Query psy1721
Match_columns 74
No_of_seqs 107 out of 652
Neff 5.0
Searched_HMMs 46136
Date Sat Aug 17 00:41:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4029|consensus 99.7 8.9E-17 1.9E-21 114.1 4.2 51 1-51 121-172 (228)
2 KOG3960|consensus 99.5 3.2E-14 7E-19 105.2 5.8 49 2-51 131-179 (284)
3 KOG3898|consensus 99.4 4.2E-14 9.1E-19 103.1 3.1 51 1-51 84-134 (254)
4 PF00010 HLH: Helix-loop-helix 99.2 7E-11 1.5E-15 67.4 5.0 40 2-41 14-55 (55)
5 smart00353 HLH helix loop heli 99.2 1.4E-10 3.1E-15 65.0 5.9 44 2-45 9-52 (53)
6 cd00083 HLH Helix-loop-helix d 99.1 1.6E-10 3.5E-15 65.7 5.7 43 2-44 17-59 (60)
7 KOG4395|consensus 99.1 9.2E-11 2E-15 87.1 4.9 49 1-49 186-234 (285)
8 KOG4447|consensus 99.1 3.6E-11 7.8E-16 83.9 1.9 45 2-47 91-135 (173)
9 KOG0561|consensus 98.2 1.2E-06 2.5E-11 67.1 4.0 41 1-42 72-112 (373)
10 KOG1319|consensus 97.5 9.7E-05 2.1E-09 53.6 3.2 44 3-46 76-123 (229)
11 KOG4447|consensus 95.9 0.0023 4.9E-08 45.1 0.3 41 2-43 35-75 (173)
12 KOG4304|consensus 95.1 0.013 2.9E-07 43.1 1.8 43 3-45 46-93 (250)
13 KOG3910|consensus 94.7 0.036 7.9E-07 45.2 3.6 48 1-48 538-586 (632)
14 KOG2483|consensus 94.6 0.081 1.8E-06 38.8 4.8 46 3-48 73-118 (232)
15 PLN03217 transcription factor 94.0 0.14 3.1E-06 33.0 4.4 44 3-46 21-67 (93)
16 KOG2588|consensus 93.9 0.04 8.6E-07 47.2 2.3 47 3-51 290-336 (953)
17 KOG1318|consensus 91.4 0.38 8.2E-06 38.0 4.5 45 3-47 247-292 (411)
18 KOG3558|consensus 88.4 0.65 1.4E-05 39.2 3.8 43 5-49 62-106 (768)
19 KOG3561|consensus 82.1 2.6 5.7E-05 35.9 4.6 41 3-43 34-75 (803)
20 KOG3560|consensus 79.8 3.1 6.6E-05 34.8 4.1 52 3-54 39-94 (712)
21 PF15459 RRP14: 60S ribosome b 47.1 15 0.00032 21.9 1.6 16 2-17 5-20 (64)
22 COG3129 Predicted SAM-dependen 41.5 44 0.00095 25.5 3.7 18 34-51 58-75 (292)
23 PF13815 Dzip-like_N: Iguana/D 40.3 39 0.00084 21.7 2.9 24 24-47 57-81 (118)
24 PF12179 IKKbetaNEMObind: I-ka 40.2 24 0.00053 19.3 1.6 23 28-50 3-25 (38)
25 PF10392 COG5: Golgi transport 37.5 21 0.00046 23.3 1.4 38 1-39 81-128 (132)
26 PF02945 Endonuclease_7: Recom 34.3 38 0.00082 20.9 2.1 12 27-38 69-80 (81)
27 PF11408 Helicase_Sgs1: Sgs1 R 34.2 31 0.00067 21.5 1.7 15 1-15 2-16 (80)
28 PF04839 PSRP-3_Ycf65: Plastid 32.7 28 0.00061 20.1 1.2 38 5-42 10-47 (49)
29 KOG1164|consensus 32.4 63 0.0014 23.3 3.3 34 6-43 105-138 (322)
30 PF01267 F-actin_cap_A: F-acti 32.3 20 0.00044 26.5 0.7 25 3-27 238-263 (271)
31 COG1711 DNA replication initia 31.9 32 0.00069 25.4 1.7 43 8-50 3-47 (223)
32 PRK02724 hypothetical protein; 30.6 73 0.0016 21.0 3.0 38 5-42 44-81 (104)
33 PF15605 Toxin_52: Putative to 29.9 69 0.0015 21.1 2.8 44 1-44 49-101 (103)
34 cd07200 cPLA2_Grp-IVA Group IV 29.8 37 0.00081 27.6 1.9 27 5-35 462-488 (505)
35 KOG3559|consensus 29.7 49 0.0011 27.2 2.5 40 4-43 16-56 (598)
36 PF08493 AflR: Aflatoxin regul 27.6 2.1E+02 0.0046 21.5 5.4 44 4-47 158-212 (274)
37 PF08651 DASH_Duo1: DASH compl 26.8 1.6E+02 0.0034 18.0 3.9 14 2-15 11-24 (78)
38 CHL00163 ycf65 putative riboso 26.3 97 0.0021 20.2 3.0 38 5-42 39-76 (99)
39 KOG1299|consensus 25.9 78 0.0017 26.2 3.0 40 6-49 365-415 (549)
40 PF15200 KRTDAP: Keratinocyte 25.7 21 0.00045 22.3 -0.2 27 7-34 47-73 (77)
41 PF15157 IQ-like: IQ-like 25.0 58 0.0013 21.1 1.8 35 25-59 48-82 (97)
42 KOG1748|consensus 24.1 37 0.0008 23.1 0.8 22 21-42 107-128 (131)
43 smart00039 CRF corticotropin-r 23.7 27 0.00059 19.2 0.0 14 3-16 6-19 (40)
44 cd01437 parp_like Poly(ADP-rib 23.3 1.7E+02 0.0037 22.4 4.3 44 4-49 21-64 (347)
45 COG3755 Uncharacterized protei 23.0 54 0.0012 22.2 1.4 18 3-20 52-69 (127)
46 TIGR01225 hutH histidine ammon 22.4 1.5E+02 0.0033 24.1 4.0 35 4-47 458-492 (506)
47 KOG0248|consensus 22.2 1.1E+02 0.0023 26.8 3.2 45 25-69 882-927 (936)
48 PHA03102 Small T antigen; Revi 22.0 49 0.0011 22.7 1.1 17 1-17 46-62 (153)
49 PF10335 DUF294_C: Putative nu 21.7 1.3E+02 0.0029 19.6 3.1 25 22-46 117-143 (145)
No 1
>KOG4029|consensus
Probab=99.65 E-value=8.9e-17 Score=114.13 Aligned_cols=51 Identities=45% Similarity=0.596 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHhcCCCCCC-CCCccHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy1721 1 MRILSKAFFRLKTTLPWVPK-DTKLSKLDTLRLATSYILHLKMLLSQQQDDP 51 (74)
Q Consensus 1 m~~lN~Af~~LR~~lP~~~~-~kkLSKietLr~Ai~YI~~L~~~L~~~~~~~ 51 (74)
|+.||.||+.||.+||..|. ++|||||||||+|+.||.+|+++|+.+....
T Consensus 121 v~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 121 VQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred ccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 67899999999999999998 9999999999999999999999999988654
No 2
>KOG3960|consensus
