BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17211
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
MRTVTNY+LVNL+ A+ MA FN V NF Y +++ W +G YCK + F V AS+++
Sbjct: 63 MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122
Query: 61 LVAISLDRFV 70
+ A++ DR++
Sbjct: 123 MTAVAFDRYM 132
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
M+T TN Y+ NL+LAD + + F +L WPFG CK I + S FT
Sbjct: 156 MKTATNIYIFNLALADT-LVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFT 214
Query: 61 LVAISLDRFV 70
L A+S+DR+V
Sbjct: 215 LTAMSVDRYV 224
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS++T
Sbjct: 72 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWT 131
Query: 61 LVAISLDRF 69
L I++DR+
Sbjct: 132 LCVIAVDRY 140
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
M+T TN Y+ NL+LAD + + +Y++ S WPFG++ CK+ I + S+FT
Sbjct: 53 MKTATNIYIFNLALADALVTTTMPFQSTVYLMNS-WPFGDVLCKIVLSIDYYNMFTSIFT 111
Query: 61 LVAISLDRFV 70
L +S+DR++
Sbjct: 112 LTMMSVDRYI 121
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
M+T TN Y+ NL+LAD +A F + L WPFG + CK+ I + S+FT
Sbjct: 48 MKTATNIYIFNLALADA-LATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFT 106
Query: 61 LVAISLDRFV 70
L +S+DR++
Sbjct: 107 LCTMSVDRYI 116
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++T TN Y+ NL+LAD +A F L WPFGE+ CK I + S+FT
Sbjct: 45 LKTATNIYIFNLALADA-LATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFT 103
Query: 61 LVAISLDRFV 70
L +S+DR++
Sbjct: 104 LTMMSVDRYI 113
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 65 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 124
Query: 61 LVAISLDRF 69
L I++DR+
Sbjct: 125 LCVIAVDRY 133
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 36 LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET 95
Query: 61 LVAISLDRF 69
L I++DR+
Sbjct: 96 LCVIAVDRY 104
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 41 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 100
Query: 61 LVAISLDRF 69
L I++DR+
Sbjct: 101 LCVIAVDRY 109
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 64 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 123
Query: 61 LVAISLDRF 69
L I++DR+
Sbjct: 124 LCVIAVDRY 132
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 213 LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET 272
Query: 61 LVAISLDRF 69
L I++DR+
Sbjct: 273 LCVIAVDRY 281
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 72 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 131
Query: 61 LVAISLDRF 69
L I++DR+
Sbjct: 132 LCVIAVDRY 140
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ T
Sbjct: 71 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 130
Query: 61 LVAISLDRF 69
L I++DR+
Sbjct: 131 LCVIAVDRY 139
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++TV NY+L +L+ ADL + VF+ +Y + +WP G + C + + + ASV
Sbjct: 54 LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMN 113
Query: 61 LVAISLDRF 69
L+ IS DR+
Sbjct: 114 LLIISFDRY 122
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++TVTNY++ +L+ ADL M + F +L W FG +C+ I + V AS+ T
Sbjct: 40 LQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWTSIDVLCVTASIET 99
Query: 61 LVAISLDRF 69
L I++DR+
Sbjct: 100 LCVIAVDRY 108
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++TV NY+L++L+ ADL + V + Y++ + W G + C + I + ASV
Sbjct: 43 LKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMN 102
Query: 61 LVAISLDRF 69
L+ IS DR+
Sbjct: 103 LLVISFDRY 111
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
