Query psy1721
Match_columns 74
No_of_seqs 107 out of 652
Neff 5.0
Searched_HMMs 29240
Date Sat Aug 17 00:41:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aya_A DNA-binding protein inh 99.9 1.4E-22 4.9E-27 130.0 6.4 55 1-55 37-91 (97)
2 2ql2_B Neurod1, neurogenic dif 99.8 1.3E-21 4.5E-26 115.5 5.4 47 1-47 14-60 (60)
3 2lfh_A DNA-binding protein inh 99.8 5E-21 1.7E-25 116.2 5.9 42 1-42 26-67 (68)
4 1mdy_A Protein (MYOD BHLH doma 99.8 5.4E-20 1.8E-24 111.0 4.7 45 1-46 24-68 (68)
5 3u5v_A Protein MAX, transcript 99.5 2.2E-14 7.6E-19 87.8 3.6 54 2-55 18-72 (76)
6 1hlo_A Protein (transcription 99.3 1.4E-12 4.8E-17 79.4 4.3 44 2-46 25-68 (80)
7 1nkp_A C-MYC, MYC proto-oncoge 99.3 4.7E-12 1.6E-16 78.9 4.9 44 2-45 19-62 (88)
8 1nkp_B MAX protein, MYC proto- 99.3 4.8E-12 1.7E-16 77.2 4.4 44 2-46 15-58 (83)
9 1nlw_A MAD protein, MAX dimeri 99.2 2.6E-11 9E-16 74.5 5.6 44 2-45 14-57 (80)
10 1an4_A Protein (upstream stimu 98.9 2.1E-10 7.1E-15 67.1 1.7 41 2-42 18-61 (65)
11 1a0a_A BHLH, protein (phosphat 98.9 1.9E-10 6.5E-15 67.9 0.8 43 2-44 15-61 (63)
12 1am9_A Srebp-1A, protein (ster 98.9 1.8E-09 6.1E-14 66.1 5.1 43 2-46 19-61 (82)
13 4h10_B Circadian locomoter out 98.7 2.2E-08 7.6E-13 60.6 6.0 41 3-45 22-62 (71)
14 4ati_A MITF, microphthalmia-as 98.7 4.1E-08 1.4E-12 63.7 5.8 46 3-48 41-87 (118)
15 4h10_A ARYL hydrocarbon recept 98.6 1.7E-08 5.8E-13 61.1 2.8 41 3-43 23-64 (73)
16 4f3l_A Mclock, circadian locom 97.9 1.8E-05 6.1E-10 57.2 5.8 41 3-45 26-66 (361)
17 4ath_A MITF, microphthalmia-as 97.9 3.2E-05 1.1E-09 48.0 5.9 43 3-45 6-49 (83)
18 4f3l_B BMAL1B; BHLH, PAS, circ 97.4 9.4E-05 3.2E-09 54.2 2.9 39 3-41 27-66 (387)
19 3muj_A Transcription factor CO 96.2 0.0086 3E-07 40.1 5.2 39 3-41 95-134 (138)
20 3mlp_A Transcription factor CO 89.0 0.068 2.3E-06 40.9 -0.2 37 4-40 322-359 (402)
21 1pd7_B MAD1; PAH2, SIN3, eukar 66.2 4.9 0.00017 19.7 2.2 20 23-42 1-20 (26)
22 1iur_A KIAA0730 protein; DNAJ 60.2 5.1 0.00017 23.8 2.0 18 2-19 61-78 (88)
23 1faf_A Large T antigen; J doma 46.3 7.2 0.00024 22.5 1.0 15 1-15 52-66 (79)
24 1q5z_A SIPA, SIPA; cell invasi 45.3 9.8 0.00034 25.6 1.7 33 4-36 71-119 (177)
25 1bde_A VPR protein; AIDS, HIV, 32.1 53 0.0018 16.9 2.9 18 28-45 4-21 (35)
26 2dn9_A DNAJ homolog subfamily 31.0 16 0.00056 20.3 0.9 12 2-13 51-62 (79)
27 1gh6_A Large T antigen; tumor 31.0 24 0.00082 21.8 1.7 15 1-15 49-63 (114)
28 2dmx_A DNAJ homolog subfamily 29.9 18 0.0006 20.9 0.9 13 2-14 54-66 (92)
29 2ctr_A DNAJ homolog subfamily 29.7 18 0.00061 20.8 0.9 12 2-13 50-61 (88)
30 2ej7_A HCG3 gene; HCG3 protein 29.1 15 0.00052 20.6 0.5 12 2-13 54-65 (82)
31 2cug_A Mkiaa0962 protein; DNAJ 28.6 19 0.00065 20.7 0.9 12 2-13 60-71 (88)
32 2ctp_A DNAJ homolog subfamily 28.0 18 0.00061 20.2 0.7 12 2-13 50-61 (78)
33 2o37_A Protein SIS1; HSP40, J- 26.0 20 0.00069 20.8 0.7 31 2-48 49-79 (92)
