BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17210
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 74/110 (67%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
MRTVTNY+LVNL+ A+ MA FN V NF Y +++ W +G YCK + F V AS+++
Sbjct: 63 MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122
Query: 61 LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTK 110
+ A++ DRYMAI+ PLQ R S T ++ + VIW+ + LLA P +STT+
Sbjct: 123 MTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQGYYSTTE 172
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS++T
Sbjct: 72 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWT 131
Query: 61 LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
L I++DRY AI P +++S ++ KAR+ ++++W+ SGL + LP +H
Sbjct: 132 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 180
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 72 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 131
Query: 61 LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
L I++DRY AI P +++S ++ KAR+ ++++W+ SGL + LP +H
Sbjct: 132 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 180
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 71 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 130
Query: 61 LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
L I++DRY AI P +++S ++ KAR+ ++++W+ SGL + LP +H
Sbjct: 131 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 179
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 41 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 100
Query: 61 LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
L I++DRY AI P +++S ++ KAR+ ++++W+ SGL + LP +H
Sbjct: 101 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 149
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 64 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 123
Query: 61 LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
L I++DRY AI P +++S ++ KAR+ ++++W+ SGL + LP +H
Sbjct: 124 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 172
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 213 LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET 272
Query: 61 LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
L I++DRY AI P +++S ++ KAR+ ++++W+ SGL + LP +H
Sbjct: 273 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 321
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 65 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 124
Query: 61 LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
L I++DRY AI P +++S ++ KAR+ ++++W+ SGL + LP +H
Sbjct: 125 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 173
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 36 LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET 95
Query: 61 LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
L I++DRY AI P +++S ++ KAR+ ++++W+ SGL + LP +H
Sbjct: 96 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 144
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
M+T TN Y+ NL+LAD +A F + L WPFG I CK+ I + S+FT
Sbjct: 48 MKTATNIYIFNLALADA-LATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFT 106
Query: 61 LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVLHSTTKIKNGDL 116
L +S+DRY+A+ P++ RT A+I V W+ S + LP + +TTK + G +
Sbjct: 107 LCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSI 164
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F +L W FG +C+ I + V AS+ T
Sbjct: 40 LQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWTSIDVLCVTASIET 99
Query: 61 LVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLA-LPCVLH 106
L I++DRY AI P +++S ++ KAR+ ++++W+ SGL + LP +H
Sbjct: 100 LCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 148
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 71.2 bits (173), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
M+T TN Y+ NL+LAD + + F +L WPFG CK I + S FT
Sbjct: 156 MKTATNIYIFNLALADT-LVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFT 214
Query: 61 LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVLHSTTKIKNGDL-- 116
L A+S+DRY+AI P++ RT KA+ V IW + ++ +P + + ++++ ++
Sbjct: 215 LTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIEC 274
Query: 117 -------AGQWITSFTLCSTLY 131
W F +C L+
Sbjct: 275 LVEIPTPQDYWGPVFAICIFLF 296
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
M+T TN Y+ NL+LAD + + +Y++ S WPFG++ CK+ I + S+FT
Sbjct: 53 MKTATNIYIFNLALADALVTTTMPFQSTVYLMNS-WPFGDVLCKIVLSIDYYNMFTSIFT 111
Query: 61 LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVLHSTTKIKN 113
L +S+DRY+A+ P++ RT KA+I + IWL S + + ++ TK++
Sbjct: 112 LTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVRE 166
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++T TN Y+ NL+LAD +A F L WPFGE+ CK I + S+FT
Sbjct: 45 LKTATNIYIFNLALADA-LATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFT 103
Query: 61 LVAISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALPCVLHSTTKIKNG 114
L +S+DRY+A+ P++ RT A+ L + IW+ + + +P ++ + T+ ++G
Sbjct: 104 LTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTQPRDG 159
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++TV NY+L++L+ ADL + V + Y++ + W G + C + I + ASV
