 bits (95), Expect = 3e-05
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 12 ETRGSRHTLMIRKVVASDFGNYSCEATNPMG-KHRAYLELSGKPNPAIFRSHPQ 64
S I K A D G Y C K A +E+ P+ H +
Sbjct: 50 RKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPD---ITGHKR 100
Score = 39.8 bits (93), Expect = 5e-05
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 8 RRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMGK--HRAYLE 49
R + + + L I + + D G Y C ATN +G L
Sbjct: 143 RFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 40.7 bits (95), Expect = 3e-05
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
+ + R + I D G Y CEA G
Sbjct: 212 GSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVL 250
Score = 37.2 bits (86), Expect = 5e-04
Identities = 7/58 (12%), Positives = 13/58 (22%), Gaps = 2/58 (3%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
+ + L I K S G Y C + + + +
Sbjct: 122 KAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVT 179
Score = 30.3 bits (68), Expect = 0.12
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
+ S + I +D G Y C+ LE+
Sbjct: 44 QTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGW 84
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 39.0 bits (90), Expect = 5e-05
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 12 ETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKP 54
E + TL I V SD G Y+C A++ + K+ ++ + KP
Sbjct: 68 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 40.1 bits (93), Expect = 5e-05
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 5/97 (5%)
Query: 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
E ++ +R + + D G Y C G + P + + PQ
Sbjct: 210 LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQ 269
Query: 65 --GRLPNSYNITWMVSSYT---PLEEFKIKYRKIPGN 96
I +S P+ +++Y G+
Sbjct: 270 LASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS 306
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 39.6 bits (92), Expect = 6e-05
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
L+ TER + S L I + D G Y CE +NP+ R+
Sbjct: 150 LQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRS 191
Score = 33.9 bits (77), Expect = 0.006
Identities = 6/48 (12%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGK-HRAYLELSGKPNPAIFRSHPQ 64
+L+ + + D G Y+ + T+ + +A +
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVT 118
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 38.4 bits (89), Expect = 9e-05
Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEA-TNPMGKHRAYLELSGKPNPAIFRSHPQGRL 67
+++ ++ ++ + V D G Y C ++ + + + R +P
Sbjct: 57 QLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCR-YPSHWR 115
Query: 68 PNSY 71
P +
Sbjct: 116 PLEH 119
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 38.7 bits (90), Expect = 9e-05
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
++ H + I D G Y C +
Sbjct: 125 EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYE 161
Score = 32.2 bits (73), Expect = 0.021
Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 14/75 (18%)
Query: 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP-------------NPAIFR 60
+ +L I D G Y C+ YLE+ P R
Sbjct: 47 EETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLR 106
Query: 61 SHPQGRLPNSYNITW 75
H Y + +
Sbjct: 107 CHGWRNWDV-YKVIY 120
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 38.6 bits (90), Expect = 1e-04
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
+ + T I + S G+Y C
Sbjct: 125 KSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFS 161
Score = 33.6 bits (77), Expect = 0.006
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
K +D G Y+C+ +L + +
Sbjct: 47 PTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEW 87
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 39.0 bits (90), Expect = 1e-04
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAI 58
L+I D G Y C + + + +S +
Sbjct: 182 QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTV 222
Score = 37.1 bits (85), Expect = 7e-04
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 1/40 (2%)
Query: 12 ETRGSRHTLMIRKVVASDFGN-YSCEATNPMGKHRAYLEL 50
+ TL V GN Y+C N +
Sbjct: 287 SGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Score = 32.1 bits (72), Expect = 0.029
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 13 TRGSRHTLMIRKVVASDFGN-YSCEATNPMGK-HRAYLELSGKPNPAIFRS 61
R L I ++D Y C T G + + + P+
Sbjct: 84 RRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPE 134
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 38.7 bits (90), Expect = 2e-04
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
L+ + + + G+ + L I +V D G Y+ A N G + L
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 38.8 bits (89), Expect = 2e-04