Probab=99.50 E-value=3.2e-14 Score=105.23 Aligned_cols=49 Identities=31% Similarity=0.424 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy1721 2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDP 51 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~~~ 51 (74)
++||+|||.|++..-.. +++||+||||||.||.||+.||++|++..+..
T Consensus 131 kKVNEAFE~LKRrT~~N-PNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 131 KKVNEAFETLKRRTSSN-PNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHhhcCCC-ccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 68999999999999766 47899999999999999999999999877654
No 3
>KOG3898|consensus
Probab=99.45 E-value=4.2e-14 Score=103.12 Aligned_cols=51 Identities=35% Similarity=0.414 Sum_probs=48.3
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy1721 1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDP 51 (74)
Q Consensus 1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~~~ 51 (74)
||+||+|||.||++||+++.++|||||||||+|.+||..|+.++.......
T Consensus 84 MH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ls~~~~~ 134 (254)
T KOG3898|consen 84 MHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVLLSGIAPL 134 (254)
T ss_pred ccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccccccCCCcc
Confidence 899999999999999999999999999999999999999999998877764
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.16 E-value=7e-11 Score=67.37 Aligned_cols=40 Identities=33% Similarity=0.423 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHhcCCCC--CCCCCccHHHHHHHHHHHHHHHH
Q psy1721 2 RILSKAFFRLKTTLPWV--PKDTKLSKLDTLRLATSYILHLK 41 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~--~~~kkLSKietLr~Ai~YI~~L~ 41 (74)
..||++|+.|+..||.. +...|+||.+||+.|++||.+||
T Consensus 14 ~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 14 DRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 46999999999999984 36789999999999999999986
No 5
>smart00353 HLH helix loop helix domain.
Probab=99.15 E-value=1.4e-10 Score=65.04 Aligned_cols=44 Identities=43% Similarity=0.628 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLS 45 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~ 45 (74)
..+|++|+.|+..||..+.+.+++|..||..|++||..|+..++
T Consensus 9 ~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 9 RKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999987668999999999999999999998765
No 6
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.14 E-value=1.6e-10 Score=65.75 Aligned_cols=43 Identities=42% Similarity=0.589 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q psy1721 2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLL 44 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L 44 (74)
..+|.+|+.|+..||..+.+++++|+.+|..|++||..|+..+
T Consensus 17 ~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 17 ERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999777899999999999999999999865
No 7
>KOG4395|consensus
Probab=99.11 E-value=9.2e-11 Score=87.06 Aligned_cols=49 Identities=43% Similarity=0.527 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccCC
Q psy1721 1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQD 49 (74)
Q Consensus 1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~ 49 (74)
|+.||.|||.||.++|....++||||.|||+.|..||..|..+|+.+..
T Consensus 186 m~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~~ 234 (285)
T KOG4395|consen 186 MNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDLPMS 234 (285)
T ss_pred hhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcCccc
Confidence 7899999999999999998999999999999999999999999975544
No 8
>KOG4447|consensus
Probab=99.09 E-value=3.6e-11 Score=83.94 Aligned_cols=45 Identities=42% Similarity=0.649 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhcc
Q psy1721 2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQ 47 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~ 47 (74)
++||+||..||..+|+.|.+ |||||.||++|..||.+|.++|..+
T Consensus 91 qsLn~AF~~lr~iiptlPsd-klSkiqtLklA~ryidfl~~vl~s~ 135 (173)
T KOG4447|consen 91 QSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSD 135 (173)
T ss_pred hhHHHHHHHHHhhcCCCCcc-ccccccchhhcccCCchhhhccccc
Confidence 57999999999999999876 9999999999999999999999887
No 9
>KOG0561|consensus
Probab=98.24 E-value=1.2e-06 Score=67.06 Aligned_cols=41 Identities=32% Similarity=0.460 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHH
Q psy1721 1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKM 42 (74)
Q Consensus 1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~ 42 (74)
||.||.+|..||.+||.. .+.||||..||+....||-.|..
