Query psy17210
Match_columns 132
No_of_seqs 119 out of 1293
Neff 10.0
Searched_HMMs 46136
Date Sat Aug 17 00:42:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.9 3.5E-23 7.6E-28 146.9 8.5 114 1-114 66-179 (423)
2 PHA03234 DNA packaging protein 99.8 1.6E-20 3.5E-25 134.4 8.7 108 1-110 65-172 (338)
3 PHA02834 chemokine receptor-li 99.8 3.3E-19 7.1E-24 127.0 9.8 106 2-109 59-165 (323)
4 KOG4220|consensus 99.8 2.5E-20 5.4E-25 132.9 2.4 110 1-110 61-172 (503)
5 PF00001 7tm_1: 7 transmembran 99.8 5E-19 1.1E-23 120.3 8.6 113 1-113 15-129 (257)
6 PHA02638 CC chemokine receptor 99.7 2.3E-17 5E-22 121.1 11.2 107 1-109 128-236 (417)
7 PHA03087 G protein-coupled che 99.7 3E-17 6.5E-22 117.3 9.6 109 1-110 70-180 (335)
8 PHA03235 DNA packaging protein 99.7 4.5E-17 9.7E-22 119.3 9.8 101 3-107 67-170 (409)
9 KOG2087|consensus 99.3 1.2E-11 2.5E-16 87.7 7.9 111 3-113 57-176 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.2 7.5E-11 1.6E-15 81.8 6.6 88 1-90 21-108 (257)
11 PF10328 7TM_GPCR_Srx: Serpent 99.0 1.7E-09 3.6E-14 75.7 8.2 122 1-122 24-148 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 98.5 1.1E-06 2.3E-11 62.7 8.8 110 1-110 26-149 (318)
13 PF10323 7TM_GPCR_Srv: Serpent 98.4 5E-07 1.1E-11 63.6 4.5 114 1-114 29-149 (283)
14 PF11710 Git3: G protein-coupl 98.3 3.1E-05 6.8E-10 52.0 10.9 71 5-75 36-106 (201)
15 PF05462 Dicty_CAR: Slime mold 97.6 0.00053 1.2E-08 48.9 8.5 100 1-106 37-136 (303)
16 PF03402 V1R: Vomeronasal orga 97.4 0.00047 1E-08 48.2 5.8 98 2-102 8-112 (265)
17 PF10316 7TM_GPCR_Srbc: Serpen 96.4 0.022 4.7E-07 40.1 7.2 78 7-84 42-122 (273)
18 PF10321 7TM_GPCR_Srt: Serpent 95.7 0.11 2.4E-06 37.4 8.0 84 2-90 64-155 (313)
19 PF05296 TAS2R: Mammalian tast 95.6 0.081 1.8E-06 37.8 7.0 100 3-102 42-147 (303)
20 PF10292 7TM_GPCR_Srab: Serpen 95.5 0.24 5.1E-06 35.7 9.4 84 2-85 48-138 (324)
21 PF00002 7tm_2: 7 transmembran 95.3 0.0046 1E-07 42.3 0.0 104 1-107 31-134 (242)
22 PF03383 Serpentine_r_xa: Caen 95.0 0.021 4.6E-07 36.6 2.4 98 8-105 6-108 (153)
23 PF02118 Srg: Srg family chemo 95.0 0.091 2E-06 36.6 5.7 60 41-100 79-139 (275)
24 PF02175 7TM_GPCR_Srb: Serpent 92.6 0.35 7.6E-06 33.3 4.8 45 40-84 82-126 (236)
25 PF10317 7TM_GPCR_Srd: Serpent 92.2 1.7 3.7E-05 30.8 8.2 93 5-101 34-137 (292)
26 PF02117 7TM_GPCR_Sra: Serpent 86.0 9.7 0.00021 27.7 8.3 42 38-79 96-137 (328)
27 PF04789 DUF621: Protein of un 81.1 10 0.00022 27.1 6.4 104 4-110 48-159 (305)
28 PF02101 Ocular_alb: Ocular al 75.1 31 0.00067 25.9 7.6 95 7-105 69-174 (405)
29 PF10318 7TM_GPCR_Srh: Serpent 74.5 19 0.00041 25.4 6.5 94 12-105 50-147 (302)
30 KOG4193|consensus 63.5 35 0.00075 27.3 6.3 63 42-105 385-447 (610)
31 PF03125 Sre: C. elegans Sre G 52.2 61 0.0013 23.9 5.7 35 49-83 129-163 (365)
32 PF06681 DUF1182: Protein of u 41.9 1.1E+02 0.0025 21.0 6.3 37 39-75 113-149 (226)
33 PF02076 STE3: Pheromone A rec 40.9 1.3E+02 0.0029 21.5 8.4 66 40-106 56-125 (283)
34 PF10327 7TM_GPCR_Sri: Serpent 36.5 1.5E+02 0.0032 21.3 5.6 79 10-89 52-136 (303)
35 PF10326 7TM_GPCR_Str: Serpent 36.4 13 0.00028 26.4 0.2 34 46-79 85-118 (307)
36 KOG3609|consensus 36.3 2.6E+02 0.0056 23.5 7.6 76 24-101 323-401 (822)
37 PF01534 Frizzled: Frizzled/Sm 33.6 1.9E+02 0.0042 21.2 6.4 73 39-111 90-162 (328)
38 PF10322 7TM_GPCR_Sru: Serpent 23.4 1.9E+02 0.0041 21.0 4.3 62 44-105 104-166 (307)
No 1
>KOG4219|consensus
Probab=99.89 E-value=3.5e-23 Score=146.87 Aligned_cols=114 Identities=53% Similarity=0.849 Sum_probs=106.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS 80 (132)
Q Consensus 1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~ 80 (132)
||+-+|+|+.|||++|+..+++..+......+..+|.+|...|++..|+......+|++++++||+|||.||.||++.+.