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQG 65
I T +++I ++ SD G Y C+A + ++ +L
Sbjct: 176 DIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLR 232
Score = 38.1 bits (87), Expect = 3e-04
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 10/128 (7%)
Query: 2 RLETTERRIMETRGSRH---TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAI 58
R E RI+ + +++I + D G Y C A + + +
Sbjct: 271 RAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE 330
Query: 59 FRSHPQGRLPNSYNITWMVS-----SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQN 113
+ P+ P S Y E IKY + + L + +
Sbjct: 331 ESTIPRS--PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVK 388
Query: 114 RRLVRKIT 121
+ +++
Sbjct: 389 AQYEGRLS 396
Score = 35.0 bits (79), Expect = 0.003
Identities = 13/106 (12%), Positives = 27/106 (25%), Gaps = 1/106 (0%)
Query: 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNI 73
+ I ++ D G Y C + L P + + +
Sbjct: 71 ENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTV 130
Query: 74 TWM-VSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVR 118
T ++ K Y++I + + Y R +
Sbjct: 131 TINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLD 176
Score = 34.2 bits (77), Expect = 0.007
Identities = 7/58 (12%), Positives = 14/58 (24%), Gaps = 3/58 (5%)
Query: 10 IMETRGSRHTLMIRKVVASDFGNYSCEATNPMG---KHRAYLELSGKPNPAIFRSHPQ 64
+ +L + V +D G Y C Y+ + +
Sbjct: 501 NCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLA 558
Score = 31.5 bits (70), Expect = 0.063
Identities = 11/102 (10%), Positives = 31/102 (30%), Gaps = 9/102 (8%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIF-RSHPQGRLPNSYNIT-WM 76
T+++ ++ + D G Y C + P + + L + +
Sbjct: 407 TVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHF 466
Query: 77 VSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVR 118
++ E++ K+ L ++ ++ V
Sbjct: 467 PCKFSSYEKYWCKWNN-------TGCQALPSQDEGPSKAFVN 501
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 36.3 bits (83), Expect = 4e-04
Identities = 11/53 (20%), Positives = 14/53 (26%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
R E + L I KVV D G Y E + +
Sbjct: 64 RFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 36.3 bits (84), Expect = 4e-04
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 4 ETTERRIMETRGSRHTLMI--RKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAI 58
+ R++ GS L I + D G Y C A N +G+ H A LE++ +
Sbjct: 56 DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH--- 112
Query: 59 FRSH 62
H
Sbjct: 113 HHHH 116
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 36.8 bits (85), Expect = 5e-04
Identities = 6/37 (16%), Positives = 9/37 (24%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
+ + I K D G+Y C
Sbjct: 128 KDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVS 164
Score = 34.1 bits (78), Expect = 0.005
Identities = 7/41 (17%), Positives = 11/41 (26%)
Query: 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
+ I +D G Y C+ LE+
Sbjct: 50 SSQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGW 90
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 36.0 bits (83), Expect = 5e-04
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 13 TRGSRHTLMIRKVVASDFGNYSCE-ATNPMGKHRAYLELSGKPNPAIFRS 61
G L ++ + +D G Y C T P G + + L +
Sbjct: 66 APGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHG 115
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 37.2 bits (85), Expect = 5e-04
Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 8/66 (12%)
Query: 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR--------AYLELSGKPNPAI 58
R + TL + V D G Y C+ + P+ +
Sbjct: 79 LGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNV 138
Query: 59 FRSHPQ 64
S +
Sbjct: 139 HVSTAE 144
Score = 36.8 bits (84), Expect = 6e-04
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRA 46
L+IR +D G CE G+ A
Sbjct: 214 NLVIRAAKITDAGRVWCELATGQGELDA 241
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 36.6 bits (85), Expect = 7e-04
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
TL +R D G Y C A N G L
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 36.6 bits (84), Expect = 8e-04
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 22 IRKVVASDFGNYSCEATNPMGKHRAYLELS 51
V G Y C A + G+ + ++
Sbjct: 232 SVTVTRDLEGTYLCRARSTQGEVTREVTVN 261
Score = 29.3 bits (65), Expect = 0.26
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 12 ETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY 47
+ G R L+++ + ++SC AT + +
Sbjct: 136 QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIH 171
Score = 25.8 bits (56), Expect = 4.4
Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAI 58
RL T ++ ++ ++ + +C ++ PA