T Consensus 72 MQSINAGFqsLr~LlPr~-eGEKLSKAAILQQTa~yI~~Le~ 112 (373)
T KOG0561|consen 72 MQSINAGFQSLRALLPRK-EGEKLSKAAILQQTADYIHQLEG 112 (373)
T ss_pred HHhhhHHHHHHHHhcCcc-cchhhHHHHHHHHHHHHHHHHHh
Confidence 899999999999999986 46699999999999999998864
No 10
>KOG1319|consensus
Probab=97.49 E-value=9.7e-05 Score=53.58 Aligned_cols=44 Identities=25% Similarity=0.281 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCCC-C---CCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721 3 ILSKAFFRLKTTLPWV-P---KDTKLSKLDTLRLATSYILHLKMLLSQ 46 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~-~---~~kkLSKietLr~Ai~YI~~L~~~L~~ 46 (74)
.||.+++.|+.+||.- + ...||||.-||+.||.||.+|..-...
T Consensus 76 AIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~k 123 (229)
T KOG1319|consen 76 AIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKK 123 (229)
T ss_pred HHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999962 2 457999999999999999999764443
No 11
>KOG4447|consensus
Probab=95.94 E-value=0.0023 Score=45.10 Aligned_cols=41 Identities=37% Similarity=0.293 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Q psy1721 2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKML 43 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~ 43 (74)
+.+|+||+.|+..+|..|.+ +.+|+.||+.+..||..+.++
T Consensus 35 ~~ls~~s~l~g~l~pgspa~-gk~~~ktlr~~~~~~~~~dE~ 75 (173)
T KOG4447|consen 35 RRLSDASTLLGKLEPGSPAD-GKRGKKTLRIGTDSIQSLDEL 75 (173)
T ss_pred hhhhhhhhhccccCCCCCCc-ccccccccccCCCchhhHHHH
Confidence 46899999999999998765 789999999999999998874
No 12
>KOG4304|consensus
Probab=95.07 E-value=0.013 Score=43.09 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCCC-----CCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721 3 ILSKAFFRLKTTLPWVP-----KDTKLSKLDTLRLATSYILHLKMLLS 45 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~~-----~~kkLSKietLr~Ai~YI~~L~~~L~ 45 (74)
-||+.++.||.+||..- .-.||-|.|||.++.+|.+.|+..=.
T Consensus 46 RIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 46 RINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 48999999999999532 22789999999999999999987433
No 13
>KOG3910|consensus
Probab=94.75 E-value=0.036 Score=45.20 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=40.2
Q ss_pred CcHHHHHHHHHHhcCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHhccC
Q psy1721 1 MRILSKAFFRLKTTLPW-VPKDTKLSKLDTLRLATSYILHLKMLLSQQQ 48 (74)
Q Consensus 1 m~~lN~Af~~LR~~lP~-~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~ 48 (74)
+++||+||.+|-+..-. .-.+|.=+|+-||..|..-|..|.+-+++-.
T Consensus 538 VRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 538 VRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred hhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 58999999999775532 3468889999999999999999999887654
No 14
>KOG2483|consensus
Probab=94.59 E-value=0.081 Score=38.78 Aligned_cols=46 Identities=28% Similarity=0.313 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccC
Q psy1721 3 ILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQ 48 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~ 48 (74)
.|-+.|+.||..||..+.+++=.-+.+|+.|..||..|+.......
T Consensus 73 hlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~ 118 (232)
T KOG2483|consen 73 HLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQ 118 (232)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH
Confidence 3567899999999998766555589999999999999987655443
No 15
>PLN03217 transcription factor ATBS1; Provisional
Probab=93.95 E-value=0.14 Score=33.00 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCCC---CCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721 3 ILSKAFFRLKTTLPWVP---KDTKLSKLDTLRLATSYILHLKMLLSQ 46 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~~---~~kkLSKietLr~Ai~YI~~L~~~L~~ 46 (74)
+||+-..+|+..||... ...|.|--..|+.+.+||..|..-+++
T Consensus 21 qi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDd 67 (93)
T PLN03217 21 QINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDD 67 (93)
T ss_pred HHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999743 235778889999999999988765543
No 16
>KOG2588|consensus
Probab=93.94 E-value=0.04 Score=47.23 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy1721 3 ILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDP 51 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~~~ 51 (74)
+||+-...||+.+|.. +-|+.|-++||.||+||++|+......+.+.