T Consensus 66 MRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r~ 145 (423)
T KOG4219|consen 66 MRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPRP 145 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccCC
Confidence 68999999999999999999999999887778889999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhehhhhHHHhHHHHHHHHHhhceeeCC
Q psy17210 81 SRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114 (132)
Q Consensus 81 ~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~~ 114 (132)
++|.++.++++||+.+++.+.|..+..+.+...+
T Consensus 146 s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~ 179 (423)
T KOG4219|consen 146 SRRSSKIIILLIWALALLLALPQLLYSSVEELYL 179 (423)
T ss_pred CCcceeehhHHHHHHHHHHhccceeeeeeEEeec
Confidence 9999999999999999999999998877774444
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.83 E-value=1.6e-20 Score=134.40 Aligned_cols=108 Identities=20% Similarity=0.394 Sum_probs=88.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS 80 (132)
Q Consensus 1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~ 80 (132)
+|+++|+|+.|||++|++.++. .|..... ...+|.+|+..|++..++......+|++++++||+|||.+|++|.+++.
T Consensus 65 ~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~-~~~~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~ 142 (338)
T PHA03234 65 KHNATSFYLITLFASDFLHMLC-VFFLTLN-REALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK 142 (338)
T ss_pred cccHHHHHHHHHHHHHHHHHHH-HHHHHHH-HhCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh
Confidence 4789999999999999999864 4554443 3457999999999999999999999999999999999999999987654
Q ss_pred ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210 81 SRTKARISLVVIWLASGLLALPCVLHSTTK 110 (132)
Q Consensus 81 ~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~ 110 (132)
++++.+..++++|+.+++.++|+....+..
T Consensus 143 ~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~ 172 (338)
T PHA03234 143 KNNHIGRNIGILFLASAMCAIPAALFVKTE 172 (338)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhHhHeeeee
Confidence 333444455667999999999998765433
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.80 E-value=3.3e-19 Score=127.01 Aligned_cols=106 Identities=26% Similarity=0.510 Sum_probs=87.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc-
Q psy17210 2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS- 80 (132)
Q Consensus 2 ~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~- 80 (132)
++++|+++.|||++|++. ....|..+.... ++|..|+..|++..+....+..+|++++++||+|||.+|++|+++++
T Consensus 59 ~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~ 136 (323)
T PHA02834 59 MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNK 136 (323)
T ss_pred cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccCC
Confidence 467899999999999986 556787665443 57999999999999988888889999999999999999999987654
Q ss_pred ccchhhhhehhhhHHHhHHHHHHHHHhhc
Q psy17210 81 SRTKARISLVVIWLASGLLALPCVLHSTT 109 (132)
Q Consensus 81 ~~~~~~~~~~~iw~~s~~~~~~~~~~~~~ 109 (132)
+.+++...++.+|+.+++.++|+..+.+.
T Consensus 137 ~~~~~~~~i~~iWi~s~l~~~P~~~~~~~ 165 (323)
T PHA02834 137 SISLSVLLSVAAWVCSVILSMPAMVLYYV 165 (323)
T ss_pred ccchHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 33455666788999999999998876543
No 4
>KOG4220|consensus
Probab=99.79 E-value=2.5e-20 Score=132.86 Aligned_cols=110 Identities=31% Similarity=0.595 Sum_probs=103.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS 80 (132)
Q Consensus 1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~ 80 (132)
|||..|+|+.+||++|+++|.+.+|....+.+.+.|..|...|.+...+.+..+.+|++.+..|++|||.+|.+|+.|+.
T Consensus 61 LqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYra 140 (503)
T KOG4220|consen 61 LQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRA 140 (503)
T ss_pred eeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred --ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210 81 --SRTKARISLVVIWLASGLLALPCVLHSTTK 110 (132)
Q Consensus 81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~ 110 (132)
+.+++..+|++.|++|++.-.|.+++|..-
T Consensus 141 kRTtkrA~~MI~~AW~iSfiLWaPaIl~Wqyi 172 (503)
T KOG4220|consen 141 KRTTKRAGLMIGAAWVLSFVLWAPAILFWQYI 172 (503)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 777899999999999999999988877644
No 5
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.79 E-value=5e-19 Score=120.27 Aligned_cols=113 Identities=37% Similarity=0.697 Sum_probs=99.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS 80 (132)
Q Consensus 1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~ 80 (132)
+|+++++++.|||++|++.++...|........++|..++..|+...++.......+.++++++++|||.++++|+++++
T Consensus 15 ~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~ 94 (257)
T PF00001_consen 15 LRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYLAICHPLRYRR 94 (257)
T ss_dssp G-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHTHHH
T ss_pred CCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 47899999999999999999988888887777778999999999999999999999999999999999999999999887
Q ss_pred --ccchhhhhehhhhHHHhHHHHHHHHHhhceeeC
Q psy17210 81 --SRTKARISLVVIWLASGLLALPCVLHSTTKIKN 113 (132)
Q Consensus 81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~ 113 (132)
++++.+..++.+|+.++..++|+.++.+....+
T Consensus 95 ~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~ 129 (257)
T PF00001_consen 95 IRTRRRARIIIILIWIISFLISLPPLFFSWVYFVS 129 (257)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEES
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 446778888999999999999998875544433
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.74 E-value=2.3e-17 Score=121.06 Aligned_cols=107 Identities=25% Similarity=0.542 Sum_probs=90.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS 80 (132)
Q Consensus 1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~ 80 (132)
+|+++|+++.|||++|++..+ ..|..+... .++|.+++..|+...++......++++.++++++|||.+|++|.++++
T Consensus 128 lrt~t~i~llnLAisDLl~~l-~lPf~i~~~-~~~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~ 205 (417)
T PHA02638 128 IKTITDIYIFNLAISDLIFVI-DFPFIIYNE-FDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQK 205 (417)
T ss_pred CCCHhHHHHHHHHHHHHHHHH-HHHHHHHHH-hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 578999999999999998754 677766554 367999999999999999999999999999999999999999988765
Q ss_pred --ccchhhhhehhhhHHHhHHHHHHHHHhhc
Q psy17210 81 --SRTKARISLVVIWLASGLLALPCVLHSTT 109 (132)
Q Consensus 81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~ 109 (132)
+++..+..++.+|+.+++.++|+.++.+.