34 1d8b_A SGS1 RECQ helicase; fiv 25.5 38 0.0013 20.4 1.8 14 2-15 3-16 (81)
35 1wjz_A 1700030A21RIK protein; 24.9 20 0.00069 20.6 0.5 12 2-13 66-77 (94)
36 3brv_A Inhibitor of nuclear fa 24.8 43 0.0015 18.2 1.8 23 28-50 10-32 (48)
37 1vf6_A PALS-1, PALS1-associate 24.0 19 0.00064 22.0 0.3 40 6-45 7-51 (83)
38 2och_A Hypothetical protein DN 23.7 24 0.00082 19.4 0.7 12 2-13 49-60 (73)
39 1hdj_A Human HSP40, HDJ-1; mol 23.6 18 0.00061 20.1 0.1 12 2-13 46-57 (77)
40 2qsa_A DNAJ homolog DNJ-2; J-d 22.4 29 0.00098 20.6 0.9 12 2-13 63-74 (109)
41 2lgw_A DNAJ homolog subfamily 22.3 29 0.00099 20.6 0.9 13 2-14 47-59 (99)
42 1tm9_A GI3844938, hypothetical 21.9 55 0.0019 21.1 2.2 18 25-42 59-76 (137)
43 3unv_A ADMH; MIO, lyase; HET: 21.5 1.6E+02 0.0054 23.1 5.1 43 4-55 501-543 (547)
44 3va9_A Sensor histidine kinase 21.5 51 0.0017 20.7 2.0 42 3-46 59-101 (164)
45 2ctw_A DNAJ homolog subfamily 20.7 29 0.00098 20.8 0.6 12 2-13 61-72 (109)
46 2yua_A Williams-beuren syndrom 20.2 24 0.00081 20.8 0.2 12 2-13 61-72 (99)
No 1
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=129.99 Aligned_cols=55 Identities=24% Similarity=0.469 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q psy1721 1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH 55 (74)
Q Consensus 1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~~~~~~~ 55 (74)
|+.||+||+.||++||+.|+++|||||||||+||+||.+|+++|++.+.....+.
T Consensus 37 m~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~~~~~ 91 (97)
T 4aya_A 37 LYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPSFLVQ 91 (97)
T ss_dssp HHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTTCC--
T ss_pred HHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCcchhh
Confidence 6889999999999999999999999999999999999999999999988876664
No 2
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.84 E-value=1.3e-21 Score=115.51 Aligned_cols=47 Identities=40% Similarity=0.552 Sum_probs=44.3
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhcc
Q psy1721 1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQ 47 (74)
Q Consensus 1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~ 47 (74)
|+.||+||+.||.+||..|.++|||||+||+.|++||.+|+++|+++
T Consensus 14 ~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~g 60 (60)
T 2ql2_B 14 MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSG 60 (60)
T ss_dssp HHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999764
No 3
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.83 E-value=5e-21 Score=116.23 Aligned_cols=42 Identities=31% Similarity=0.613 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHH
Q psy1721 1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKM 42 (74)
Q Consensus 1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~ 42 (74)
|+.||+||+.||++||+.|+++|||||||||+||+||.+||.