T Consensus 290 SINDKI~eLk~lV~g~--~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~ 336 (953)
T KOG2588|consen 290 SINDKIIELKDLVPGT--EAKLNKSAVLRKAIDYIEDLQGYNQKLKLEN 336 (953)
T ss_pred chhHHHHHHHHhcCcc--HhhhhhhhhHHHHHHHHHHhhccccccchhh
Confidence 6899999999999975 4699999999999999999998766655543
No 17
>KOG1318|consensus
Probab=91.43 E-value=0.38 Score=38.05 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCCC-CCCCCccHHHHHHHHHHHHHHHHHHHhcc
Q psy1721 3 ILSKAFFRLKTTLPWV-PKDTKLSKLDTLRLATSYILHLKMLLSQQ 47 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~-~~~kkLSKietLr~Ai~YI~~L~~~L~~~ 47 (74)
.||+..-.|...||.. ..+-|+.|=-||..+..||..|++.++..
T Consensus 247 nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 247 NINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 6999999999999974 35778999999999999999999988743
No 18
>KOG3558|consensus
Probab=88.36 E-value=0.65 Score=39.21 Aligned_cols=43 Identities=28% Similarity=0.576 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCCCC--CCCccHHHHHHHHHHHHHHHHHHHhccCC
Q psy1721 5 SKAFFRLKTTLPWVPK--DTKLSKLDTLRLATSYILHLKMLLSQQQD 49 (74)
Q Consensus 5 N~Af~~LR~~lP~~~~--~kkLSKietLr~Ai~YI~~L~~~L~~~~~ 49 (74)
|+-|..|...|| .|. ...|-|+.++|+||.|.+ |.+++.....
T Consensus 62 n~~FyeLa~~lP-lp~aisshLDkaSimRLtISyLR-lrk~a~~g~~ 106 (768)
T KOG3558|consen 62 NEEFYELAKLLP-LPAAISSHLDKASIMRLTISYLR-LRKFAGAGDP 106 (768)
T ss_pred hHHHHHHHHhCC-CcchhhhhhhhHHHHHHHHHHHH-HHHHhhcCCc
Confidence 788999999999 453 578999999999999875 4555554433
No 19
>KOG3561|consensus
Probab=82.12 E-value=2.6 Score=35.92 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCCCC-CCCCccHHHHHHHHHHHHHHHHHH
Q psy1721 3 ILSKAFFRLKTTLPWVP-KDTKLSKLDTLRLATSYILHLKML 43 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~~-~~kkLSKietLr~Ai~YI~~L~~~ 43 (74)
++|.-.++|-..||... -.+|+=|..+||.|+..|+.+...
T Consensus 34 q~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 34 QMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred HHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 68999999999999843 479999999999999999888775
No 20
>KOG3560|consensus
Probab=79.81 E-value=3.1 Score=34.79 Aligned_cols=52 Identities=31% Similarity=0.486 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCCCCC-CCCccHHHHHHHHHHHHH---HHHHHHhccCCCCCCC
Q psy1721 3 ILSKAFFRLKTTLPWVPK-DTKLSKLDTLRLATSYIL---HLKMLLSQQQDDPSHT 54 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~~~-~kkLSKietLr~Ai~YI~---~L~~~L~~~~~~~~~~ 54 (74)
.||.-+|.|..+||..+. =-||-|+.+||++..|.+ +.+-+|......++..
T Consensus 39 RLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~KSfFqvvl~~s~~~~~gg 94 (712)
T KOG3560|consen 39 RLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRVKSFFQVVLHQSSRQPAGG 94 (712)
T ss_pred HhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhcCccccCCC
Confidence 589999999999996432 258889999999999975 6788888777765443
No 21
>PF15459 RRP14: 60S ribosome biogenesis protein Rrp14
Probab=47.14 E-value=15 Score=21.92 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHhcCCC
Q psy1721 2 RILSKAFFRLKTTLPW 17 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~ 17 (74)
+.=|.+||.|-++||.
T Consensus 5 ~~h~~~Fd~Ll~LIPA 20 (64)
T PF15459_consen 5 RAHSSFFDGLLSLIPA 20 (64)
T ss_pred HHHHHHHHHHHHhCCh
Confidence 3458999999999994
No 22
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=41.52 E-value=44 Score=25.51 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhccCCCC
Q psy1721 34 TSYILHLKMLLSQQQDDP 51 (74)
Q Consensus 34 i~YI~~L~~~L~~~~~~~ 51 (74)
..||.+|.++|.+.....
T Consensus 58 AdYih~laDLL~s~~g~~ 75 (292)
T COG3129 58 ADYIHHLADLLASTSGQI 75 (292)
T ss_pred hHHHHHHHHHHHhcCCCC
Confidence 899999999998776653
No 23
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=40.33 E-value=39 Score=21.70 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=19.8
Q ss_pred ccHH-HHHHHHHHHHHHHHHHHhcc
Q psy1721 24 LSKL-DTLRLATSYILHLKMLLSQQ 47 (74)
Q Consensus 24 LSKi-etLr~Ai~YI~~L~~~L~~~ 47 (74)
+-|+ ..+++++.|+.+.++.|...
T Consensus 57 ~~klfrLaQl~ieYLl~~q~~L~~~ 81 (118)
T PF13815_consen 57 FLKLFRLAQLSIEYLLHCQEYLSSQ 81 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355 88999999999999988764
No 24
>PF12179 IKKbetaNEMObind: I-kappa-kinase-beta NEMO binding domain; InterPro: IPR022007 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with PF00069 from PFAM. These proteins are involved in inflammatory reactions. They cause release of NF-kappa-B into the nucleus of inflammatory cells and upregulation of transcription of proinflammatory cytokines. They perform this function by phosphorylating I-kappa-B proteins which are targeted for degradation to release NF-kappa-B. This kinase (I-kappa-kinase-beta) is found in association with IKK-alpha and NEMO (NF-kappa-B essential modulator). This domain is the binding site of IKK-beta for NEMO. ; GO: 0008384 IkappaB kinase activity; PDB: 3BRT_C 3BRV_C.