T Consensus 206 ~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~ 236 (417)
T PHA02638 206 YRTFNIGIILCIISWILSLIITSPAYFIFEA 236 (417)
T ss_pred eecHhhhHhhHhHHHHHHHHHHHHHHHHhhc
Confidence 33445666788999999999999886543
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.73 E-value=3e-17 Score=117.26 Aligned_cols=109 Identities=30% Similarity=0.553 Sum_probs=93.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS 80 (132)
Q Consensus 1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~ 80 (132)
+|+|.|+++.|||++|++.++ ..|..+......+|..++..|+...+.......++.+++++||+|||.++++|++++.
T Consensus 70 ~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~ 148 (335)
T PHA03087 70 IKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNK 148 (335)
T ss_pred ccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Confidence 589999999999999998776 4666665555677888999999999999999999999999999999999999998866
Q ss_pred --ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210 81 --SRTKARISLVVIWLASGLLALPCVLHSTTK 110 (132)
Q Consensus 81 --~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~ 110 (132)
+++++...++.+|+++++...|+....+..
T Consensus 149 ~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~ 180 (335)
T PHA03087 149 INTVKYGYIVSLVIWIISIIETTPILFVYTTK 180 (335)
T ss_pred ccchhhhHHHHHHHHHHHHHHhccHhheeeee
Confidence 556677777889999999999888765544
No 8
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.72 E-value=4.5e-17 Score=119.26 Aligned_cols=101 Identities=24% Similarity=0.330 Sum_probs=83.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccc--cccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210 3 TVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPF--GEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS 80 (132)
Q Consensus 3 ~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~--~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~ 80 (132)
+++++|+.|||++|++. ++..|..+.. ..|.. ++..|++..+....+..+|++++++||+|||.+|++|.++++
T Consensus 67 ~~~~~~I~NLAvsDLl~-l~~lP~~i~~---~~~~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~ 142 (409)
T PHA03235 67 STPTLYMTNLYLANLLT-VFVLPFIMLS---NQGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARS 142 (409)
T ss_pred CccHHHHHHHHHHHHHH-HHHHHHHHHh---cCccccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC
Confidence 46689999999999986 4567766543 33443 468999999999999999999999999999999999986654
Q ss_pred -ccchhhhhehhhhHHHhHHHHHHHHHh
Q psy17210 81 -SRTKARISLVVIWLASGLLALPCVLHS 107 (132)
Q Consensus 81 -~~~~~~~~~~~iw~~s~~~~~~~~~~~ 107 (132)
+++++..+++++|+.+++.++|+.++.
T Consensus 143 ~~~~~a~~ii~~iWi~sll~s~P~~~~~ 170 (409)
T PHA03235 143 SAYRSTYKILGLTWFASLICSGPAPVYT 170 (409)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 466788888899999999999976543
No 9
>KOG2087|consensus
Probab=99.30 E-value=1.2e-11 Score=87.66 Aligned_cols=111 Identities=22% Similarity=0.318 Sum_probs=87.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHHHHHH-h------ccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcC
Q psy17210 3 TVTNYYLVNLSLADLFMAVFNCVFNFIYML-Y------SHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKP 75 (132)
Q Consensus 3 ~~~~~ll~~La~~Dll~~~~~~~~~~~~~~-~------~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p 75 (132)
++..+++.|||.+|++.++........... . ..|......|+..+|+..+.+-.|++.++.+++||+.+|.+|
T Consensus 57 ~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p 136 (363)
T KOG2087|consen 57 NSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYP 136 (363)
T ss_pred cchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheecc
Confidence 466799999999999999865444433221 1 123344589999999999999999999999999999999999
Q ss_pred CCccc-cc-chhhhhehhhhHHHhHHHHHHHHHhhceeeC
Q psy17210 76 LQHRS-SR-TKARISLVVIWLASGLLALPCVLHSTTKIKN 113 (132)
Q Consensus 76 ~~~~~-~~-~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~ 113 (132)
++-.+ .+ |....+.+..|+.+++.++.|.++...+-.+
T Consensus 137 ~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~~~ 176 (363)
T KOG2087|consen 137 FRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYGAS 176 (363)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCccc
Confidence 98766 33 3467777889999999999999885555333
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.18 E-value=7.5e-11 Score=81.78 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=72.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS 80 (132)
Q Consensus 1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~ 80 (132)
||+|++++++.+|++|++......|.....+. +.+.....|-...+...++...+...+..|++||++||+.|.+|++
T Consensus 21 Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~--~~~i~~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV~~P~~Y~~ 98 (257)
T PF10320_consen 21 LRSPCYILICILCFADLICLLGTLPFMLFLFR--DHQITRSECFWQIFFYIFFQCAQSVIMLAIAIDRLIAVCFPLRYRT 98 (257)
T ss_pred cccchHHHHHHHHHHHHHHHhhHHHHHHHHHh--heeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEeehhhhhh
Confidence 79999999999999999998887777774432 3455667898888888888889999999999999999999999999
Q ss_pred ccchhhhheh
Q psy17210 81 SRTKARISLV 90 (132)
Q Consensus 81 ~~~~~~~~~~ 90 (132)
..++......