T Consensus 26 m~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 26 LDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp SSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 789999999999999999999999999999999999999985
No 4
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.79 E-value=5.4e-20 Score=111.01 Aligned_cols=45 Identities=33% Similarity=0.476 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721 1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ 46 (74)
Q Consensus 1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~ 46 (74)
|+.||+||+.||.+||..| ++|||||+||+.|++||.+|+++|++
T Consensus 24 ~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~~ 68 (68)
T 1mdy_A 24 LSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLRD 68 (68)
T ss_dssp HHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 5789999999999999865 78999999999999999999999874
No 5
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.47 E-value=2.2e-14 Score=87.83 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHhcCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q psy1721 2 RILSKAFFRLKTTLPW-VPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH 55 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~-~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~~~~~~~ 55 (74)
..||++|+.||..||. .+.++++||++||+.|++||..|++.+++....+-..|
T Consensus 18 ~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~~~~~~ 72 (76)
T 3u5v_A 18 RDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPLNHH 72 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCTTC--
T ss_pred HHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 5799999999999994 66777789999999999999999999998877764443
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.31 E-value=1.4e-12 Score=79.39 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721 2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ 46 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~ 46 (74)
..||.+|+.||.+||..+ +.|+||++||+.|++||.+|+..++.
T Consensus 25 ~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~ 68 (80)
T 1hlo_A 25 DHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHT 68 (80)
T ss_dssp HHHHHHHHHHHHHSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCC-CCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999875 45899999999999999999987654
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.27 E-value=4.7e-12 Score=78.89 Aligned_cols=44 Identities=30% Similarity=0.480 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLS 45 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~ 45 (74)
..||++|+.||..||..+.+.|+||+.||+.|+.||..|+....
T Consensus 19 ~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~ 62 (88)
T 1nkp_A 19 NELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ 62 (88)
T ss_dssp HHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999998888999999999999999999997643
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.26 E-value=4.8e-12 Score=77.24 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721 2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ 46 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~ 46 (74)
..||++|+.||..||..+ +.|+||++||+.|++||.+|+...+.
T Consensus 15 ~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~ 58 (83)
T 1nkp_B 15 DHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHT 58 (83)
T ss_dssp HHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999865 56899999999999999999975543
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.20 E-value=2.6e-11 Score=74.48 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLS 45 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~ 45 (74)
..||.+|+.||..||..+.+.|+||++||+.|++||..|++--.
T Consensus 14 ~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~ 57 (80)
T 1nlw_A 14 AHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57 (80)
T ss_dssp HHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999998888999999999999999999987543
No 10
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=98.94 E-value=2.1e-10 Score=67.13 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHhcCCCCCCC---CCccHHHHHHHHHHHHHHHHH
Q psy1721 2 RILSKAFFRLKTTLPWVPKD---TKLSKLDTLRLATSYILHLKM 42 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~~~---kkLSKietLr~Ai~YI~~L~~ 42 (74)
..||++|+.|+..||..... .|+||.+||..|++||..|+.
T Consensus 18 ~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~ 61 (65)
T 1an4_A 18 DKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ 61 (65)
T ss_dssp HHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 36999999999999986543 589999999999999999986
No 11
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=98.91 E-value=1.9e-10 Score=67.86 Aligned_cols=43 Identities=28% Similarity=0.223 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHhcCCCCC----CCCCccHHHHHHHHHHHHHHHHHHH
Q psy1721 2 RILSKAFFRLKTTLPWVP----KDTKLSKLDTLRLATSYILHLKMLL 44 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~----~~kkLSKietLr~Ai~YI~~L~~~L 44 (74)
..||.+|+.|+..||... ++.++||.+||..|++||..|++-+
T Consensus 15 ~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 15 NRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp HHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 369999999999999632 2589999999999999999998643
No 12
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=98.91 E-value=1.8e-09 Score=66.15 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721 2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ 46 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~ 46 (74)
..||++|+.|+..||. .+.|++|.+||..|+.||.+|+..++.