Probab=40.17 E-value=24 Score=19.32 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC
Q psy1721 28 DTLRLATSYILHLKMLLSQQQDD 50 (74)
Q Consensus 28 etLr~Ai~YI~~L~~~L~~~~~~ 50 (74)
+.+..+-+|...|+.++++..++
T Consensus 3 ~lv~En~~~lsqL~s~mqdt~~E 25 (38)
T PF12179_consen 3 QLVEENQNYLSQLESLMQDTMKE 25 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999876554
No 25
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=37.46 E-value=21 Score=23.26 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHhcCCCCCCC------CCccHH----HHHHHHHHHHHH
Q psy1721 1 MRILSKAFFRLKTTLPWVPKD------TKLSKL----DTLRLATSYILH 39 (74)
Q Consensus 1 m~~lN~Af~~LR~~lP~~~~~------kkLSKi----etLr~Ai~YI~~ 39 (74)
++.||.+|++||..|= .|++ ..|.++ +.||.++.|+..
T Consensus 81 v~~L~~s~~RL~~eV~-~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~L 128 (132)
T PF10392_consen 81 VESLQSSYERLRSEVI-EPYEKIQKLTSQLERLHQTSDLLRSVSRFLQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999998883 3433 233333 455555555543
No 26
>PF02945 Endonuclease_7: Recombination endonuclease VII; InterPro: IPR004211 This family of proteins which includes Bacteriophage T4 endonuclease VII, Mycobacteriophage D29 gene 59, and other as yet uncharacterised proteins. The T4 endonuclease VII (Endo VII) recognises a broad spectrum of DNA substrates ranging from branched DNAs to single base mismatches. The structure of this enzyme has been resolved and it was found that the monomers form an elongated, intertwined molecular dimer that exibits extreme domain swapping. Two pairs of antiparallel helices which form a novel 'four-helix cross' motif are the major dimerisation elements [].; PDB: 3GOX_A 3FC3_A 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=34.32 E-value=38 Score=20.92 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q psy1721 27 LDTLRLATSYIL 38 (74)
Q Consensus 27 ietLr~Ai~YI~ 38 (74)
++.|+.|++|++
T Consensus 69 ~~~L~~a~~YLe 80 (81)
T PF02945_consen 69 PEFLRRAIDYLE 80 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 689999999985
No 27
>PF11408 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR022758 RecQ helicases unwind DNA in an ATP-dependent manner. Sgs1 has a HRDC (helicase and RNaseD C-terminal) domain which modulates the helicase function via auxiliary contacts to DNA []. The proteins matching this entry are restricted to fungi (Saccharomycetaceae). ; PDB: 1D8B_A.
Probab=34.17 E-value=31 Score=21.52 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=11.3
Q ss_pred CcHHHHHHHHHHhcC
Q psy1721 1 MRILSKAFFRLKTTL 15 (74)
Q Consensus 1 m~~lN~Af~~LR~~l 15 (74)
+..||.||+.||+.-
T Consensus 2 ~~~i~~aY~~Lr~~~ 16 (80)
T PF11408_consen 2 QRHITSAYEKLREIS 16 (80)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH
Confidence 357899999999865
No 28
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=32.69 E-value=28 Score=20.06 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHH
Q psy1721 5 SKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKM 42 (74)
Q Consensus 5 N~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~ 42 (74)
++|-+.||..|-+.|==..-.||++|-.|..-|++=|+
T Consensus 10 ~DAWe~lk~eLe~K~WIs~~e~i~lLN~~TeiIN~Wqe 47 (49)
T PF04839_consen 10 EDAWEQLKNELESKPWISEKERIELLNQATEIINYWQE 47 (49)
T ss_dssp S-HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 46888888888554433455788999999888877554
No 29
>KOG1164|consensus
Probab=32.36 E-value=63 Score=23.33 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Q psy1721 6 KAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKML 43 (74)
Q Consensus 6 ~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~ 43 (74)
.-++.||+..| .+++|+--.|+.|+.=|..|+.+
T Consensus 105 ~sL~dl~~~~~----~~~fs~~T~l~ia~q~l~~l~~l 138 (322)
T KOG1164|consen 105 PSLEDLRKRNP----PGRFSRKTVLRIAIQNLNALEDL 138 (322)
T ss_pred ccHHHHHHhCC----CCCcCHhHHHHHHHHHHHHHHHH
Confidence 34567777776 67999999999999999999853
No 30
>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....