T Consensus 99 ~~~~~y~~~~ 108 (257)
T PF10320_consen 99 ISTRKYLIIL 108 (257)
T ss_pred cccccchhhH
Confidence 6655544443
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.03 E-value=1.7e-09 Score=75.65 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=87.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccccc-ccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q psy17210 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEI-YCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHR 79 (132)
Q Consensus 1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~ 79 (132)
+|++.+.+..+.|++|.+.++.......-....+.....+. .-...+.....+-..+..+..+||++|+.++..|.+|+
T Consensus 24 ~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~~~~~liaiNRf~ai~fP~~y~ 103 (274)
T PF10328_consen 24 LRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGPLSHLLIAINRFCAIFFPFKYK 103 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeeHHHHH
Confidence 57899999999999999988744322222222222122221 22344667777778899999999999999999999988
Q ss_pred c--ccchhhhhehhhhHHHhHHHHHHHHHhhceeeCCccccceee
Q psy17210 80 S--SRTKARISLVVIWLASGLLALPCVLHSTTKIKNGDLAGQWIT 122 (132)
Q Consensus 80 ~--~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (132)
+ +.+.++..+...|++++....+.....+...........|..
T Consensus 104 ~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~ 148 (274)
T PF10328_consen 104 KIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSY 148 (274)
T ss_pred hHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeec
Confidence 8 777888889999999998877777655556555555555553
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.51 E-value=1.1e-06 Score=62.67 Aligned_cols=110 Identities=19% Similarity=0.331 Sum_probs=78.4
Q ss_pred CCc-hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcc-----ccccc----cccccchHHhHHhHHHHHHHHHHHHHHHHH
Q psy17210 1 MRT-VTNYYLVNLSLADLFMAVFNCVFNFIYMLYSH-----WPFGE----IYCKVNYFITNITVAASVFTLVAISLDRYM 70 (132)
Q Consensus 1 L~~-~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~-----~~~~~----~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~ 70 (132)
||+ |.|.++..+|++|++..+...+.......... ..... ........+...+...|.+....||+.|+.
T Consensus 26 mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~~S~WL~V~mA~iR~l 105 (318)
T PF10324_consen 26 MRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFRRISIWLGVLMALIRYL 105 (318)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 465 78999999999999998877777665544321 11111 112334456777788999999999999999
Q ss_pred HHHcCCCccc----ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210 71 AIMKPLQHRS----SRTKARISLVVIWLASGLLALPCVLHSTTK 110 (132)
Q Consensus 71 ~i~~p~~~~~----~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~ 110 (132)
++.+|.+.+. +++.+..++.++.+.+.....+..+..+..
T Consensus 106 ~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~ 149 (318)
T PF10324_consen 106 SIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIV 149 (318)
T ss_pred HHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEE
Confidence 9999987542 455566667777888888888877655544
No 13
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.38 E-value=5e-07 Score=63.60 Aligned_cols=114 Identities=20% Similarity=0.398 Sum_probs=79.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh--cc--ccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCC
Q psy17210 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLY--SH--WPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPL 76 (132)
Q Consensus 1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~--~~--~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~ 76 (132)
+++|.+-++.+-+++|++..+............ .+ ...++..-+......+..........+.+|++|+.+|++|.
T Consensus 29 ~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~ 108 (283)
T PF10323_consen 29 FKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPT 108 (283)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEeec
Confidence 468899999999999999877544333222111 11 11222234555566677778888889999999999999998
Q ss_pred -Cccc--ccchhhhhehhhhHHHhHHHHHHHHHhhceeeCC
Q psy17210 77 -QHRS--SRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114 (132)
Q Consensus 77 -~~~~--~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~~~~ 114 (132)
++.+ ++.+...++++-|+.+++.++|.....+...++.
T Consensus 109 ~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~ 149 (283)
T PF10323_consen 109 SRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNE 149 (283)
T ss_pred HHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecc
Confidence 5555 4555666778889999999999766655554444
No 14
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.27 E-value=3.1e-05 Score=51.96 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcC
Q psy17210 5 TNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKP 75 (132)
Q Consensus 5 ~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p 75 (132)
.+-++.||.++|++.++..+.........+.-..++..|..++++....-..+.+...+||+.-|..+.+|
T Consensus 36 R~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~ 106 (201)
T PF11710_consen 36 RHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45689999999999998755544444444444456789999999999999999999999999999999988
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.64 E-value=0.00053 Score=48.87 Aligned_cols=100 Identities=18% Similarity=0.268 Sum_probs=73.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS 80 (132)
Q Consensus 1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~ 80 (132)
+|+|.+-++.-++++|++..+..... . ...+...++..|.+++++..++..++.+=.++||++=|..+.+.. ..
T Consensus 37 ~r~~~~rli~yl~~~~ll~~v~~~~~---~-~~~~~~~~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~~--~~ 110 (303)
T PF05462_consen 37 LRKPINRLIFYLSIANLLTNVASMIM---T-LSPSAGENSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKRY--DE 110 (303)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHH---H-hcccCCCCCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEcC--cc
Confidence 58889999999999999877543222 1 223334457889999999999999998778899999998887642 23
Q ss_pred ccchhhhhehhhhHHHhHHHHHHHHH
Q psy17210 81 SRTKARISLVVIWLASGLLALPCVLH 106 (132)
Q Consensus 81 ~~~~~~~~~~~iw~~s~~~~~~~~~~ 106 (132)
.+|.-+...+..|.++++.++.+...
T Consensus 111 ~~k~e~~Y~l~~wGiPli~a~i~l~~ 136 (303)
T PF05462_consen 111 LEKLEKYYHLVCWGIPLIPAVIPLIG 136 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444556678899999887766543
No 16
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.43 E-value=0.00047 Score=48.15 Aligned_cols=98 Identities=19% Similarity=0.315 Sum_probs=68.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHH-cCCCccc
Q psy17210 2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIM-KPLQHRS 80 (132)
Q Consensus 2 ~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~-~p~~~~~ 80 (132)
.+|.|..+.+||++|.+..+.-........... ..+++..||...|..-.....++.+...++. |.||. .|...+.