Sbjct: 46 RLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAP 101
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 35.6 bits (82), Expect = 9e-04
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
++ + + SD G Y C+ G + L
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 36.3 bits (83), Expect = 0.001
Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 8/103 (7%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQGRLPNSYN 72
+ TL + + + G+Y + + + L + + + PQ +S
Sbjct: 49 NNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQT 108
Query: 73 ------ITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTN 109
TP + +++ Y G + + +T
Sbjct: 109 DVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQE 151
Score = 36.3 bits (83), Expect = 0.001
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPMGK 43
+ + I++ A G Y+ +
Sbjct: 142 DTTQDITIQEFTADKNGVYTVKVWGESED 170
Score = 32.9 bits (74), Expect = 0.019
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK 53
L D + C A +E++
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQIEDETVEVAAS 293
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 35.2 bits (81), Expect = 0.001
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEA-TNPMGKHRAYLELSGKP 54
++ ++ + V SD G Y+C T P+ +AYL + G P
Sbjct: 62 ELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 36.0 bits (82), Expect = 0.001
Identities = 7/49 (14%), Positives = 9/49 (18%), Gaps = 3/49 (6%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG---KHRAYL 48
+ E H + G Y C YL
Sbjct: 152 IGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYL 200
Score = 32.6 bits (73), Expect = 0.021
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH 44
+ I + + G Y C+ + K
Sbjct: 39 KMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKP 75
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 35.3 bits (81), Expect = 0.002
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLEL-----SGKPNPAIFRSHP 63
L I+ V SD G Y+C + + A +EL NP RSH
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPGRSRSHH 135
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 35.4 bits (81), Expect = 0.002
Identities = 9/38 (23%), Positives = 11/38 (28%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
I V D G Y C YL + K +
Sbjct: 68 LFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASY 105
Score = 35.4 bits (81), Expect = 0.002
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAI 58
+ I G + ++ N+SC N A ++ + P +
Sbjct: 141 SVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKV 199
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 35.2 bits (81), Expect = 0.002
Identities = 6/37 (16%), Positives = 9/37 (24%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
+ + I K D G+Y C
Sbjct: 128 KGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVS 164
Score = 31.4 bits (71), Expect = 0.041
Identities = 7/41 (17%), Positives = 10/41 (24%)
Query: 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
+ I D G Y C+ LE+
Sbjct: 50 SSQASSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGW 90
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 35.6 bits (81), Expect = 0.002
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
V G Y C A + G+ + ++
Sbjct: 413 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 446
Score = 34.5 bits (78), Expect = 0.005
Identities = 15/120 (12%), Positives = 29/120 (24%), Gaps = 9/120 (7%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
+ET + + + + C + P G+ A L+ P
Sbjct: 33 IETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELA 92
Query: 63 PQGRLP---NSYNITWMVSSYTPLEEFKIKYRKIPGNEP----SPMSNQLTGTNQYQNRR 115
P + + V P + + G + + T RR
Sbjct: 93 PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR--GEKELKREPAVGEPAEVTTTVLVRR 150
Score = 32.1 bits (72), Expect = 0.036
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY 47
G R L+++ + ++SC AT + +
Sbjct: 324 GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIH 356
Score = 31.4 bits (70), Expect = 0.055
Identities = 6/48 (12%), Positives = 13/48 (27%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ +R + T + N+SC + L +
Sbjct: 128 KELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFEN 175
Score = 27.1 bits (59), Expect = 1.6
Identities = 13/105 (12%), Positives = 26/105 (24%), Gaps = 6/105 (5%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNY--SCEATNPMGKHRAYLELSGKPNPAIFRS 61
+ + S V A D G +C ++ PA
Sbjct: 230 QRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI 289
Query: 62 HPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLT 106
+ + +T ++ + + +P P QL
Sbjct: 290 LTKPEVSEGTEVTVKCEAHPRAK---VTLNGVPAQPLGP-RAQLL 330
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.002
Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 40/126 (31%)
Query: 11 METRGSRHTLMI------RKVVASDFG-----NYSCEATNPMGKHRAYLELSGKPN--PA 57
+E + H ++ + + D Y + +G H +E +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY---SHIGHHLKNIEHPERMTLFRM 495
Query: 58 IFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLV 117
+F + ++ E KI++ N + N L Y+
Sbjct: 496 VF-----------LDFRFL--------EQKIRHDSTAWNASGSILNTLQQLKFYKPY--- 533
Query: 118 RKITEN 123
I +N
Sbjct: 534 --ICDN 537
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 35.5 bits (81), Expect = 0.002
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVS 78
L I V ASD G Y C + +A +EL + +G I
Sbjct: 84 ALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKG--YKDGGIHLECR 141
Query: 79 SYTPLEEFKIKYRKIPGNEPSPMSNQLT 106
S + +I++ G + +
Sbjct: 142 STGWYPQPQIQWSNNKGENIPTVEAPVV 169
Score = 27.7 bits (61), Expect = 0.79
Identities = 5/48 (10%), Positives = 11/48 (22%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+ + G + S SC + + +S
Sbjct: 163 TVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASIS 210
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 34.0 bits (77), Expect = 0.005
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEA-TNPMGKHRAYLELSGKPNP 56
+++ + ++ I V +D G Y+C T P+ ++ + + G P
Sbjct: 94 QLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQK 142
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 33.5 bits (76), Expect = 0.005
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMG 42
L +R V + G Y C +N G
Sbjct: 77 ILRLRNVEFTSEGXYQCVISNHFG 100
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 33.4 bits (76), Expect = 0.005
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 19 TLMIRKVVASDFGNYSCE-ATNPMGKHRAYLELS 51
TL + + D GNY+CE AT P G R L
Sbjct: 94 TLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLR 127
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 33.7 bits (77), Expect = 0.008
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRA 46
TL I+ + D Y + GK+
Sbjct: 67 TLKIKHLKTDDQDIYKVSIYDTKGKNVL 94
Score = 33.3 bits (76), Expect = 0.010
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
++ K S + C A N + K + +S
Sbjct: 143 LSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 33.0 bits (75), Expect = 0.012
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGK 43
L I+ + D G Y+ + G
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNGT 86
Score = 29.9 bits (67), Expect = 0.16
Identities = 4/36 (11%), Positives = 12/36 (33%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
S + + + C+A N + + ++
Sbjct: 138 SLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 173
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 32.9 bits (74), Expect = 0.018
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 3/94 (3%)
Query: 12 ETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSY 71
G L++R V D GNYSC +L + P + ++
Sbjct: 54 RWAGMGRRLLLRSVQLHDSGNYSCYRAGRP-AGTVHLLVDVPPEEPQLSCFRKSP-LSNV 111
Query: 72 NITWMVSSYTPLE-EFKIKYRKIPGNEPSPMSNQ 104
W S L + + RK +
Sbjct: 112 VCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEP 145
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 32.7 bits (74), Expect = 0.020
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 2/54 (3%)
Query: 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNP 56
TT + ++ + + C H A L + P
Sbjct: 162 TTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLA 215
Score = 30.7 bits (69), Expect = 0.089
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 19 TLMIRKVVASDFGNYSCEATN-PMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNIT 74
L I V D G Y C + R ++++ N R + + + +T
Sbjct: 81 ALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELT 137
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 31.5 bits (71), Expect = 0.022
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 4 ETTERRIMETRGSRHTLMIRKVVASDFGNY-SCEATNPMGKHRAYLELSGKPNPA 57
R +E +G +H L++ V D G + A L + P+
Sbjct: 58 PGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPG--VQDSAALTIQESSGPS 110
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 31.7 bits (72), Expect = 0.023
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 19 TLMIRKVVASDFGNYSCE-ATNPMGKHRAYLELS--GKP 54
+L + + D GNY+C T P G + L KP
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 31.1 bits (70), Expect = 0.044
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKH 44
+++I + SD G ++C+ NP
Sbjct: 82 SIVIHNLDYSDNGTFTCDVKNPPDIV 107
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 31.3 bits (70), Expect = 0.057
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
LE +R+ +ET+ + V+ C A + + +