+ TV N Y+V+LS+ADL + N +Y+L S W G C + + AS+F+
Sbjct: 39 LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFS 98
Query: 61 LVAISLDRF 69
+ + +DR+
Sbjct: 99 VFILCIDRY 107
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEMYCKVNYFITNITVAASVF 59
+RT NY L+NL++ADLFM VF +Y L+ ++ FG C + F + +++
Sbjct: 69 LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLGGEIALW 127
Query: 60 TLVAISLDRFV 70
+LV ++++R+V
Sbjct: 128 SLVVLAIERYV 138
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEMYCKVNYFITNITVAASVF 59
+RT NY L+NL++ADLFM VF +Y L+ ++ FG C + F + +++
Sbjct: 69 LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 127
Query: 60 TLVAISLDRFV 70
+LV ++++R+V
Sbjct: 128 SLVVLAIERYV 138
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEMYCKVNYFITNITVAASVF 59
+RT NY L+NL++ADLFM VF +Y L+ ++ FG C + F + +++
Sbjct: 68 LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 126
Query: 60 TLVAISLDRFV 70
+LV ++++R+V
Sbjct: 127 SLVVLAIERYV 137
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEMYCKVNYFITNITVAASVF 59
+RT NY L+NL++ADLFM VF +Y L+ ++ FG C + F + +++
Sbjct: 69 LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 127
Query: 60 TLVAISLDRFV 70
+LV ++++R+V
Sbjct: 128 SLVVLAIERYV 138
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEMYCKVNYFITNITVAASVF 59
+RT NY L+NL++ADLFM VF +Y L+ ++ FG C + F + +++
Sbjct: 68 LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 126
Query: 60 TLVAISLDRFV 70
+LV ++++R+V
Sbjct: 127 SLVVLAIERYV 137
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEMYCKVNYFITNITVAASVF 59
+RT NY L+NL++ADLFM VF +Y L+ ++ FG C + F + +++
Sbjct: 69 LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 127
Query: 60 TLVAISLDRFV 70
+LV ++++R+V
Sbjct: 128 SLVVLAIERYV 138
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++T+TN ++ +L+ ADL + + F ++ W +G C++ + + V AS+ T
Sbjct: 42 LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 61 LVAISLDRFV 70
L I++DR++
Sbjct: 102 LCVIAIDRYL 111
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++T+TN ++ +L+ ADL + + F ++ W +G C++ + + V AS+ T
Sbjct: 42 LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 61 LVAISLDRFV 70
L I++DR++
Sbjct: 102 LCVIAIDRYL 111
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
+R++T+ Y ++LS+ADL V F + + ++W FG CK + I + + +SV+
Sbjct: 79 LRSMTDKYRLHLSVADLLF-VITLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWI 136
Query: 61 LVAISLDRFV 70
L ISLDR++
Sbjct: 137 LAFISLDRYL 146
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
+R++T+ Y ++LS+ADL V F + + ++W FG CK + I + + +SV+
Sbjct: 79 LRSMTDKYRLHLSVADLLF-VITLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWI 136
Query: 61 LVAISLDRFV 70
L ISLDR++
Sbjct: 137 LAFISLDRYL 146
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
+R++T+ Y ++LS+ADL V F + + ++W FG CK + I + + +SV+
Sbjct: 79 LRSMTDKYRLHLSVADLLF-VITLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWI 136
Query: 61 LVAISLDRFV 70
L ISLDR++
Sbjct: 137 LAFISLDRYL 146
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYS----HWPFGEMYCKVNYFITNITVAA 56
++T N +++NL+ +D F+ V F M S W FG CKV FI I
Sbjct: 64 LQTPANMFIINLAFSDF---TFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFM 120
Query: 57 SVFTLVAISLDRF 69
S+ T+ IS+DR+
Sbjct: 121 SIMTMAMISIDRY 133
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYS----HWPFGEMYCKVNYFITNITVAA 56
++T N +++NL+ +D F+ V F M S W FG CKV FI I
Sbjct: 65 LQTPANMFIINLAFSDF---TFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFM 121