T Consensus 19 ~~in~~f~~L~~lvP~--~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~ 61 (82)
T 1am9_A 19 SSINDKIIELKDLVVG--TEAKLNKSAVLRKAIDYIRFLQHSNQK 61 (82)
T ss_dssp HHHHHHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999997 357999999999999999999987654
No 13
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.75 E-value=2.2e-08 Score=60.59 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721 3 ILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLS 45 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~ 45 (74)
.||+.|..|+..||. ...|++|..||+.|+.||..|+..+.
T Consensus 22 ~IN~~i~eL~~LvP~--~~~K~dK~sIL~~aI~yik~Lq~~~~ 62 (71)
T 4h10_B 22 QFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKEITA 62 (71)
T ss_dssp HHHHHHHHHHTTSSS--CCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 589999999999994 45799999999999999999998764
No 14
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=98.66 E-value=4.1e-08 Score=63.74 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCCCC-CCCCccHHHHHHHHHHHHHHHHHHHhccC
Q psy1721 3 ILSKAFFRLKTTLPWVP-KDTKLSKLDTLRLATSYILHLKMLLSQQQ 48 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~~-~~kkLSKietLr~Ai~YI~~L~~~L~~~~ 48 (74)
.||+.|..|+..||... .+.|++|..||..|+.||.+|+...+...
T Consensus 41 ~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~ 87 (118)
T 4ati_A 41 NINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK 87 (118)
T ss_dssp HHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999753 46799999999999999999987665443
No 15
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.62 E-value=1.7e-08 Score=61.14 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCCC-CCCCCccHHHHHHHHHHHHHHHHHH
Q psy1721 3 ILSKAFFRLKTTLPWV-PKDTKLSKLDTLRLATSYILHLKML 43 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~-~~~kkLSKietLr~Ai~YI~~L~~~ 43 (74)
.||+.|+.|+..||.. ....|++|.+||+.|+.||..|+..
T Consensus 23 rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 23 KMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp HHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 6899999999999953 3468999999999999999998754
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.91 E-value=1.8e-05 Score=57.24 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721 3 ILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLS 45 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~ 45 (74)
.+|..|..|+..|| ....||.|..+|++|+.||..++.+-.
T Consensus 26 ~~n~~~~~l~~~~p--~~~~~~dk~~il~~~~~~~~~~~~~~~ 66 (361)
T 4f3l_A 26 QFNVLIKELGSMLP--GNARKMDKSTVLQKSIDFLRKHKETTA 66 (361)
T ss_dssp HHHHHHHHHHHTCC--SSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC--CCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence 68999999999999 346799999999999999999987643
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.89 E-value=3.2e-05 Score=48.04 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCCC-CCCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721 3 ILSKAFFRLKTTLPWV-PKDTKLSKLDTLRLATSYILHLKMLLS 45 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~-~~~kkLSKietLr~Ai~YI~~L~~~L~ 45 (74)
+||+.+..|...||.. .++.|.+|=.||+.|++||.+|++-.+
T Consensus 6 nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~ 49 (83)
T 4ath_A 6 NINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 49 (83)
T ss_dssp HHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHH
T ss_pred hHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999974 357899999999999999999987443
No 18