Probab=32.28 E-value=20 Score=26.50 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=14.3
Q ss_pred HHHH-HHHHHHhcCCCCCCCCCccHH
Q psy1721 3 ILSK-AFFRLKTTLPWVPKDTKLSKL 27 (74)
Q Consensus 3 ~lN~-Af~~LR~~lP~~~~~kkLSKi 27 (74)
.||+ +|-.||+.||..-..-..-||
T Consensus 238 ~ls~~tFK~LRR~LPVTRsKi~W~ki 263 (271)
T PF01267_consen 238 NLSEKTFKALRRQLPVTRSKINWNKI 263 (271)
T ss_dssp HHHHTHHHHHS-SS-TTTSS-SHHHH
T ss_pred HhhHHHHHHhhhhCCCCCCccccccc
Confidence 4555 899999999975443333443
No 31
>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]
Probab=31.92 E-value=32 Score=25.39 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=33.8
Q ss_pred HHHHHhcCCCCCCCCCccHH--HHHHHHHHHHHHHHHHHhccCCC
Q psy1721 8 FFRLKTTLPWVPKDTKLSKL--DTLRLATSYILHLKMLLSQQQDD 50 (74)
Q Consensus 8 f~~LR~~lP~~~~~kkLSKi--etLr~Ai~YI~~L~~~L~~~~~~ 50 (74)
|+.||+.+-..-+..+|++| +.-+.+..||..|+..-......
T Consensus 3 i~eLR~~~~kErS~~~L~~Id~dFY~~v~~~I~eLe~~~~~~~~~ 47 (223)
T COG1711 3 IEELRRALYKERSQDGLTEIDEDFYRDVRSFIKELEDEAGRAEEA 47 (223)
T ss_pred HHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHhhccccc
Confidence 67888888554455688888 77899999999999987766654
No 32
>PRK02724 hypothetical protein; Provisional
Probab=30.61 E-value=73 Score=20.98 Aligned_cols=38 Identities=26% Similarity=0.148 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHH
Q psy1721 5 SKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKM 42 (74)
Q Consensus 5 N~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~ 42 (74)
++|-+.||..|-+.|==.+-.+|++|-.|..-|++=|+
T Consensus 44 ~DAWe~LK~~LesK~WIs~~~~i~lLN~~TeiIN~WQe 81 (104)
T PRK02724 44 NDAWEQLKTELESKHWITENERVEVLNKATEVINYWQE 81 (104)
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999665533455689999999999999988
No 33
>PF15605 Toxin_52: Putative toxin 52
Probab=29.89 E-value=69 Score=21.07 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=22.1
Q ss_pred CcHHHHHHHHHHhcCCCC---CCCCCccHH------HHHHHHHHHHHHHHHHH
Q psy1721 1 MRILSKAFFRLKTTLPWV---PKDTKLSKL------DTLRLATSYILHLKMLL 44 (74)
Q Consensus 1 m~~lN~Af~~LR~~lP~~---~~~kkLSKi------etLr~Ai~YI~~L~~~L 44 (74)
|+.|.+|+..|+++.-.. -.+-.||.. +-|..|..||....+++
T Consensus 49 lqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~~ 101 (103)
T PF15605_consen 49 LQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIEDFF 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777664211 012233321 33445566666665554
No 34
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVA cPLA2, an 85 kDa protein, consists of two domains: the regulatory C2 domain and the alpha/beta hydrolase PLA2 domain. Group IVA cPLA2 is also referred to as cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (cPLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile
Probab=29.80 E-value=37 Score=27.61 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCCCCCCCCccHHHHHHHHHH
Q psy1721 5 SKAFFRLKTTLPWVPKDTKLSKLDTLRLATS 35 (74)
Q Consensus 5 N~Af~~LR~~lP~~~~~kkLSKietLr~Ai~ 35 (74)
|+|||+|.++.-.. -|+-+|+++.|++
T Consensus 462 ~~~f~~l~~l~~~n----~~~~~~~i~~a~~ 488 (505)
T cd07200 462 NQAFDRLHELMEFN----TLNNIDVIKDAIR 488 (505)
T ss_pred HHHHHHHHHHHHHh----hhccHHHHHHHHH
Confidence 78999999987442 5788899988876
No 35
>KOG3559|consensus
Probab=29.70 E-value=49 Score=27.17 Aligned_cols=40 Identities=28% Similarity=0.466 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCCC-CCCCccHHHHHHHHHHHHHHHHHH
Q psy1721 4 LSKAFFRLKTTLPWVP-KDTKLSKLDTLRLATSYILHLKML 43 (74)
Q Consensus 4 lN~Af~~LR~~lP~~~-~~kkLSKietLr~Ai~YI~~L~~~ 43 (74)
=|--|-.|.+.||... -.-.|-|..++|++..||.+=.-.
T Consensus 16 EN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~vF 56 (598)
T KOG3559|consen 16 ENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNVF 56 (598)
T ss_pred hcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHhc
Confidence 4778999999999632 133499999999999999865443
No 36
>PF08493 AflR: Aflatoxin regulatory protein; InterPro: IPR013700 Aflatoxins belong to a family of decaketides that are produced as secondary metabolites by Aspergillus flavus and Aspergillus parasiticus []. The aflatoxin biosynthetic pathway involves several enzymatic steps that appear to be regulated by the aflR genes in A. flavus and A. parasiticus. AflR encodes a protein that contains a cysteine-rich motif. Several fungal transcriptional activator proteins contain this motif, which binds DNA in a zinc-dependent fashion (occurs in fungal transcriptional regulatory proteins) [, ]. This domain is found in the aflatoxin regulatory protein (AflR) which is involved in the regulation of the biosynthesis of aflatoxin in the fungal genus Aspergillus []. It occurs together with the fungal Zn(2)-Cys(6) binuclear cluster domain (IPR001138 from INTERPRO). This entry also includes Sterigmatocystin biosynthesis regulatory protein []. Sterigmatocystin is related to aflatoxin. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0045122 aflatoxin biosynthetic process, 0005634 nucleus
Probab=27.65 E-value=2.1e+02 Score=21.50 Aligned_cols=44 Identities=27% Similarity=0.307 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCC----------CCCCccHHH-HHHHHHHHHHHHHHHHhcc
Q psy1721 4 LSKAFFRLKTTLPWVP----------KDTKLSKLD-TLRLATSYILHLKMLLSQQ 47 (74)
Q Consensus 4 lN~Af~~LR~~lP~~~----------~~kkLSKie-tLr~Ai~YI~~L~~~L~~~ 47 (74)
+..|++.|+.+.|..+ ..-++..|| +|+.-...|+.+..+|+-.