Sbjct: 140 FLEDADRKSLETKSL--EVTFTPVIEDIGKVLVCRAKLHIDEMDS 182
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 31.3 bits (69), Expect = 0.059
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-------RAYLELSGK 53
++ E+ + +M + L+I + D G Y C + + + LE+
Sbjct: 573 LKAESPKYGLMGRKN----LLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV 628
Query: 54 PNPAIFRSHPQGRLPNS 70
P P + + + S
Sbjct: 629 PKPVVAPTLSVVQTEGS 645
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 30.4 bits (68), Expect = 0.100
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 19 TLMIRKVVASDFGNYSCE-ATNPMGKHRAYLELS--GKPNPAIFRSHPQGRLPNSYNITW 75
+L + + D G+Y+C T P G + L KP Q
Sbjct: 79 SLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARC 138
Query: 76 MVSSYTP 82
+ + P
Sbjct: 139 VSTGGRP 145
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 30.4 bits (68), Expect = 0.11
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 5/122 (4%)
Query: 3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKP-NPAIF 59
LET+ RR RG R + C +A + +P +
Sbjct: 36 LETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPDRVELM 95
Query: 60 RSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRK 119
P + ++ ++ V P + + G + + + + L
Sbjct: 96 PLPPWQPVGENFTLSCRVPGAGPRASLTLTLLR--GAQELIRRSFAGEPPRARGAVLTAT 153
Query: 120 IT 121
+
Sbjct: 154 VL 155
Score = 28.1 bits (62), Expect = 0.72
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH 44
+ + RG+ T + N+SC A + H
Sbjct: 133 LIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPH 176
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 30.2 bits (67), Expect = 0.13
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH 44
I +++T + G Y C+
Sbjct: 143 SIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETSNP 179
Score = 25.6 bits (55), Expect = 3.9
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYL 48
+ + + +H ++ D G Y C YL
Sbjct: 36 QELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYL 75
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 29.8 bits (66), Expect = 0.16
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEA-TNPMGKHRAYLELS--GKPNP 56
T R S+ L++ + D +Y C G A L+ KP
Sbjct: 64 TRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEA 118
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 30.0 bits (66), Expect = 0.20
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 13 TRGSRHTLMIRKVVASDFGNYSCEAT 38
+ L I + A +G+Y CEA
Sbjct: 547 HQSPNCILFIENLTAQQYGHYFCEAQ 572
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 29.4 bits (65), Expect = 0.20
Identities = 9/46 (19%), Positives = 14/46 (30%)
Query: 7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG 52
R + TL + V D G Y C+ + L+
Sbjct: 81 LGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKS 126
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.26
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 19/65 (29%)
Query: 59 FRSH---PQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRR 115
R + P LP S ++ E PSPM + ++ Q Q +
Sbjct: 308 VRCYEAYPNTSLPPS-----ILEDSLENNE----------GVPSPMLS-ISNLTQEQVQD 351
Query: 116 LVRKI 120
V K
Sbjct: 352 YVNKT 356
Score = 27.7 bits (61), Expect = 1.0
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 24/73 (32%)
Query: 7 ERRIMETRGSR-HTLMIRKVVASDFGNYSCEATNPMGKH----RAYLE---LSGKP---- 54
E + G+ H L A E + K + Y+ ++ +P
Sbjct: 92 ENCYL--EGNDIHAL-----AAK----LLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 55 -NPAIFRSHPQGR 66
N A+FR+ +G
Sbjct: 141 SNSALFRAVGEGN 153
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 28.7 bits (64), Expect = 0.28
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 19 TLMIRKVVASDFGNYSC-----EATNPMGKHRAYLELS 51
TL + + D G Y C + T + H+ ELS
Sbjct: 70 TLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELS 107
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 28.7 bits (64), Expect = 0.35
Identities = 4/36 (11%), Positives = 12/36 (33%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
S + + + C+A N + + ++
Sbjct: 143 SLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 178
Score = 26.0 bits (57), Expect = 2.9
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAY 47
L I V D G+Y +
Sbjct: 70 ALRIYNVSKEDRGDYYMRMLHETEDQWKI 98
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 28.6 bits (64), Expect = 0.35
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLEL--SGKPNPA 57
L +R R ++ I + + G YSC + L+L + +
Sbjct: 41 SLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTP 100
Query: 58 IFRSHPQGRLPNSYNITWMVSSYTPLEEF 86
HP + + +T+ T F
Sbjct: 101 TLSVHPGPEVISGEKVTFYCRLDTATSMF 129
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 28.7 bits (64), Expect = 0.43
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLEL--SGKPNPA 57