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.36 E-value=9.4e-05 Score=54.18 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCCCC-CCCCccHHHHHHHHHHHHHHHH
Q psy1721 3 ILSKAFFRLKTTLPWVP-KDTKLSKLDTLRLATSYILHLK 41 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~~-~~kkLSKietLr~Ai~YI~~L~ 41 (74)
.+|..|..|+..||... ...||.|..+|++|+.||..|+
T Consensus 27 ~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~ 66 (387)
T 4f3l_B 27 KMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 66 (387)
T ss_dssp HHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence 58999999999999632 4579999999999999999987
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=96.23 E-value=0.0086 Score=40.10 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCCCC-CCCccHHHHHHHHHHHHHHHH
Q psy1721 3 ILSKAFFRLKTTLPWVPK-DTKLSKLDTLRLATSYILHLK 41 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~~~-~kkLSKietLr~Ai~YI~~L~ 41 (74)
.|+-+|++|.+.+|..|. -.||.|--+|+.|.++.+.|-
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~ 134 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY 134 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence 478899999999999885 479999999999999988774
No 20
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=89.05 E-value=0.068 Score=40.87 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCCCCC-CCCccHHHHHHHHHHHHHHH
Q psy1721 4 LSKAFFRLKTTLPWVPK-DTKLSKLDTLRLATSYILHL 40 (74)
Q Consensus 4 lN~Af~~LR~~lP~~~~-~kkLSKietLr~Ai~YI~~L 40 (74)
|+-+|++|.+.+|..|. -.+|+|--+|+.|.++.+.|
T Consensus 322 IdygfqRLqK~iPrhpGdpErLpKevilkRaadl~eal 359 (402)
T 3mlp_A 322 IDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEAL 359 (402)
T ss_dssp TTTTTTTTTTC-----------CHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHh
Confidence 45689999999999875 37999999999999988877
No 21
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=66.18 E-value=4.9 Score=19.70 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=16.7
Q ss_pred CccHHHHHHHHHHHHHHHHH
Q psy1721 23 KLSKLDTLRLATSYILHLKM 42 (74)
Q Consensus 23 kLSKietLr~Ai~YI~~L~~ 42 (74)
++.+|+.|-.|.+|++...+
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 46789999999999987665
No 22
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=60.16 E-value=5.1 Score=23.82 Aligned_cols=18 Identities=17% Similarity=0.088 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHhcCCCCC
Q psy1721 2 RILSKAFFRLKTTLPWVP 19 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~ 19 (74)
+.||+||+.|....+..+
T Consensus 61 ~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 61 KHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp HHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHhhccccc
Confidence 568888888888876544
No 23
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=46.29 E-value=7.2 Score=22.46 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=11.5
Q ss_pred CcHHHHHHHHHHhcC
Q psy1721 1 MRILSKAFFRLKTTL 15 (74)
Q Consensus 1 m~~lN~Af~~LR~~l 15 (74)
++.||+||+.|+..+
T Consensus 52 f~~i~~AYe~L~~~~ 66 (79)
T 1faf_A 52 MQELNSLWGTFKTEV 66 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHH
Confidence 357899999998743
No 24
>1q5z_A SIPA, SIPA; cell invasion; 1.80A {Salmonella typhimurium} SCOP: a.196.1.1
Probab=45.33 E-value=9.8 Score=25.59 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcC-CCCC--------------CC-CCccHHHHHHHHHHH
Q psy1721 4 LSKAFFRLKTTL-PWVP--------------KD-TKLSKLDTLRLATSY 36 (74)
Q Consensus 4 lN~Af~~LR~~l-P~~~--------------~~-kkLSKietLr~Ai~Y 36 (74)
+..|||.||.-| |... .. .---|||||+.+|..