T Consensus 8 ~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~-~~~~d~gCK~v~Y~~RV~RglSictTCLLSv--fQAItISP~~s~w 84 (265)
T PF03402_consen 8 LKPIDLILIHLALANILVLLSRGIPQTMAFFGW-KFFDDIGCKIVFYIYRVARGLSICTTCLLSV--FQAITISPSNSRW 84 (265)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc-ccCCCceeeeeeeehHHhchhhHHhhhHHHH--HhhEEEecCCchh
Confidence 368999999999999988765332222222222 2368999999999999999999999999999 77776 5643221
Q ss_pred ------ccchhhhhehhhhHHHhHHHHH
Q psy17210 81 ------SRTKARISLVVIWLASGLLALP 102 (132)
Q Consensus 81 ------~~~~~~~~~~~iw~~s~~~~~~ 102 (132)
.+|.....+...|++.......
T Consensus 85 ~~lK~k~pk~i~~~~~~~Wilnlli~~~ 112 (265)
T PF03402_consen 85 AELKVKAPKYIGPSCLFCWILNLLININ 112 (265)
T ss_pred hhhhhhcCCccccHHHHHHHHHHhhhcc
Confidence 2223333445568887766543
No 17
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=96.42 E-value=0.022 Score=40.15 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHh--ccccccccccccc-hHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q psy17210 7 YYLVNLSLADLFMAVFNCVFNFIYMLY--SHWPFGEIYCKVN-YFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRT 83 (132)
Q Consensus 7 ~ll~~La~~Dll~~~~~~~~~~~~~~~--~~~~~~~~~C~~~-~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~~~~ 83 (132)
.++--....|.+.+....+........ .+.......-.+. +.-..............||+||..|+..|..|++.++
T Consensus 42 ~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~ 121 (273)
T PF10316_consen 42 SLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRK 121 (273)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCc
Confidence 344456788999888665554433332 1111111111222 2223334456677788999999999999988887544
Q ss_pred h
Q psy17210 84 K 84 (132)
Q Consensus 84 ~ 84 (132)
+
T Consensus 122 k 122 (273)
T PF10316_consen 122 K 122 (273)
T ss_pred c
Confidence 4
No 18
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=95.68 E-value=0.11 Score=37.41 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=52.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccc------hHHhHHhHHHHHHHHHHHHHHHHHHHHcC
Q psy17210 2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVN------YFITNITVAASVFTLVAISLDRYMAIMKP 75 (132)
Q Consensus 2 ~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~------~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p 75 (132)
|+|.|-++.-|++.|+.......... ..+. ..|...|+.. +.....+...+......++++|...+..|
T Consensus 64 k~~~ykiM~~L~i~Di~~l~~~si~t--G~l~---i~G~vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~ 138 (313)
T PF10321_consen 64 KMSCYKIMFFLAIFDIIQLFINSIIT--GILA---IFGAVFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNFP 138 (313)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhhhhh--hHHH---hcCccccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 57899999999999998765321111 1111 1123455443 34455666778888889999999999987
Q ss_pred CCccc--ccchhhhheh
Q psy17210 76 LQHRS--SRTKARISLV 90 (132)
Q Consensus 76 ~~~~~--~~~~~~~~~~ 90 (132)
..... ..++....+.
T Consensus 139 ~~~~~~F~g~~~~~~l~ 155 (313)
T PF10321_consen 139 FKLKFLFEGKRTYIVLF 155 (313)
T ss_pred hhhHHhhcCceEEeeeh
Confidence 55443 3344444333
No 19
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=95.57 E-value=0.081 Score=37.80 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=65.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCc----
Q psy17210 3 TVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQH---- 78 (132)
Q Consensus 3 ~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~---- 78 (132)
+|.|..+.+||+++++.-..............+....+..++...+...+....+.+..+.+++--+..|...-+.
T Consensus 42 ~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~ 121 (303)
T PF05296_consen 42 SPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLW 121 (303)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHH
Confidence 5889999999999998876655444444444444445567788888888888889999999999766777643221
Q ss_pred --ccccchhhhhehhhhHHHhHHHHH
Q psy17210 79 --RSSRTKARISLVVIWLASGLLALP 102 (132)
Q Consensus 79 --~~~~~~~~~~~~~iw~~s~~~~~~ 102 (132)
++..+....++.+.++.++...++
T Consensus 122 LK~rI~~~v~~lLl~s~l~s~~~~~~ 147 (303)
T PF05296_consen 122 LKRRISKVVPWLLLGSLLISFLNLLS 147 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222333445667777743333
No 20
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=95.55 E-value=0.24 Score=35.72 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=52.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhHH---HHHHHHhcc----ccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHc
Q psy17210 2 RTVTNYYLVNLSLADLFMAVFNCVF---NFIYMLYSH----WPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMK 74 (132)
Q Consensus 2 ~~~~~~ll~~La~~Dll~~~~~~~~---~~~~~~~~~----~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~ 74 (132)
|...-+++....++.++.++..... .+..+...+ ...+...|-........+......+..++++||.+|..+
T Consensus 48 H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~ 127 (324)
T PF10292_consen 48 HFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFF 127 (324)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445566667777777665432222 222222211 223445566666667777788888999999999999998
Q ss_pred CCCcccccchh
Q psy17210 75 PLQHRSSRTKA 85 (132)
Q Consensus 75 p~~~~~~~~~~ 85 (132)
.-+|.+..+..
T Consensus 128 ~~~YE~~~~~~ 138 (324)
T PF10292_consen 128 SKSYEKSGKWL 138 (324)
T ss_pred HHHhcCCCccH
Confidence 87777654433
No 21
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=95.31 E-value=0.0046 Score=42.31 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Q psy17210 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS 80 (132)
Q Consensus 1 L~~~~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~ 80 (132)
+|+..+....||++++++..+..+.. ...........++..|...+.....+..++..=+.+.+++-|..+..+.. +
T Consensus 31 lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~~--~ 107 (242)
T PF00002_consen 31 LRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVFN--S 107 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHHHHHHHHHHHHHHHhheeEEEeec--c
Confidence 35667778889999988766532211 11111111111223599999988888888887788999999998877632 2
Q ss_pred ccchhhhhehhhhHHHhHHHHHHHHHh
Q psy17210 81 SRTKARISLVVIWLASGLLALPCVLHS 107 (132)
Q Consensus 81 ~~~~~~~~~~~iw~~s~~~~~~~~~~~ 107 (132)
.+++.+...+..|.++.+.........