L +R R ++ I + + G YSC + L+L + +
Sbjct: 44 SLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTP 103
Query: 58 IFRSHPQGRLPNSYNITWMVSSYTPLEEF 86
HP + + +T+ T F
Sbjct: 104 TLSVHPGPEVISGEKVTFYCRLDTATSMF 132
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 28.3 bits (63), Expect = 0.57
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
+R+ ++ I + G Y C +P+G
Sbjct: 42 SPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG 82
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 27.6 bits (61), Expect = 0.66
Identities = 12/39 (30%), Positives = 13/39 (33%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA 57
+L I V D G Y C P H L KP
Sbjct: 75 SLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELV 113
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 27.6 bits (61), Expect = 0.76
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLE-LSGKPNPAIFRS 61
+L I + +SD Y E+ N + +L L P I+
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWE 104
Score = 26.4 bits (58), Expect = 2.3
Identities = 4/36 (11%), Positives = 12/36 (33%)
Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
S + + + C+A N + + ++
Sbjct: 133 SLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 168
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 27.9 bits (62), Expect = 0.80
Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 5/126 (3%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLEL--SGKPNPA 57
E + + ++ I + G Y C +P G + LEL +G N
Sbjct: 42 SPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKP 101
Query: 58 IFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLV 117
+ P + + N+T S + F + + + +QLT + Q+Q V
Sbjct: 102 TLSALPSPVVTSGENVTLQCGSRLRFDRFIL-TEEGDHKLSWTLDSQLTPSGQFQALFPV 160
Query: 118 RKITEN 123
+T +
Sbjct: 161 GPVTPS 166
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 27.6 bits (61), Expect = 0.92
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAI--FRSHPQGRLPNSYNITWM 76
+L + + D G+Y + + + L +H Q + +
Sbjct: 71 SLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLT 130
Query: 77 VSS 79
S
Sbjct: 131 CSV 133
Score = 26.9 bits (59), Expect = 1.8
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 16 SRHTLMIRKVV-ASDFGNYSCEATNPMG 42
S+ L + S +Y+C A N +
Sbjct: 153 SQPNLTVSWDPRISSEQDYTCIAENAVS 180
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.8 bits (61), Expect = 0.99
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 21/83 (25%)
Query: 36 EATNPMGKHR--AYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEE--FKIKYR 91
P+ R + LELS ++V +Y P E ++
Sbjct: 139 AKVPPL--IRIVSGLELSDTKQK---------------GKKFLVIAYEPFENIAIELPPN 181
Query: 92 KIPGNEPSPMSNQLTGTNQYQNR 114
+I +E + M N G ++ +
Sbjct: 182 EILFSENNDMDNNNDGVDELNKK 204
>2pnd_A V-SET and immunoglobulin domain containing 4; complement
receptor, IG-like domain, immune system; 1.00A {Mus
musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 26.8 bits (59), Expect = 1.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 19 TLMIRKVVASDFGNYSCEATN 39
+L I + D +Y+CE T
Sbjct: 79 SLQINTLQMDDRNHYTCEVTW 99
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 26.9 bits (60), Expect = 1.2
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 9 RIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY------LELSGKPNPAIFR 60
RI++T+ GS +TL I+ + D G Y C+ H L + G +
Sbjct: 67 RIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTLDQLK 125
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 26.6 bits (58), Expect = 2.2
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQGRLPNSYNITWM 76
+L + + + G Y CE K + ++L P + G N
Sbjct: 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLL-LDQVGMKENEDKYMCE 141
Query: 77 VSSYTPLE 84
S + P
Sbjct: 142 SSGFYPEA 149
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 26.2 bits (58), Expect = 2.4
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-----LELSGKPNPA 57
S TL I+ + D G Y C+ L + G A
Sbjct: 77 ESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFSTLA 124
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 26.3 bits (58), Expect = 2.7
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA----YLELSGKPNPAIFRSHPQGRLPNS 70
+ L I + S G Y C N L +G + P + +
Sbjct: 49 QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSG 108
Query: 71 YNITWMVSSYTPLEEF 86
++T + ++F
Sbjct: 109 GDVTLQCQTRYGFDQF 124
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 26.0 bits (57), Expect = 3.3
Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-------YLELSGKPNPAIFRSHPQGR 66
S+ I ++ + G Y C + ++ + ++G + P +
Sbjct: 170 GVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPK 229
Query: 67 LPNSYNITWMVSSYTPLEEF 86
+ ++T SS + + +