Sbjct: 43 LKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMN 102
Query: 61 LVAISLDRYMAIMKPLQHRSSRTKARISLVV--IWLASGLLALPCVL 105
L+ IS DRY +I +PL +R+ RT R +++ W+ S +L P +L
Sbjct: 103 LLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAIL 149
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++TV NY+L +L+ ADL + VF+ +Y + +WP G + C + + + ASV
Sbjct: 54 LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMN 113
Query: 61 LVAISLDRYMAIMKPLQHRSSRTK--ARISLVVIWLASGLLALPCVL 105
L+ IS DRY + KPL + RT A + + W+ S +L P +L
Sbjct: 114 LLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAIL 160
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
+ TV N Y+V+LS+ADL + N +Y+L S W G C + + AS+F+
Sbjct: 39 LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFS 98
Query: 61 LVAISLDRYMAIMKPLQHRSSRTKARISLVVI--WLASGLLALP 102
+ + +DRY ++ +PL++ RTK R S ++ W S L +P
Sbjct: 99 VFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIP 142
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++T+TN ++ +L+ ADL + + F ++ W +G C++ + + V AS+ T
Sbjct: 42 LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 61 LVAISLDRYMAIMKPLQHRSSRTKARISLVV--IWLASGLLA-LPCVLH 106
L I++DRY+AI P +++S T+AR +++ +W S L++ LP ++H
Sbjct: 102 LCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMH 150
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++T+TN ++ +L+ ADL + + F ++ W +G C++ + + V AS+ T
Sbjct: 42 LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 61 LVAISLDRYMAIMKPLQHRSSRTKARISLVV--IWLASGLLA-LPCVLH 106
L I++DRY+AI P +++S T+AR +++ +W S L++ LP ++H
Sbjct: 102 LCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMH 150
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 25 VFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS--SR 82
++NFI+ ++ W FG+ C+ YF+ + A+ + ++S+ RY+AI P + ++ SR
Sbjct: 93 LYNFIW-VHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSR 151
Query: 83 TKARISLVVIWLASGLLALPCVLHSTTKIKNGD 115
++ + + IWLAS LLA+P + + ++ D
Sbjct: 152 SRTKKFISAIWLASALLAIPMLFTMGLQNRSAD 184
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEIYCKVNYFITNITVAASVF 59
+RT NY L+NL++ADLFM VF +Y L+ ++ FG C + F + +++
Sbjct: 69 LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 127
Query: 60 TLVAISLDRYMAIMKPLQH-RSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
+LV ++++RY+ + KP+ + R A + + W+ + A P ++ + I G
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG 183
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEIYCKVNYFITNITVAASVF 59
+RT NY L+NL++ADLFM VF +Y L+ ++ FG C + F + +++
Sbjct: 69 LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 127
Query: 60 TLVAISLDRYMAIMKPLQH-RSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
+LV ++++RY+ + KP+ + R A + + W+ + A P ++ + I G
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG 183
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEIYCKVNYFITNITVAASVF 59
+RT NY L+NL++ADLFM VF +Y L+ ++ FG C + F + +++
Sbjct: 68 LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 126
Query: 60 TLVAISLDRYMAIMKPLQH-RSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
+LV ++++RY+ + KP+ + R A + + W+ + A P ++ + I G
Sbjct: 127 SLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG 182
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEIYCKVNYFITNITVAASVF 59
+RT NY L+NL++ADLFM VF +Y L+ ++ FG C + F + +++
Sbjct: 69 LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLGGEIALW 127
Query: 60 TLVAISLDRYMAIMKPLQH-RSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
+LV ++++RY+ + KP+ + R A + + W+ + A P ++ + I G
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG 183
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEIYCKVNYFITNITVAASVF 59
+RT NY L+NL++ADLFM VF +Y L+ ++ FG C + F + +++
Sbjct: 69 LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 127
Query: 60 TLVAISLDRYMAIMKPLQH-RSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
+LV ++++RY+ + KP+ + R A + + W+ + A P ++ + I G
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG 183
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEIYCKVNYFITNITVAASVF 59
+RT NY L+NL++ADLFM VF +Y L+ ++ FG C + F + +++
Sbjct: 68 LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 126
Query: 60 TLVAISLDRYMAIMKPLQH-RSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
+LV ++++RY+ + KP+ + R A + + W+ + A P ++ + I G
Sbjct: 127 SLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG 182
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYS----HWPFGEIYCKVNYFITNITVAA 56
++T N +++NL+ +D F+ V F M S W FG CKV FI I
Sbjct: 65 LQTPANMFIINLAFSDF---TFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFM 121
Query: 57 SVFTLVAISLDRYMAIMKPL--QHRSSRTKARISLVVIWLASGLLAL 101
S+ T+ IS+DRY I +P+ + S +A I ++ +WL S L A+
Sbjct: 122 SIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAI 168
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYS----HWPFGEIYCKVNYFITNITVAA 56
++T N +++NL+ +D F+ V F M S W FG CKV FI I
Sbjct: 64 LQTPANMFIINLAFSDF---TFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFM 120
Query: 57 SVFTLVAISLDRYMAIMKPL--QHRSSRTKARISLVVIWLASGLLAL 101
S+ T+ IS+DRY I +P+ + S +A I ++ +WL S L A+
Sbjct: 121 SIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAI 167
