RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1721
         (74 letters)



>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 37.6 bits (87), Expect = 8e-06
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 4  LSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ 58
          L  +  +LK  +P  P  ++ + L  L  A  +I  L+    +         +EQ
Sbjct: 16 LRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQ 70


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 36.8 bits (85), Expect = 2e-05
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 1  MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ 58
             L ++FF L+  +P +  + K  K+  L+ AT+YIL ++    +   +     K +
Sbjct: 18 RNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRR 75


>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 34.7 bits (80), Expect = 7e-05
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 1  MRILSKAFFRLKTTLPWV---PKDTKLSKLDTLRLATSYILHLK 41
             ++    +L   +P        +  SK   L  A+ YI  L+
Sbjct: 17 RDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60


>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 68

 Score = 34.8 bits (80), Expect = 8e-05
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 1  MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ 46
          +  +++AF  LK +    P + +L K++ LR A  YI  L+ LL  
Sbjct: 24 LSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLRD 68


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 83

 Score = 33.7 bits (77), Expect = 3e-04
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 1  MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ 58
             +  +F  L+ ++P +    K S+   L  AT YI +++      Q D     ++ 
Sbjct: 14 RDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN 70


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 31.0 bits (70), Expect = 0.002
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 1  MRILSKAFFRLKTTLPWVPK----DTKLSKLDTLRLATSYILHLK 41
             L+ A   L + +P   K        SK  T+  A  YI HL+
Sbjct: 14 RNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQ 58


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 24.1 bits (52), Expect = 0.96
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 4  LSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDD 50
          ++     LK  +       KL+K   LR A  YI  L+    + + +
Sbjct: 21 INDKIIELKDLVVGTEA--KLNKSAVLRKAIDYIRFLQHSNQKLKQE 65


>d1j7na2 d.92.1.14 (A:551-773) Anthrax toxin lethal factor, N- and
          C-terminal domains {Bacillus anthracis [TaxId: 1392]}
          Length = 223

 Score = 24.5 bits (53), Expect = 1.2
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 18 VPKDTKLSKLDTLRLATSYILH 39
          +PK TKL   +      S I+ 
Sbjct: 26 LPKYTKLITFNVHNRYASNIVE 47


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 23.6 bits (51), Expect = 3.2
 Identities = 3/17 (17%), Positives = 5/17 (29%)

Query: 7   AFFRLKTTLPWVPKDTK 23
              RL+   P      +
Sbjct: 506 TLMRLRARHPKFASAAR 522


>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 72

 Score = 22.3 bits (48), Expect = 4.1
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 18 VPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDP 51
          VPK  +LS  +   L   Y L    L   Q+ DP
Sbjct: 7  VPKHIRLSSDEKRELLKRYRLKESQLPRIQRADP 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 251,042
Number of extensions: 7864
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 11
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)