Sbjct: 230 VQAGESVTLSCSSRSSYDMY 249
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 26.0 bits (56), Expect = 3.4
Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 10/105 (9%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYN------ 72
+L I D G+Y +Y + P
Sbjct: 83 SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTR 142
Query: 73 ----ITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQN 113
+ + PL P + + S++LT T + ++
Sbjct: 143 LSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPED 187
Score = 25.6 bits (55), Expect = 5.1
Identities = 3/26 (11%), Positives = 7/26 (26%)
Query: 18 HTLMIRKVVASDFGNYSCEATNPMGK 43
L + N +C+ +
Sbjct: 177 SELTLTPRPEDHGTNLTCQMKRQGAQ 202
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized
conserved protein, structural genomics, NPPSFA; 2.10A
{Thermus thermophilus}
Length = 420
Score = 26.1 bits (56), Expect = 3.4
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 36 EATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMV 77
+ G+ YL S P F R P N+ WMV
Sbjct: 321 QEAERWGEKARYLLPSVDPTSPFFEPGRYWRGPVWINVNWMV 362
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 25.8 bits (55), Expect = 4.2
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 6/106 (5%)
Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNS 70
E GS TL I+ D G Y+C + H + L L K + + +
Sbjct: 44 SEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSH-SLLLLHKKEDGIWSTDILKDQKEPK 102
Query: 71 YNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRL 116
+ F + + + +
Sbjct: 103 NKTFLRCEAKNYSGRFTCWWLT-----TISTDLTFSVKSSRGSSDP 143
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 25.3 bits (55), Expect = 4.3
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
+L+I+ V D G Y C P + LEL
Sbjct: 73 SLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELK 105
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 25.6 bits (55), Expect = 4.3
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 19 TLMIRKVVASD-FGNYSCEATNPMGKHRAYLELS 51
+L + K A GNY+CE T + +EL
Sbjct: 79 SLKMDKSDAVSHTGNYTCEVTELTREGETIIELK 112
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 25.7 bits (56), Expect = 4.6
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMG-----KHRAYLELSGKPNPAIFRSHPQGRLPNS 70
+++I + SD G Y C +H A + LS K + ++
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN 122
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 25.6 bits (55), Expect = 4.8
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 19 TLMIRKVVASDFGNYSCEATNPMGKH 44
T + N+SC +
Sbjct: 143 TTTVLVRRDHHGANFSCRTELDLRPQ 168
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 25.3 bits (55), Expect = 4.8
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 19 TLMIRKVVASDFGNYSC--EATNPMGKHRAYLELSGKPNPA 57
+L I V SD G Y C E + L KP
Sbjct: 74 SLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV 114
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1;
immunoglobulin-like folds, immune system; 1.80A {Homo
sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A
1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 25.6 bits (56), Expect = 5.3
Identities = 6/39 (15%), Positives = 11/39 (28%)
Query: 2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP 40
+ RI + + I + G Y C +
Sbjct: 42 KTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD 80
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 24.9 bits (54), Expect = 6.9
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 15 GSRHTLMIRKVVASDFGNYSCEATN 39
+++ L + K + G Y C +
Sbjct: 82 NNKYVLTLNKFSKENEGYYFCSVIS 106
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 25.3 bits (56), Expect = 8.1
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 46 AYLELSGKPNPAIFRSHPQGRLPNSYNITWMV-SSYTPLEEF 86
AYL + + ++H + +LP +Y MV ++T L+E
Sbjct: 905 AYLVNRTQLSAEDVKAHLKKQLP-AY----MVPQTFTFLDEL 941
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL;
2.80A {Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 24.4 bits (52), Expect = 8.8
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 20 LMIRKVVASDFGNYSCEATNPMG 42
L V+ +D G+Y C A
Sbjct: 75 LHFEPVLPNDNGSYRCSANFQSN 97
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.2 bits (55), Expect = 8.9
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 7 ERRIMETRGSRHTLMIRKVVASDFGNYS 34
E I+E H+ IR + F Y+
Sbjct: 895 ETSILE-----HSG-IRLIEPELFNGYN 916
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.387
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,865,847
Number of extensions: 100303
Number of successful extensions: 666
Number of sequences better than 10.0: 1
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 370
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)