T Consensus 71 vrrafd~lraeil~nd~iks~alkaqcsdi~~~~elk~kidtlke~it~ 119 (177)
T 1q5z_A 71 VRRAFDGLRAEILPNDTIKSAALKAQCSDIDKHPELKAKMETLKEVITH 119 (177)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhhhhhhcCCchHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhc
Confidence 678999999755 4210 00 011478888888753
No 25
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=32.08 E-value=53 Score=16.94 Aligned_cols=18 Identities=33% Similarity=0.209 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy1721 28 DTLRLATSYILHLKMLLS 45 (74)
Q Consensus 28 etLr~Ai~YI~~L~~~L~ 45 (74)
||+.-+-..|..||++|-
T Consensus 4 DTw~GveaiiriLQq~Lf 21 (35)
T 1bde_A 4 DTWAGVEAIIRILQQLLF 21 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 677788888999998873
No 26
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.00 E-value=16 Score=20.33 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=9.4
Q ss_pred cHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKT 13 (74)
Q Consensus 2 ~~lN~Af~~LR~ 13 (74)
+.||+||+.|..
T Consensus 51 ~~i~~Ay~~L~d 62 (79)
T 2dn9_A 51 SQLAEAYEVLSD 62 (79)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHCC
Confidence 568889988864
No 27
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=30.97 E-value=24 Score=21.78 Aligned_cols=15 Identities=7% Similarity=0.372 Sum_probs=11.5
Q ss_pred CcHHHHHHHHHHhcC
Q psy1721 1 MRILSKAFFRLKTTL 15 (74)
Q Consensus 1 m~~lN~Af~~LR~~l 15 (74)
++.||+|++.|..-.
T Consensus 49 f~~I~~AYevL~d~~ 63 (114)
T 1gh6_A 49 MKKMNTLYKKMEDGV 63 (114)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHH
Confidence 468999999997543
No 28
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.85 E-value=18 Score=20.92 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=9.8
Q ss_pred cHHHHHHHHHHhc
Q psy1721 2 RILSKAFFRLKTT 14 (74)
Q Consensus 2 ~~lN~Af~~LR~~ 14 (74)
+.||+||+.|..-
T Consensus 54 ~~i~~Ay~~L~d~ 66 (92)
T 2dmx_A 54 KLVSEAYEVLSDS 66 (92)
T ss_dssp HHHHHHHHHHHSH
T ss_pred HHHHHHHHHHCCH
Confidence 4688899888753
No 29
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.67 E-value=18 Score=20.83 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=10.0
Q ss_pred cHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKT 13 (74)
Q Consensus 2 ~~lN~Af~~LR~ 13 (74)
+.||+||+.|..
T Consensus 50 ~~i~~Ay~~L~d 61 (88)
T 2ctr_A 50 REIAEAYETLSD 61 (88)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHCC
Confidence 578999999975
No 30
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.05 E-value=15 Score=20.62 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=9.6
Q ss_pred cHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKT 13 (74)
Q Consensus 2 ~~lN~Af~~LR~ 13 (74)
+.||+||+.|..
T Consensus 54 ~~i~~Ay~~L~d 65 (82)
T 2ej7_A 54 KQVAEAYEVLSD 65 (82)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHHCC
Confidence 568999999864
No 31
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=28.57 E-value=19 Score=20.69 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=9.5
Q ss_pred cHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKT 13 (74)
Q Consensus 2 ~~lN~Af~~LR~ 13 (74)
+.||+||+.|..
T Consensus 60 ~~i~~Ay~~L~d 71 (88)
T 2cug_A 60 IQISKAYEILSN 71 (88)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHCC
Confidence 568899998864
No 32
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.96 E-value=18 Score=20.18 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=9.2
Q ss_pred cHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKT 13 (74)
Q Consensus 2 ~~lN~Af~~LR~ 13 (74)
+.||+||+.|..
T Consensus 50 ~~i~~Ay~~L~d 61 (78)
T 2ctp_A 50 KAIGTAYAVLSN 61 (78)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHCC
Confidence 468888888864
No 33
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=25.97 E-value=20 Score=20.80 Aligned_cols=31 Identities=16% Similarity=-0.015 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccC
Q psy1721 2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQ 48 (74)
Q Consensus 2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~ 48 (74)
+.||+||+.|..- ..-..|-......+....