T Consensus 108 ~~~~~~~~~~~gwg~P~~iv~i~~~~~ 134 (242)
T PF00002_consen 108 SRRRFWWYYLIGWGIPALIVVISVAVN 134 (242)
T ss_dssp ---------------------------
T ss_pred cchhhheeeeeeecCcceeeeeeeeec
Confidence 234445566778998888777666555
No 22
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=95.02 E-value=0.021 Score=36.64 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcccccc---ccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc--cc
Q psy17210 8 YLVNLSLADLFMAVFNCVFNFIYMLYSHWPFG---EIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS--SR 82 (132)
Q Consensus 8 ll~~La~~Dll~~~~~~~~~~~~~~~~~~~~~---~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~--~~ 82 (132)
++.++++++++..+.............+...+ +...+.......++-....+...+|+++|-..+.+|++... +.
T Consensus 6 YI~~M~i~gi~~~~~~~v~~~~~~~~~~~~Y~~yr~~~G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~ 85 (153)
T PF03383_consen 6 YIYNMIICGIIDKFFIFVDFWIPLFLPDEGYEEYRQFFGKEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSD 85 (153)
T ss_pred EEeHHHHhhHHHHHHHHhhhhhhhccChhHHHHHHHHhCCEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCcccccc
Confidence 34567777776665432222222222211111 12234444455566667778888999999999999998844 66
Q ss_pred chhhhhehhhhHHHhHHHHHHHH
Q psy17210 83 TKARISLVVIWLASGLLALPCVL 105 (132)
Q Consensus 83 ~~~~~~~~~iw~~s~~~~~~~~~ 105 (132)
+|...-+..+.+..+...+.|.+
T Consensus 86 ~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 86 KKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred chhHHHHHHHHHHHHHHHHhhcC
Confidence 77766677766666666655554
No 23
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=94.96 E-value=0.091 Score=36.60 Aligned_cols=60 Identities=17% Similarity=0.374 Sum_probs=42.5
Q ss_pred cccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcccccchhh-hhehhhhHHHhHHH
Q psy17210 41 IYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTKAR-ISLVVIWLASGLLA 100 (132)
Q Consensus 41 ~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~~~~~~~-~~~~~iw~~s~~~~ 100 (132)
...++..++...+..+...+...++++|+-++..|.++.+..++.. ..++.+.+.++...
T Consensus 79 ~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~~~~i~~i~~~p~~~~ 139 (275)
T PF02118_consen 79 FFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYYWIIIIIIFLLPFSFT 139 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhhheeeeeehhHHHH
Confidence 3455666677778888889999999999999999998888444333 34444455554443
No 24
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=92.59 E-value=0.35 Score=33.27 Aligned_cols=45 Identities=11% Similarity=0.204 Sum_probs=33.3
Q ss_pred ccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcccccch
Q psy17210 40 EIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTK 84 (132)
Q Consensus 40 ~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~~~~~ 84 (132)
+..++..........+.++.....+++||++|....-+|.+++..
T Consensus 82 ~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~~ 126 (236)
T PF02175_consen 82 PTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRTL 126 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCcee
Confidence 344555566777788888899999999999999876556544443
No 25
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=92.21 E-value=1.7 Score=30.81 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccc-----------ccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy17210 5 TNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWP-----------FGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIM 73 (132)
Q Consensus 5 ~~~ll~~La~~Dll~~~~~~~~~~~~~~~~~~~-----------~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~ 73 (132)
..+++.|-|+.|++.+....... ......+.. .++..|.........+...+.+++..--.-||..+.
T Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~q-~R~i~~~~~~~~~~~GpC~~~~~~~C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~ 112 (292)
T PF10317_consen 34 YSILLLNTAIFDLISIISAFLTQ-PRIIPNGTSIAVISYGPCRYFGPWFCFFCYHIMLHFSIHSGWSIILSFYYRYYILR 112 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhccCCCCcEEEEeeecceecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999876433222 222222211 234445544445555556666666666667999998
Q ss_pred cCCCcccccchhhhhehhhhHHHhHHHH
Q psy17210 74 KPLQHRSSRTKARISLVVIWLASGLLAL 101 (132)
Q Consensus 74 ~p~~~~~~~~~~~~~~~~iw~~s~~~~~ 101 (132)
++.. ++++....+...+..++...+
T Consensus 113 ~~~~---~~~~~i~~~~l~~~p~~~~~i 137 (292)
T PF10317_consen 113 NPSP---SRKRIIFICILIYIPSFSMLI 137 (292)
T ss_pred CCCC---chhHHHHHHHHHHHHHHHHHH
Confidence 6522 444444455555665555544
No 26
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=85.96 E-value=9.7 Score=27.68 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=32.1
Q ss_pred ccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q psy17210 38 FGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHR 79 (132)
Q Consensus 38 ~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~ 79 (132)
+....|.........+.....+...++.+||-.|-..|-.+.
T Consensus 96 f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~ 137 (328)
T PF02117_consen 96 FTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYS 137 (328)
T ss_pred eecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence 345567777777777777778899999999999998874443
No 27
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=81.13 E-value=10 Score=27.13 Aligned_cols=104 Identities=10% Similarity=0.238 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHHHHHHHH----HhHHHHHHHHhccccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q psy17210 4 VTNYYLVNLSLADLFMAVF----NCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHR 79 (132)
Q Consensus 4 ~~~~ll~~La~~Dll~~~~----~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~ 79 (132)
+..+|+..|.++-.+.+.. -+|..+......+...+ ..-.+..+....+.++-.++=..+|++|..-.. +|+.