T Consensus 158 ls~AL~lL~sLf~~s~s~C~~~~~~~~~~~~~tid~Vl~~Nr~ai~~v~~iL~C~ 212 (274)
T PF08493_consen 158 LSLALDLLKSLFPNSPSSCERPGSESSSSSLPTIDAVLSDNRQAIETVSTILQCS 212 (274)
T ss_pred HHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 6789999999987432 123677884 4777788899999999864
No 37
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=26.81 E-value=1.6e+02 Score=18.00 Aligned_cols=14 Identities=29% Similarity=0.244 Sum_probs=8.4
Q ss_pred cHHHHHHHHHHhcC
Q psy1721 2 RILSKAFFRLKTTL 15 (74)
Q Consensus 2 ~~lN~Af~~LR~~l 15 (74)
+.||.+|+.+-..|
T Consensus 11 r~IN~~ie~~~~~L 24 (78)
T PF08651_consen 11 RKINPVIEGLIETL 24 (78)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665554
No 38
>CHL00163 ycf65 putative ribosomal protein 3; Validated
Probab=26.30 E-value=97 Score=20.22 Aligned_cols=38 Identities=21% Similarity=0.137 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHH
Q psy1721 5 SKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKM 42 (74)
Q Consensus 5 N~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~ 42 (74)
++|-+.||..|-+.|==.+-.+|++|-.|..-|++=|+
T Consensus 39 ~DAWe~LK~~LesK~WIs~~~~i~lLN~~TeiIN~Wqe 76 (99)
T CHL00163 39 TDAWELLKLELESKPWISEDERIEILNKTTEIINYWQE 76 (99)
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47889999998665533355689999999999999988
No 39
>KOG1299|consensus
Probab=25.95 E-value=78 Score=26.22 Aligned_cols=40 Identities=33% Similarity=0.501 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCCCCCCccHHHHHHHHHHHH-----------HHHHHHHhccCC
Q psy1721 6 KAFFRLKTTLPWVPKDTKLSKLDTLRLATSYI-----------LHLKMLLSQQQD 49 (74)
Q Consensus 6 ~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI-----------~~L~~~L~~~~~ 49 (74)
.+|..++++| .+.+.|+++.||+++-|- ..|.++|.+.+.
T Consensus 365 ~~~~~i~~LL----~n~~vs~~d~lrLv~lYaLr~e~~~~~~~~~L~~~l~~~~~ 415 (549)
T KOG1299|consen 365 ADFNDIKKLL----QNEKVSEIDRLRLVALYALRYERHPPNELRQLPQILREQGP 415 (549)
T ss_pred hhHHHHHHHH----cCCcccHHHHHHHHHHHHHHhccCChHHHHHHHHHHHhcCC
Confidence 4788888888 356999999999999883 456666666655
No 40
>PF15200 KRTDAP: Keratinocyte differentiation-associated
Probab=25.74 E-value=21 Score=22.33 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=20.4
Q ss_pred HHHHHHhcCCCCCCCCCccHHHHHHHHH
Q psy1721 7 AFFRLKTTLPWVPKDTKLSKLDTLRLAT 34 (74)
Q Consensus 7 Af~~LR~~lP~~~~~kkLSKietLr~Ai 34 (74)
-||.+++.+|...=+ -++|+.-||.|+
T Consensus 47 lfe~iK~kLPFlNWd-afPKlKGlRSa~ 73 (77)
T PF15200_consen 47 LFEAIKRKLPFLNWD-AFPKLKGLRSAT 73 (77)
T ss_pred HHHHHHHhCcccchh-hhhhhccccccC
Confidence 478999999976433 678888887764
No 41
>PF15157 IQ-like: IQ-like
Probab=24.99 E-value=58 Score=21.10 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccc
Q psy1721 25 SKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQW 59 (74)
Q Consensus 25 SKietLr~Ai~YI~~L~~~L~~~~~~~~~~~~~~~ 59 (74)
|||.+++.|+.--..=++.++.....+....++.+
T Consensus 48 skvkiiqrawre~lq~qd~~~krspsPps~ssdkl 82 (97)
T PF15157_consen 48 SKVKIIQRAWREYLQRQDPLEKRSPSPPSLSSDKL 82 (97)
T ss_pred HHHHHHHHHHHHHHHhcCCccccCCCCCCcchhhh
Confidence 89999999987544445566655555444443333
No 42
>KOG1748|consensus
Probab=24.10 E-value=37 Score=23.14 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=17.7
Q ss_pred CCCccHHHHHHHHHHHHHHHHH
Q psy1721 21 DTKLSKLDTLRLATSYILHLKM 42 (74)
Q Consensus 21 ~kkLSKietLr~Ai~YI~~L~~ 42 (74)
+.+=-||.|.+.|+.||..+-+
T Consensus 107 d~dAdki~t~~da~~yI~~~~d 128 (131)
T KOG1748|consen 107 DEDADKIKTVRDAADYIADKPD 128 (131)
T ss_pred cchhhhhCCHHHHHHHHHhccc
Confidence 4566799999999999987543
No 43
>smart00039 CRF corticotropin-releasing factor.
