RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17210
(132 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 103 bits (260), Expect = 2e-28
Identities = 43/112 (38%), Positives = 73/112 (65%), Gaps = 2/112 (1%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
+RT TN +L+NL++ADL + + Y++ WPFG+ CK+ F+ + AS+
Sbjct: 9 LRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYASILL 68
Query: 61 LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVLHSTTK 110
L AIS+DRY+AI+ PL++R RT +A++ ++V+W+ + LL+LP +L S +
Sbjct: 69 LTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 57.5 bits (139), Expect = 1e-10
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 2 RTVTNYYLVNLSLADL-FMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
+T + YL+NL+++DL F+ F Y + W FGE CK+ + I S+
Sbjct: 71 KTPMDIYLLNLAVSDLLFVMTLP--FQIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNF 128
Query: 61 LVAISLDRYMAIMKPLQHRSSRTK--ARISLVVIWLASGLLALPCVLHSTTK 110
+ +S+DRY+AI+ P++ T I +VIW+ S + P + TTK
Sbjct: 129 ITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTK 180
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 45.4 bits (107), Expect = 2e-06
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFI-YMLYSHWPFGEIYCKVNYFITNITVAASVF 59
++T+T+ Y+ NL+++DL +F F FI Y + W FG+ CKV I +++F
Sbjct: 128 IKTITDIYIFNLAISDL---IFVIDFPFIIYNEFDQWIFGDFMCKVISASYYIGFFSNMF 184
Query: 60 TLVAISLDRYMAIMKPLQHRSSRT-KARISLVVI-WLASGLLALP 102
+ +S+DRY AI+ P+ + RT I L +I W+ S ++ P
Sbjct: 185 LITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSP 229
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 39.9 bits (93), Expect = 1e-04
Identities = 27/106 (25%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 4 VTNYYLVNLSLADLFMAVFNCVFNFIYMLYS---HWPFGEIYCKVNYFITNITVAASVFT 60
V + YL N++++DL + VF+F +++++ W FGE CK+ + + +++F
Sbjct: 61 VVDVYLFNIAMSDLML-----VFSFPFIIHNDLNEWIFGEFMCKLVLGVYFVGFFSNMFF 115
Query: 61 LVAISLDRYMAIMKPLQHRSSRTKARISL-VVIWLASGLLALPCVL 105
+ IS+DRY+ ++ + ++ + L V W+ S +L++P ++
Sbjct: 116 VTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMV 161
>gnl|CDD|177562 PHA03234, PHA03234, DNA packaging protein UL33; Provisional.
Length = 338
Score = 35.7 bits (82), Expect = 0.003
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTL 61
T++YL+ L +D + CVF + + F + +C+ FI + + + S+ L
Sbjct: 66 HNATSFYLITLFASDFLHML--CVFFLTLNREALFNFNQAFCQCVLFIYHASCSYSICML 123
Query: 62 VAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNGD 115
I+ RY + + ++ ++ +++LAS + A+P L T+ K G+
Sbjct: 124 AIIATIRYKTLHRRKKNDKKNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGN 177
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 33.6 bits (77), Expect = 0.020
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 8 YLVNLSLADLFMAVFNCVFNFIYMLYSHW---PFGEIYCKVNYFITNITVAASVFTLVAI 64
Y+ NL LA+L VF +++ S+ CK + + T+ I
Sbjct: 72 YMTNLYLANLLT-----VFVLPFIMLSNQGLLSGSVAGCKFASLLYYASCTVGFATVALI 126
Query: 65 SLDRYMAIMKPLQHRSSRTKAR-ISLVVIWLASGLLALPCVLHSTTKIKNG 114
+ DRY I + + RSS ++ L + W AS + + P +++T +
Sbjct: 127 AADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDD 177
>gnl|CDD|215186 PLN02327, PLN02327, CTP synthase.
Length = 557
Score = 29.2 bits (66), Expect = 0.52
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 67 DRYMAIMKPLQHRSSRTKARISLVVIWLASGLL 99
D Y++++K L H S + LV+ W+A+ L
Sbjct: 311 DSYLSVLKALLHASVACSRK--LVIDWVAASDL 341
>gnl|CDD|213356 cd12822, TmCorA-like, Thermotoga maritima CorA-like family. This
family belongs to the MIT superfamily of essential
membrane proteins involved in transporting divalent
cations (uptake or efflux) across membranes. Members of
the Thermotoga maritima CorA_like family are found in
all three kingdoms of life. It is a functionally diverse
family, in addition to the CorA Co2+ transporter from
the hyperthermophilic Thermotoga maritima, it includes
three Saccharomyces cerevisiae members: two plasma
membrane proteins, the Mg2+ transporter Alr1p/Swc3p and
the putative Mg2+ transporter, Alr2p, and the vacuole
membrane protein Mnr2p, a putative Mg2+ transporter.
Thermotoga maritima CorA forms funnel-shaped
homopentamers, the tip of the funnel is formed from two
C-terminal transmembrane (TM) helices from each monomer,
and the large opening of the funnel from the N-terminal
cytoplasmic domains. The GMN signature motif of the MIT
superfamily occurs just after TM1, mutation within this
motif is known to abolish Mg2+ transport by Alr1p.
Natural variants in this signature sequence may be
associated with the transport of different divalent
cations. The functional diversity of the MIT superfamily
may also be due to minor structural differences
regulating gating, substrate selection, and transport.
Length = 289
Score = 27.9 bits (63), Expect = 1.6
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 27 NFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAI 64
NF YM HWP+G YFI + L+
Sbjct: 252 NFEYMPELHWPYG-------YFIVLGIMLLIAGGLLWW 282
>gnl|CDD|181509 PRK08629, PRK08629, coproporphyrinogen III oxidase; Provisional.
Length = 433
Score = 26.9 bits (60), Expect = 3.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 30 YMLYSHWPFGEI---YCKVNYFITNITVAASVFTLVAISLDRYMAIMKPL 76
YMLY+H PF YC + F A + F ISL + M ++K L
Sbjct: 53 YMLYAHVPFCHTLCPYCSFHRFYFKEDKARAYF----ISLRKEMEMVKEL 98
>gnl|CDD|204716 pfam11710, Git3, G protein-coupled glucose receptor regulating
Gpa2. Git3 is one of six proteins required for
glucose-triggered adenylate cyclase activation, and is a
G protein-coupled receptor responsible for the
activation of adenylate cyclase through Gpa2 -
heterotrimeric G protein alpha subunit, part of the
glucose-detection pathway. Git3 contains seven predicted
transmembrane domains, a third cytoplasmic loop and a
cytoplasmic tail. This is the conserved N-terminus of
these proteins, and the C-terminal conserved region is
now in family Git3_C.
Length = 196
Score = 25.7 bits (57), Expect = 8.5
Identities = 11/67 (16%), Positives = 30/67 (44%)
Query: 9 LVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDR 68
++ L L D A+ ++ + + + +C+V F T + + + ++A ++
Sbjct: 41 ILFLILFDFIKALVLLIYPIVVLANNSIYADPAFCQVVGFFTAVAIEGADIAILAFAIHT 100
Query: 69 YMAIMKP 75
+ + KP
Sbjct: 101 ALLVFKP 107
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.138 0.438
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,466,196
Number of extensions: 552062
Number of successful extensions: 695
Number of sequences better than 10.0: 1
Number of HSP's gapped: 685
Number of HSP's successfully gapped: 43
Length of query: 132
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 46
Effective length of database: 7,123,158
Effective search space: 327665268
Effective search space used: 327665268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.1 bits)