RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17210
(132 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 145 bits (367), Expect = 1e-43
Identities = 52/114 (45%), Positives = 74/114 (64%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
MRTVTNY+LVNL+ A+ MA FN V NF Y +++ W +G YCK + F V AS+++
Sbjct: 63 MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122
Query: 61 LVAISLDRYMAIMKPLQHRSSRTKARISLVVIWLASGLLALPCVLHSTTKIKNG 114
+ A++ DRYMAI+ PLQ R S T ++ + VIW+ + LLA P +STT+
Sbjct: 123 MTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQGYYSTTETMPS 176
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 129 bits (326), Expect = 4e-37
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
M+T TN Y+ NL+LAD + + F +L WPFG CK I + S FT
Sbjct: 156 MKTATNIYIFNLALADT-LVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFT 214
Query: 61 LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVLHSTTKIKNG---- 114
L A+S+DRY+AI P++ RT KA+ V IW + ++ +P + + ++++
Sbjct: 215 LTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIEC 274
Query: 115 -----DLAGQWITSFTLCSTL 130
W F +C L
Sbjct: 275 LVEIPTPQDYWGPVFAICIFL 295
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 123 bits (310), Expect = 3e-35
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
+RT NY L+NL++ADLFM L+ ++ FG C + F + ++++
Sbjct: 69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 128
Query: 61 LVAISLDRYMAIMKPLQ-HRSSRTKARISLVVIWLASGLLALPCVLHSTT 109
LV ++++RY+ + KP+ R A + + W+ + A P ++ +
Sbjct: 129 LVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSR 178
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 107 bits (267), Expect = 2e-28
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
M+T TN Y+ NL+LAD F + L WPFG I CK+ I + S+FT
Sbjct: 48 MKTATNIYIFNLALADALA-TSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFT 106
Query: 61 LVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVLHSTTKIKNG 114
L +S+DRY+A+ P++ RT A+I V W+ S + LP + +TTK + G
Sbjct: 107 LCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQG 162
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 99.0 bits (246), Expect = 1e-25
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITV-AASVF 59
++TV NY+L +L+ ADL + VF+ +Y + +WP G + C + + + V ASV
Sbjct: 54 LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDL-WLALDYVVSNASVM 112
Query: 60 TLVAISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALPCVLH 106
L+ IS DRY + KPL + RT + W+ S +L P +L
Sbjct: 113 NLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILF 161
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 97.7 bits (243), Expect = 4e-25
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEIYCKVNYFITNITVAASVF 59
+R++T+ Y ++LS+ADL +F F ++W FG CK + I + + +SV+
Sbjct: 79 LRSMTDKYRLHLSVADL---LFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVW 135
Query: 60 TLVAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVLHSTTKIKNG 114
L ISLDRY+AI+ + R ++ V +W+ + LL +P + + +
Sbjct: 136 ILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD 192
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 97.5 bits (242), Expect = 6e-25
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++ VTNY++V+L+ AD+ + V F + + + C + +S+F+
Sbjct: 52 LQNVTNYFVVSLAAADIAVGVL--AIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFS 109
Query: 61 LVAISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALPCVL 105
L+AI++DRY+AI PL++ T R + W+ S + L +L
Sbjct: 110 LLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML 156
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 96.5 bits (240), Expect = 1e-24
Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTL 61
+TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ TL
Sbjct: 214 QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETL 273
Query: 62 VAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALP 102
I++DRY AI P +++S T KAR+ ++++W+ SGL +
Sbjct: 274 CVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 316
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 96.3 bits (239), Expect = 2e-24
Identities = 35/105 (33%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNIT-VAASVF 59
++TVTNY++ +L+ ADL M + F ++L W FG +C+ + ++ V AS+
Sbjct: 71 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF-WTSIDVLCVTASIE 129
Query: 60 TLVAISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALP 102
TL I++DRY AI P +++S TK + + +++W+ SGL +
Sbjct: 130 TLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 174
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 95.1 bits (236), Expect = 3e-24
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITV-AASVF 59
+ TV N Y+V+LS+ADL + N +Y+L S W G C + + AS+F
Sbjct: 39 LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLF-WLSMDYVASTASIF 97
Query: 60 TLVAISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALP 102
++ + +DRY ++ +PL++ RTK R S + W S L +P
Sbjct: 98 SVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIP 142
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 94.4 bits (234), Expect = 6e-24
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
++ VTNY++V+L+ AD+ + V F + + + C + +S+F+
Sbjct: 62 LQNVTNYFVVSLAAADIAVGVL--AIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFS 119
Query: 61 LVAISLDRYMAIMKPLQHRSSRTKARISL--VVIWLASGLLALP 102
L+AI++DRY+AI PL++ T R + W+ S + L
Sbjct: 120 LLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLT 163
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 93.5 bits (232), Expect = 1e-23
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIY-MLYSHWPFGEIYCKVNYFITNITVAASVF 59
++T N +++NL+ +D ++ N W FG CKV FI I S+
Sbjct: 65 LQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIM 124
Query: 60 TLVAISLDRYMAIMKPLQ--HRSSRTKARISLVVIWLASGLLALPCVLH 106
T+ IS+DRY I +P+ + S +A I ++ +WL S L A+ +
Sbjct: 125 TMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFG 173
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 88.6 bits (220), Expect = 2e-22
Identities = 29/106 (27%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTL 61
+T+TN ++ +L+ ADL + + F ++ W +G C++ + + V AS+ TL
Sbjct: 43 QTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETL 102
Query: 62 VAISLDRYMAIMKPLQHRSSRT--KARISLVVIWLASGLLALPCVL 105
I++DRY+AI P +++S T +A++ + +W S L++ ++
Sbjct: 103 CVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIM 148
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 87.5 bits (216), Expect = 2e-21
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSH-WPFGEIYCKVNYFITNITVAASVF 59
++T TNY +V+L++ADL +A + + W F I C V + + AS++
Sbjct: 69 LQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIW 128
Query: 60 TLVAISLDRYMAIMKPLQHRSSRTK-----ARISLVVIWLASGLLALPCVL 105
L AIS+DRY A++ P+ ++ + + + +W+ + ++ P +
Sbjct: 129 NLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLF 179
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 85.7 bits (211), Expect = 9e-21
Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTL 61
Y++ NL+L+DL V N + + + + + ++ASVF+L
Sbjct: 95 HRPMYYFIGNLALSDLLAGVAY-TANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSL 153
Query: 62 VAISLDRYMAIMKPLQHRS-SRTKARISLVVIWLASGLLALPCVL 105
+AI+++RY+ ++K H + + + + W+ S +L ++
Sbjct: 154 LAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGLPIM 198
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane
protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A
1ho9_A 1hod_A
Length = 32
Score = 41.6 bits (98), Expect = 9e-07
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 56 ASVFTLVAISLDRYMAIMKPLQHRSSRTKAR 86
+S+ L AISLDRY +I + +++ RT R
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 26.8 bits (60), Expect = 2.4
Identities = 2/29 (6%), Positives = 9/29 (31%)
Query: 9 LVNLSLADLFMAVFNCVFNFIYMLYSHWP 37
+ L ++++ + M +
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVK 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.138 0.438
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,944,192
Number of extensions: 99548
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 18
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.3 bits)