T Consensus 49 ~~i~~Ay~~L~d~----------------~~R~~YD~~~~~~~~~~~ 79 (92)
T 2o37_A 49 KEISEAFEILNDP----------------QKREIYDQYGLEAARSGG 79 (92)
T ss_dssp HHHHHHHHHHTSH----------------HHHHHHHHHCHHHHHTTC
T ss_pred HHHHHHHHHHCCH----------------HHHHHHHHHCHHHhhccC
Confidence 5789999998752 112346666666666543
No 34
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=25.50 E-value=38 Score=20.44 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=11.3
Q ss_pred cHHHHHHHHHHhcC
Q psy1721 2 RILSKAFFRLKTTL 15 (74)
Q Consensus 2 ~~lN~Af~~LR~~l 15 (74)
..|+.||++||+.-
T Consensus 3 ~~l~~ay~~Lr~~~ 16 (81)
T 1d8b_A 3 NNLRMTYERLRELS 16 (81)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 46899999999753
No 35
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=24.87 E-value=20 Score=20.57 Aligned_cols=12 Identities=17% Similarity=0.097 Sum_probs=9.5
Q ss_pred cHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKT 13 (74)
Q Consensus 2 ~~lN~Af~~LR~ 13 (74)
+.||+||+.|..
T Consensus 66 ~~i~~Ay~~L~d 77 (94)
T 1wjz_A 66 IEIDQAWKILGN 77 (94)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHHCC
Confidence 468999999864
No 36
>3brv_A Inhibitor of nuclear factor kappa-B kinase subuni; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Synthetic} PDB: 3brt_A
Probab=24.81 E-value=43 Score=18.23 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC
Q psy1721 28 DTLRLATSYILHLKMLLSQQQDD 50 (74)
Q Consensus 28 etLr~Ai~YI~~L~~~L~~~~~~ 50 (74)
+.+..+.+|...|+.++++..+.
T Consensus 10 ~lleEn~~~~~~L~sliqdt~~e 32 (48)
T 3brv_A 10 ELVAEAHNLCTLLENAIQDTVRE 32 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999987764
No 37
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=24.02 E-value=19 Score=22.00 Aligned_cols=40 Identities=30% Similarity=0.376 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCC---CCCCCCccHH-HHHHHHH-HHHHHHHHHHh
Q psy1721 6 KAFFRLKTTLPW---VPKDTKLSKL-DTLRLAT-SYILHLKMLLS 45 (74)
Q Consensus 6 ~Af~~LR~~lP~---~~~~kkLSKi-etLr~Ai-~YI~~L~~~L~ 45 (74)
.|.|+|+..|-. .+.+.|||++ ++|+... +-|..||.-++
T Consensus 7 q~leRLQ~KL~erGd~s~~ekLs~lk~~LqSPLF~qILtlQqSik 51 (83)
T 1vf6_A 7 QVLDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIK 51 (83)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHhHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 567777777742 4466789888 7887654 33555555444
No 38
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=23.74 E-value=24 Score=19.42 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=9.1
Q ss_pred cHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKT 13 (74)
Q Consensus 2 ~~lN~Af~~LR~ 13 (74)
+.||+||+.|..
T Consensus 49 ~~i~~Ay~~L~d 60 (73)
T 2och_A 49 KQISQAYEVLSD 60 (73)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHCC
Confidence 468889888853
No 39
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=23.65 E-value=18 Score=20.12 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=8.9
Q ss_pred cHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKT 13 (74)
Q Consensus 2 ~~lN~Af~~LR~ 13 (74)
+.||+||+.|..
T Consensus 46 ~~i~~Ay~~L~d 57 (77)
T 1hdj_A 46 KEIAEAYDVLSD 57 (77)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC
Confidence 468888888754
No 40
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=22.37 E-value=29 Score=20.63 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=9.6
Q ss_pred cHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKT 13 (74)
Q Consensus 2 ~~lN~Af~~LR~ 13 (74)
+.||+|++.|..