T Consensus 48 ~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~s-~~f~~~Sy~idf~h~siLfsNlviaIqR~fVFF--fr~~ 124 (305)
T PF04789_consen 48 KFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQS-ELFIFMSYLIDFCHYSILFSNLVIAIQRFFVFF--FRNL 124 (305)
T ss_pred hHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhcc-chhhHHHHHHHHHHHHHHHHHHHHHHhhheeee--ehhh
Confidence 3456777777776665542 23555544443332222 233566677788888888888999999976553 1222
Q ss_pred c----ccchhhhhehhhhHHHhHHHHHHHHHhhce
Q psy17210 80 S----SRTKARISLVVIWLASGLLALPCVLHSTTK 110 (132)
Q Consensus 80 ~----~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~ 110 (132)
. .+.-..+-...+|+++........-..-.+
T Consensus 125 t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y 159 (305)
T PF04789_consen 125 TDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRY 159 (305)
T ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 1 122233345678888887765555433333
No 28
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=75.09 E-value=31 Score=25.90 Aligned_cols=95 Identities=16% Similarity=0.293 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhccc-c----------ccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcC
Q psy17210 7 YYLVNLSLADLFMAVFNCVFNFIYMLYSHW-P----------FGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKP 75 (132)
Q Consensus 7 ~ll~~La~~Dll~~~~~~~~~~~~~~~~~~-~----------~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p 75 (132)
-.+..|+++|++.++-.+..........+. . .....|.........+-.++-+=+.+.|+|-|..+.+.
T Consensus 69 rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~ 148 (405)
T PF02101_consen 69 RILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRS 148 (405)
T ss_pred hhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecc
Confidence 467899999999887665555554322211 0 01245665555445555555555667788877766321
Q ss_pred CCcccccchhhhhehhhhHHHhHHHHHHHH
Q psy17210 76 LQHRSSRTKARISLVVIWLASGLLALPCVL 105 (132)
Q Consensus 76 ~~~~~~~~~~~~~~~~iw~~s~~~~~~~~~ 105 (132)
..+.+...-=+..|..+.+...-...
T Consensus 149 ----ag~~~~~lYH~~aWgl~~lL~~~Gl~ 174 (405)
T PF02101_consen 149 ----AGRSTIWLYHMMAWGLPALLCAEGLA 174 (405)
T ss_pred ----CCCcchhHHHHHHHHHHHHHHHhccc
Confidence 11112223335678877766654443
No 29
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=74.50 E-value=19 Score=25.45 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcc----ccccccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcccccchhhh
Q psy17210 12 LSLADLFMAVFNCVFNFIYMLYSH----WPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTKARI 87 (132)
Q Consensus 12 La~~Dll~~~~~~~~~~~~~~~~~----~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~~~~~~~~ 87 (132)
..+.|+..+....|........+. ...-......+.+...........+...+--.||.++..+.+....++.+..
T Consensus 50 ~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~~~~~~~r~~ 129 (302)
T PF10318_consen 50 NFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSRSLWKKIRII 129 (302)
T ss_pred HHHHHHHhhhEEeeeeccchHHhhCCcchhhcccChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 344667767666665444332211 1111233456666666677777777777888899999865441223333344
Q ss_pred hehhhhHHHhHHHHHHHH
Q psy17210 88 SLVVIWLASGLLALPCVL 105 (132)
Q Consensus 88 ~~~~iw~~s~~~~~~~~~ 105 (132)
.....++.+.....|...
T Consensus 130 ~~~~~y~~~~~~~~~~~~ 147 (302)
T PF10318_consen 130 FIIFNYIIAFLFFIPIYL 147 (302)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 445556666666666665
No 30
>KOG4193|consensus
Probab=63.50 E-value=35 Score=27.28 Aligned_cols=63 Identities=13% Similarity=0.269 Sum_probs=42.5
Q ss_pred ccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcccccchhhhhehhhhHHHhHHHHHHHH
Q psy17210 42 YCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVL 105 (132)
Q Consensus 42 ~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~~~~~~~~~~~~iw~~s~~~~~~~~~ 105 (132)
.|+..+++...+..++.+=+..+++.-|..++.-++.. ..++........|...++.......
T Consensus 385 ~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf~~~-~~~~~l~~~~~gwg~Pavvv~Isa~ 447 (610)
T KOG4193|consen 385 LCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVFRSR-PRRRKLLYSLYGWGVPAVVVGVSAL 447 (610)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHhhhhHHHHhheeE
Confidence 69999999999998888888888888887555433222 3333333334778877766544443
No 31
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=52.18 E-value=61 Score=23.89 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=25.2
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q psy17210 49 ITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRT 83 (132)
Q Consensus 49 ~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~~~~ 83 (132)
+..-......+.+.++++||..|-...-.|-+++|
T Consensus 129 l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~~R 163 (365)
T PF03125_consen 129 LRWHYMFSAIFCLLAIVIERCFATYFIKDYEKKSR 163 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 33444456678888999999999988766765444
No 32
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=41.94 E-value=1.1e+02 Score=21.00 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=27.0
Q ss_pred cccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcC
Q psy17210 39 GEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKP 75 (132)
Q Consensus 39 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p 75 (132)
.-..|.+..-....+.........++|++||.-|..-
T Consensus 113 tI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k 149 (226)
T PF06681_consen 113 TIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLK 149 (226)
T ss_pred EEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeec
Confidence 4467888776655555666666778999999998753
No 33
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=40.90 E-value=1.3e+02 Score=21.46 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=33.9
Q ss_pred ccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcccc--cchhhhh--ehhhhHHHhHHHHHHHHH
Q psy17210 40 EIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSS--RTKARIS--LVVIWLASGLLALPCVLH 106 (132)
Q Consensus 40 ~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~~--~~~~~~~--~~~iw~~s~~~~~~~~~~ 106 (132)
+.+|.+...+.......-.....+|+. |-..|..+.+...+ .|+++.. ....+.+.++........