Query: 57 SVFTLVAISLDRF 69
S+ T+ IS+DR+
Sbjct: 122 SIMTMAMISIDRY 134
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLY---SHWPFGEMYCKVNYFITNITVAAS 57
++T TNY +V+L++ADL +A V ++ L W F + C V + + AS
Sbjct: 69 LQTTTNYLVVSLAVADLLVATL--VMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTAS 126
Query: 58 VFTLVAISLDRF 69
++ L AIS+DR+
Sbjct: 127 IWNLCAISIDRY 138
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEMYCKVNYFITNITVAASVF 59
++ VTNY++V+ + AD+ + V F I + G ++ + F+ +T A+S+F
Sbjct: 37 LQNVTNYFVVSAAAADILVGVLAIPFAIAISTGFCAACHGCLF--IACFVLVLT-ASSIF 93
Query: 60 TLVAISLDRFV 70
+L+AI++DR++
Sbjct: 94 SLLAIAIDRYI 104
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEMYCKVNYFITNITVAASVF 59
++ VTNY++V+L+ AD+ + V F I + G ++ + F+ + +S+F
Sbjct: 37 LQNVTNYFVVSLAAADILVGVLAIPFAITISTGFCAACHGCLF--IACFVL-VLAQSSIF 93
Query: 60 TLVAISLDRFV 70
+L+AI++DR++
Sbjct: 94 SLLAIAIDRYI 104
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEMYCKVNYFITNITVAASVF 59
++ VTNY++V+L+ AD+ + V F I + G ++ + F+ +T +S+F
Sbjct: 37 LQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLF--IACFVLVLT-QSSIF 93
Query: 60 TLVAISLDRFV 70
+L+AI++DR++
Sbjct: 94 SLLAIAIDRYI 104
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEMYCKVNYFITNITVAASVF 59
++ VTNY++V+L+ AD+ + V F I + G ++ + F+ +T +S+F
Sbjct: 62 LQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLF--IACFVLVLT-QSSIF 118
Query: 60 TLVAISLDRFV 70
+L+AI++DR++
Sbjct: 119 SLLAIAIDRYI 129
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 25 VFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFV 70
++NFI+ ++ W FG+ C+ YF+ + A+ + ++S+ R++
Sbjct: 93 LYNFIW-VHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYL 137
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEMYCKVNYFITNITVAASVF 59
++ VTNY++V+L+ AD+ + V F I + G ++ + F+ +T +S+F
Sbjct: 52 LQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLF--IACFVLVLT-QSSIF 108
Query: 60 TLVAISLDRFV 70
+L+AI++DR++
Sbjct: 109 SLLAIAIDRYI 119
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 8 YLVNLSLAD-LFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITN---ITVAASVFTLVA 63
Y+++L+ AD LF++V ++ Y S W FG C+ F+T + AS+ +
Sbjct: 58 YMLHLATADVLFVSVLPFKISY-YFSGSDWQFGSELCR---FVTAAFYCNMYASILLMTV 113
Query: 64 ISLDRFV 70
IS+DRF+
Sbjct: 114 ISIDRFL 120
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 36 WPFGEMYCKVNYFITNITVAASVFTLVAISLDRFV 70
W FG CKV + + + + L IS+DR++
Sbjct: 75 WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYL 109
>pdb|3TDP|A Chain A, Crystal Structure Of Hsc At Ph 4.5
pdb|3TDP|B Chain B, Crystal Structure Of Hsc At Ph 4.5
pdb|3TDP|C Chain C, Crystal Structure Of Hsc At Ph 4.5
pdb|3TDP|D Chain D, Crystal Structure Of Hsc At Ph 4.5
pdb|3TDP|E Chain E, Crystal Structure Of Hsc At Ph 4.5
Length = 257
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 11 NLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYF---ITNITVAASVFTLVAISLD 67
N A + M +F C+F FI + H V+ F I+ +T+ +++ LVA++L
Sbjct: 179 NSDTAKIIM-IFLCLFAFITSGFEHSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLG 237
Query: 68 RFVEA 72
V
Sbjct: 238 NIVGG 242
>pdb|3TDX|A Chain A, Crystal Structure Of Hsc L82v
pdb|3TDX|B Chain B, Crystal Structure Of Hsc L82v
pdb|3TDX|C Chain C, Crystal Structure Of Hsc L82v
pdb|3TDX|D Chain D, Crystal Structure Of Hsc L82v
pdb|3TDX|E Chain E, Crystal Structure Of Hsc L82v
Length = 268
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 11 NLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYF---ITNITVAASVFTLVAISLD 67