T Consensus 63 ~~i~~AY~~L~d 74 (109)
T 2qsa_A 63 RVIATAYETLKD 74 (109)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHCC
Confidence 578999999864
No 41
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=22.29 E-value=29 Score=20.60 Aligned_cols=13 Identities=15% Similarity=0.255 Sum_probs=9.9
Q ss_pred cHHHHHHHHHHhc
Q psy1721 2 RILSKAFFRLKTT 14 (74)
Q Consensus 2 ~~lN~Af~~LR~~ 14 (74)
+.||+||+.|..-
T Consensus 47 ~~I~~AY~vL~d~ 59 (99)
T 2lgw_A 47 KEVAEAYEVLSDK 59 (99)
T ss_dssp HHHHHHHHHHHSH
T ss_pred HHHHHHHHHHCCH
Confidence 4688999988653
No 42
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Probab=21.95 E-value=55 Score=21.11 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHHHHHHHH
Q psy1721 25 SKLDTLRLATSYILHLKM 42 (74)
Q Consensus 25 SKietLr~Ai~YI~~L~~ 42 (74)
-.+|++++|++-|..|+.
T Consensus 59 ~q~ei~k~ai~niktlss 76 (137)
T 1tm9_A 59 QQIEITKIAVNNIKTLSS 76 (137)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHhhhhhHhh
Confidence 468999999999999875
No 43
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Probab=21.51 E-value=1.6e+02 Score=23.15 Aligned_cols=43 Identities=19% Similarity=0.362 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q psy1721 4 LSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH 55 (74)
Q Consensus 4 lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~~~~~~~ 55 (74)
+-.+|+.+|+.+|.+..++-|+ ..|+...++|.+..-+.-..|
T Consensus 501 ~~~~~~~vR~~Vp~~~~DR~l~---------~dI~~~~~~i~~~~~~~~~~~ 543 (547)
T 3unv_A 501 TRALYDKTRTLVPYLEEDKTIS---------DYIESIAQTVLTKNSDILEHH 543 (547)
T ss_dssp HHHHHHHHHTTSCCCSSCCCCH---------HHHHHHHHHTSCSCTTC----
T ss_pred HHHHHHHHHHhCCCccCCCCCh---------HHHHHHHHHHHcCCcchhhhc
Confidence 4578899999999988888884 468888888887766654443
No 44
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=21.47 E-value=51 Score=20.70 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCCCCC-CCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721 3 ILSKAFFRLKTTLPWVPK-DTKLSKLDTLRLATSYILHLKMLLSQ 46 (74)
Q Consensus 3 ~lN~Af~~LR~~lP~~~~-~kkLSKietLr~Ai~YI~~L~~~L~~ 46 (74)
.+..+|+.|+..+...|. .++|.+++.+ +-.|+..+..++.-
T Consensus 59 ~~~~~l~~L~~l~~dnp~Q~~~l~~l~~~--~~~~~~~~~~~i~l 101 (164)
T 3va9_A 59 ALAARLDGLRAVLADNPEQIAHIDELRLL--TDMRMAQLGRVVEL 101 (164)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 578899999999987663 3455555444 33466666665543
No 45
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.73 E-value=29 Score=20.84 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=9.6
Q ss_pred cHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKT 13 (74)
Q Consensus 2 ~~lN~Af~~LR~ 13 (74)
+.||+|++.|..
T Consensus 61 ~~i~~Ay~vL~d 72 (109)
T 2ctw_A 61 KEINNAHAILTD 72 (109)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC
Confidence 578999999864
No 46
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.18 E-value=24 Score=20.77 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=8.9
Q ss_pred cHHHHHHHHHHh
Q psy1721 2 RILSKAFFRLKT 13 (74)
Q Consensus 2 ~~lN~Af~~LR~ 13 (74)
+.||+||+.|..
T Consensus 61 ~~i~~Ay~~L~d 72 (99)
T 2yua_A 61 TRISQAYVVLGS 72 (99)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHCC
Confidence 468888888753
Done!