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
+R++T+ Y ++LS+ADL V F + + ++W FG CK + I + + +SV+
Sbjct: 79 LRSMTDKYRLHLSVADLLF-VITLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWI 136
Query: 61 LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALP 102
L ISLDRY+AI+ + R ++ V +W+ + LL +P
Sbjct: 137 LAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIP 180
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
+R++T+ Y ++LS+ADL V F + + ++W FG CK + I + + +SV+
Sbjct: 79 LRSMTDKYRLHLSVADLLF-VITLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWI 136
Query: 61 LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALP 102
L ISLDRY+AI+ + R ++ V +W+ + LL +P
Sbjct: 137 LAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIP 180
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
+R++T+ Y ++LS+ADL V F + + ++W FG CK + I + + +SV+
Sbjct: 79 LRSMTDKYRLHLSVADLLF-VITLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWI 136
Query: 61 LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALP 102
L ISLDRY+AI+ + R ++ V +W+ + LL +P
Sbjct: 137 LAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIP 180
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLY---SHWPFGEIYCKVNYFITNITVAAS 57
++T TNY +V+L++ADL +A V ++ L W F I C V + + AS
Sbjct: 69 LQTTTNYLVVSLAVADLLVATL--VMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTAS 126
Query: 58 VFTLVAISLDRYMAIMKPL--QHRSSRTKAR---ISLVVIWLASGLLALP 102
++ L AIS+DRY A++ P+ QH + ++ R + + +W+ + ++ P
Sbjct: 127 IWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCP 176
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 8 YLVNLSLAD-LFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNI---TVAASVFTLVA 63
Y+++L+ AD LF++V ++ Y S W FG C+ F+T + AS+ +
Sbjct: 58 YMLHLATADVLFVSVLPFKISY-YFSGSDWQFGSELCR---FVTAAFYCNMYASILLMTV 113
Query: 64 ISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALPCVLHSTT 109
IS+DR++A++ P+Q S RT R S + IW + +P +L T
Sbjct: 114 ISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQT 161
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEIYCKVNYFITNITVAASVF 59
++ VTNY++V+ + AD+ + V F I + G ++ + F+ +T A+S+F
Sbjct: 37 LQNVTNYFVVSAAAADILVGVLAIPFAIAISTGFCAACHGCLF--IACFVLVLT-ASSIF 93
Query: 60 TLVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLALPCVL--HSTTKIKNGD 115
+L+AI++DRY+AI PL++ + T+A+ + + W+ S + L +L ++ + K G
Sbjct: 94 SLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGK 153
Query: 116 LAGQ 119
Q
Sbjct: 154 AHSQ 157
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEIYCKVNYFITNITVAASVF 59
++ VTNY++V+L+ AD+ + V F I + G ++ + F+ +T +S+F
Sbjct: 37 LQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLF--IACFVLVLT-QSSIF 93
Query: 60 TLVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLALPCVL--HSTTKIKNGD 115
+L+AI++DRY+AI PL++ + T+A+ + + W+ S + L +L ++ + K G
Sbjct: 94 SLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGK 153
Query: 116 LAGQ 119
Q
Sbjct: 154 QHSQ 157
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEIYCKVNYFITNITVAASVF 59
++ VTNY++V+L+ AD+ + V F I + G ++ + F+ +T +S+F
Sbjct: 62 LQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLF--IACFVLVLT-QSSIF 118
Query: 60 TLVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLAL 101
+L+AI++DRY+AI PL++ + T+A+ + + W+ S + L
Sbjct: 119 SLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGL 162
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEIYCKVNYFITNITVAASVF 59
++ VTNY++V+L+ AD+ + V F I + G ++ + F+ +T +S+F
Sbjct: 52 LQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLF--IACFVLVLT-QSSIF 108
Query: 60 TLVAISLDRYMAIMKPLQHRS--SRTKARISLVVIWLASGLLAL 101
+L+AI++DRY+AI PL++ + T+A+ + + W+ S + L
Sbjct: 109 SLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGL 152
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEIYCKVNYFITNITVAASVF 59
++ VTNY++V+L+ AD+ + V F I + G ++ + F+ + +S+F
Sbjct: 37 LQNVTNYFVVSLAAADILVGVLAIPFAITISTGFCAACHGCLF--IACFVL-VLAQSSIF 93
Query: 60 TLVAISLDRYMAIMKPLQHRSSRTKARISLVV 91
+L+AI++DRY+AI PL++ T R + ++
Sbjct: 94 SLLAIAIDRYIAIAIPLRYNGLVTGTRAAGII 125
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 36 WPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIM 73
W FG CKV + + + + L IS+DRY+AI+
Sbjct: 75 WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIV 112
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 52 ITVAASVFTLVAISLDRYMAIMKPLQHRSS 81
+ ++ASVF+L+AI+++RY+ ++K H S
Sbjct: 144 VALSASVFSLLAIAIERYITMLKMKLHNGS 173
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 56 ASVFTLVAISLDRYMAIMKPLQHRSSRTKAR 86
+S+ L AISLDRY +I + +++ RT R
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 56 ASVFTLVAISLDRYMAIMKPLQHRSSRTKAR 86
+S+ L AISLDRY +I + +++ RT R
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 17 LFMAVFNCVFNFIYMLYSHWPFG 39
+F + NC+ +F Y +HW F
Sbjct: 19 VFAIIKNCILSFKYQSPNHWEFA 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.138 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,338,947
Number of Sequences: 62578
Number of extensions: 102565
Number of successful extensions: 272
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 60
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 46 (22.3 bits)