N A + M +F C+F FI + H V+ F I+ +T+ +++ LVA++L
Sbjct: 181 NSDTAKIIM-IFLCLFAFITSGFEHSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLG 239
Query: 68 RFVEA 72
V
Sbjct: 240 NIVGG 244
>pdb|3TDO|A Chain A, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDO|B Chain B, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDO|C Chain C, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDO|D Chain D, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDO|E Chain E, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDR|A Chain A, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|B Chain B, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|C Chain C, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|D Chain D, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|E Chain E, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|F Chain F, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|G Chain G, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|H Chain H, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|I Chain I, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|J Chain J, Crystal Structure Of Hsc At Ph 7.5
Length = 268
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 21 VFNCVFNFIYMLYSHWPFGEMYCKVNYF---ITNITVAASVFTLVAISLDRFVEA 72
+F C+F FI + H V+ F I+ +T+ +++ LVA++L V
Sbjct: 190 IFLCLFAFITSGFEHSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGG 244
>pdb|3TE2|A Chain A, Crystal Structure Of Hsc K16s
pdb|3TE2|B Chain B, Crystal Structure Of Hsc K16s
pdb|3TE2|C Chain C, Crystal Structure Of Hsc K16s
pdb|3TE2|D Chain D, Crystal Structure Of Hsc K16s
pdb|3TE2|E Chain E, Crystal Structure Of Hsc K16s
Length = 268
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 21 VFNCVFNFIYMLYSHWPFGEMYCKVNYF---ITNITVAASVFTLVAISLDRFVEA 72
+F C+F FI + H V+ F I+ +T+ +++ LVA++L V
Sbjct: 190 IFLCLFAFITSGFEHSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGG 244
>pdb|3TE1|A Chain A, Crystal Structure Of Hsc T84a
pdb|3TE1|B Chain B, Crystal Structure Of Hsc T84a
pdb|3TE1|C Chain C, Crystal Structure Of Hsc T84a
pdb|3TE1|D Chain D, Crystal Structure Of Hsc T84a
pdb|3TE1|E Chain E, Crystal Structure Of Hsc T84a
Length = 268
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 21 VFNCVFNFIYMLYSHWPFGEMYCKVNYF---ITNITVAASVFTLVAISLDRFVEA 72
+F C+F FI + H V+ F I+ +T+ +++ LVA++L V
Sbjct: 190 IFLCLFAFITSGFEHSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGG 244
>pdb|3TE0|A Chain A, Crystal Structure Of Hsc K148e
pdb|3TE0|B Chain B, Crystal Structure Of Hsc K148e
pdb|3TE0|C Chain C, Crystal Structure Of Hsc K148e
pdb|3TE0|D Chain D, Crystal Structure Of Hsc K148e
pdb|3TE0|E Chain E, Crystal Structure Of Hsc K148e
Length = 268
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 21 VFNCVFNFIYMLYSHWPFGEMYCKVNYF---ITNITVAASVFTLVAISLDRFVEA 72
+F C+F FI + H V+ F I+ +T+ +++ LVA++L V
Sbjct: 190 IFLCLFAFITSGFEHSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGG 244
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 17 LFMAVFNCVFNFIYMLYSHWPFG 39
+F + NC+ +F Y +HW F
Sbjct: 19 VFAIIKNCILSFKYQSPNHWEFA 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.335 0.142 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,693,304
Number of Sequences: 62578
Number of extensions: 47485
Number of successful extensions: 153
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 57
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 45 (21.9 bits)