Probab=23.72 E-value=27 Score=19.24 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcCC
Q psy1721 3 ILSKAFFRLKTTLP 16 (74)
Q Consensus 3 ~lN~Af~~LR~~lP 16 (74)
+|+-+||.||+.+-
T Consensus 6 SIdl~~~vLR~~l~ 19 (40)
T smart00039 6 SIDLTFDLLRQRLE 19 (40)
T ss_pred ccccHHHHHHHHHH
Confidence 46778888888763
No 44
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=23.33 E-value=1.7e+02 Score=22.44 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccCC
Q psy1721 4 LSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQD 49 (74)
Q Consensus 4 lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~ 49 (74)
++.|...+.--+...|-+ |||| +++..|..=...|+++|++...
T Consensus 21 ~~~~m~e~~~D~~kmPLG-kLSk-~qI~~g~~vL~~i~~~l~~~~~ 64 (347)
T cd01437 21 MKKAMTELKIDASKMPLG-KLSK-NQIQKGYEVLKEIEEALKRGSS 64 (347)
T ss_pred HHHHHHHcCCCcccCCCc-ccCH-HHHHHHHHHHHHHHHHHhcccc
Confidence 445555555455555544 9999 8888899989999999987665
No 45
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.99 E-value=54 Score=22.15 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCCCCCC
Q psy1721 3 ILSKAFFRLKTTLPWVPK 20 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~~~ 20 (74)
.||.||..|...++..|.
T Consensus 52 ~LN~AY~~ll~~l~~~~~ 69 (127)
T COG3755 52 ELNKAYKALLKRLQDSPR 69 (127)
T ss_pred HHHHHHHHHHHHhccChH
Confidence 699999999999987554
No 46
>TIGR01225 hutH histidine ammonia-lyase. This enzyme deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase.
Probab=22.44 E-value=1.5e+02 Score=24.05 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhcc
Q psy1721 4 LSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQ 47 (74)
Q Consensus 4 lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~ 47 (74)
.-.+|+.+|+.+|....++-++. .|+.+.++|.+.
T Consensus 458 ~~~~~~~vR~~vp~~~~DR~~~~---------dI~~~~~~l~~~ 492 (506)
T TIGR01225 458 LEKAYQAVRSVVAPLDGDRFFAP---------DIEAARDLVAKG 492 (506)
T ss_pred HHHHHHHHHHhCCCCcCCCCcHH---------HHHHHHHHHHcC
Confidence 34678999999999888887765 566666666543
No 47
>KOG0248|consensus
Probab=22.18 E-value=1.1e+02 Score=26.82 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=33.4
Q ss_pred cHHHHHH-HHHHHHHHHHHHHhccCCCCCCCcccccccccceeecC
Q psy1721 25 SKLDTLR-LATSYILHLKMLLSQQQDDPSHTHKEQWTQVLNVRFDR 69 (74)
Q Consensus 25 SKietLr-~Ai~YI~~L~~~L~~~~~~~~~~~~~~~~~~wp~~~~~ 69 (74)
+||+-+. .-..||+|.+.+......+++-...+...++.|+-+.+
T Consensus 882 PKI~E~Tl~~ASYiNHcqk~v~~~~~aPallsaqtrgGsQpllSsS 927 (936)
T KOG0248|consen 882 PKIEELTLHLASYINHCQKLVWKVSKAPALLSAQTRGGSQPLLSSS 927 (936)
T ss_pred chHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhcCCCccccccc
Confidence 6884333 23479999999999999988887766777777776543
No 48
>PHA03102 Small T antigen; Reviewed
Probab=22.04 E-value=49 Score=22.74 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=14.1
Q ss_pred CcHHHHHHHHHHhcCCC
Q psy1721 1 MRILSKAFFRLKTTLPW 17 (74)
Q Consensus 1 m~~lN~Af~~LR~~lP~ 17 (74)
|+.||+||+.|.+-+..
T Consensus 46 ~k~in~Ay~~L~d~~~r 62 (153)
T PHA03102 46 MKELNTLYKKFRESVKS 62 (153)
T ss_pred HHHHHHHHHHHhhHHHh
Confidence 57899999999987754
No 49
>PF10335 DUF294_C: Putative nucleotidyltransferase substrate binding domain; InterPro: IPR018821 This entry is found associated with presumed nucleotidyltransferase domains and seems to be distantly related to other helical substrate binding domains.
Probab=21.68 E-value=1.3e+02 Score=19.62 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=22.3
Q ss_pred CCccHH--HHHHHHHHHHHHHHHHHhc
Q psy1721 22 TKLSKL--DTLRLATSYILHLKMLLSQ 46 (74)
Q Consensus 22 kkLSKi--etLr~Ai~YI~~L~~~L~~ 46 (74)
..||+. +.||.|..-|..||+.|..
T Consensus 117 ~~Ls~~er~~Lk~al~~i~~lq~~l~~ 143 (145)
T PF10335_consen 117 DELSKLERRRLKEALRVIKRLQRLLRR 143 (145)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999 7999999999999998864
Done!