T Consensus 56 ~~wCDI~~kl~~~~~~g~~~a~lcI~r-~L~~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yiv 125 (283)
T PF02076_consen 56 PVWCDISTKLIIGSSVGIPAASLCIMR-RLYRIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIV 125 (283)
T ss_pred ceeeeehHHHHHHHHHHHHHHHHHHHH-HHHHHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999987766666555555555554 22356555443332 1222222 244455555554444433
No 34
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=36.46 E-value=1.5e+02 Score=21.29 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccccc------ccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q psy17210 10 VNLSLADLFMAVFNCVFNFIYMLYSHWPFG------EIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRT 83 (132)
Q Consensus 10 ~~La~~Dll~~~~~~~~~~~~~~~~~~~~~------~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~~~~ 83 (132)
....++|+-.+....|..+.....+ ...| +...+..............-.+..--+.|+.+|.+..+.+..++
T Consensus 52 i~~~l~di~~t~L~qpipLfP~~ag-y~~G~l~~~f~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~l~~ 130 (303)
T PF10327_consen 52 ISCTLTDIHLTFLMQPIPLFPIPAG-YCVGFLARYFGISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHVLPK 130 (303)
T ss_pred HHHHHhhhhhhhhccchhhcceeEE-EEEeehhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCcH
Confidence 4556789988887777776664432 1212 11222222222233333334444445579999998876666555
Q ss_pred hhhhhe
Q psy17210 84 KARISL 89 (132)
Q Consensus 84 ~~~~~~ 89 (132)
......
T Consensus 131 ~~~~~~ 136 (303)
T PF10327_consen 131 WFYIFF 136 (303)
T ss_pred HHHHHH
Confidence 544433
No 35
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=36.38 E-value=13 Score=26.35 Aligned_cols=34 Identities=24% Similarity=0.149 Sum_probs=20.3
Q ss_pred chHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q psy17210 46 NYFITNITVAASVFTLVAISLDRYMAIMKPLQHR 79 (132)
Q Consensus 46 ~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~ 79 (132)
.......+...+...++.--+.||.++++|.+-+
T Consensus 85 l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~ 118 (307)
T PF10326_consen 85 LLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLR 118 (307)
T ss_pred hhhhhhhhHHHHHHHHHhHhhhheeeeccchhhc
Confidence 3333333444445555555568999999996543
No 36
>KOG3609|consensus
Probab=36.32 E-value=2.6e+02 Score=23.46 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=42.1
Q ss_pred hHH-HHHHHHhccccccccccc-cchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCccc-ccchhhhhehhhhHHHhHHH
Q psy17210 24 CVF-NFIYMLYSHWPFGEIYCK-VNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRS-SRTKARISLVVIWLASGLLA 100 (132)
Q Consensus 24 ~~~-~~~~~~~~~~~~~~~~C~-~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~-~~~~~~~~~~~iw~~s~~~~ 100 (132)
.|. .+.+.+......|...|+ +..|+.+..++.....+..++-.|..- .+....+ ..-+..=..+..|+.+++++
T Consensus 323 ~P~~~l~yllap~S~~G~~~r~PfmKFi~H~~Sy~~FL~LL~l~s~~~~~--~~~~~~~g~~p~~vE~li~~wV~G~iw~ 400 (822)
T KOG3609|consen 323 FPMPSLVYLLAPMSRKGTTMRKPFMKFIAHITSYLVFLILLILASLIGFY--FAWTDSRGVTPQALEILIYLWVMGLIWE 400 (822)
T ss_pred hHHHHHHHHhCCCCcccchhhchHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhcccCCCCcHHHHHHHHHHHHHHHH
Confidence 344 445555566667766666 667777777777766666555544332 2211112 12223334566788887776
Q ss_pred H
Q psy17210 101 L 101 (132)
Q Consensus 101 ~ 101 (132)
=
T Consensus 401 E 401 (822)
T KOG3609|consen 401 E 401 (822)
T ss_pred H
Confidence 3
No 37
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=33.56 E-value=1.9e+02 Score=21.19 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=50.8
Q ss_pred cccccccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcccccchhhhhehhhhHHHhHHHHHHHHHhhcee
Q psy17210 39 GEIYCKVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKI 111 (132)
Q Consensus 39 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~~~~~~~~~~~~iw~~s~~~~~~~~~~~~~~~ 111 (132)
++..|.....+.+.+..++..=-+.+++.-+.+-..........++....=++.|.++....+..+.....+-
T Consensus 90 ~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~Vdg 162 (328)
T PF01534_consen 90 ENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAIEKKSSYFHLVAWGIPAVLTIAVLALRKVDG 162 (328)
T ss_pred CCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhhhHHhhhhHHHHHHHHHhccccc
Confidence 3567888887777777776655667788778877654443335566666778899999988877776555443
No 38
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=23.36 E-value=1.9e+02 Score=21.01 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=41.2
Q ss_pred ccchHHhHHhHHHHHHHHHHHHHHHHHHHHcCCCcccccc-hhhhhehhhhHHHhHHHHHHHH
Q psy17210 44 KVNYFITNITVAASVFTLVAISLDRYMAIMKPLQHRSSRT-KARISLVVIWLASGLLALPCVL 105 (132)
Q Consensus 44 ~~~~~~~~~~~~~s~~~l~~ia~~Ry~~i~~p~~~~~~~~-~~~~~~~~iw~~s~~~~~~~~~ 105 (132)
+...+....+-+.+.....+.++-|-.-+..|.++++..+ -.+...-.+.++++....|...
T Consensus 104 k~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i~~~i~~~~~P~i~i~p~~~~f~~~p 166 (307)
T PF10322_consen 104 KILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKICRKIFRIWIPFIFIYPFCFTFPMFP 166 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHHHHhHHHHHHHHHHHHHHHHHHHccC
Confidence 4555667777888888899999999999999976654222 2233344455566665555543
Done!