RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17210
         (132 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 42.6 bits (99), Expect = 3e-06
 Identities = 23/78 (29%), Positives = 44/78 (56%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT 60
           +RT  NY L+NL++ADLFM            L+ ++ FG   C +  F   +    ++++
Sbjct: 68  LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 127

Query: 61  LVAISLDRYMAIMKPLQH 78
           LV ++++RY+ + KP+ +
Sbjct: 128 LVVLAIERYVVVCKPMSN 145


>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 139

 Score = 26.7 bits (58), Expect = 0.75
 Identities = 10/77 (12%), Positives = 26/77 (33%)

Query: 14  LADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFTLVAISLDRYMAIM 73
           L ++   V   V N I   Y++ P G +   V      + +      +    ++     +
Sbjct: 37  LTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIPDIEEARQPL 96

Query: 74  KPLQHRSSRTKARISLV 90
              +    R+    +++
Sbjct: 97  FTTKPELERSGMGFTIM 113


>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 132

 Score = 24.8 bits (53), Expect = 3.0
 Identities = 8/71 (11%), Positives = 20/71 (28%), Gaps = 1/71 (1%)

Query: 5   TNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEIYCKVNYFITNITVAASVFT-LVA 63
              Y +      + +         +  L      GE+         +  V A     +  
Sbjct: 32  ETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAE 91

Query: 64  ISLDRYMAIMK 74
           IS  ++  +++
Sbjct: 92  ISYKKFRQLIQ 102


>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 448

 Score = 23.9 bits (51), Expect = 8.0
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 7/37 (18%)

Query: 8   YLVNLSLAD------LFMAVFNCVFNFIYMLYSH-WP 37
            L+   L +          VFN      Y  Y + +P
Sbjct: 392 CLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFP 428


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 475,597
Number of extensions: 18687
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 8
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (22.7 bits)