RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17211
(72 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 97.8 bits (244), Expect = 2e-26
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
MRTVTNY+LVNL+ A+ MA FN V NF Y +++ W +G YCK + F V AS+++
Sbjct: 63 MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122
Query: 61 LVAISLDRFV 70
+ A++ DR++
Sbjct: 123 MTAVAFDRYM 132
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 86.7 bits (215), Expect = 2e-22
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
+RT NY L+NL++ADLFM L+ ++ FG C + F + ++++
Sbjct: 69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 128
Query: 61 LVAISLDRFV 70
LV ++++R+V
Sbjct: 129 LVVLAIERYV 138
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 85.6 bits (212), Expect = 7e-22
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
M+T TN Y+ NL+LAD + + F +L WPFG CK I + S FT
Sbjct: 156 MKTATNIYIFNLALADT-LVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFT 214
Query: 61 LVAISLDRFV 70
L A+S+DR+V
Sbjct: 215 LTAMSVDRYV 224
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 71.2 bits (174), Expect = 1e-16
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
M+T TN Y+ NL+LAD F + L WPFG + CK+ I + S+FT
Sbjct: 48 MKTATNIYIFNLALADALA-TSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFT 106
Query: 61 LVAISLDRFV 70
L +S+DR++
Sbjct: 107 LCTMSVDRYI 116
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 68.8 bits (168), Expect = 8e-16
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIY-MLYSHWPFGEMYCKVNYFITNITVAASVF 59
++T N +++NL+ +D ++ N W FG CKV FI I S+
Sbjct: 65 LQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIM 124
Query: 60 TLVAISLDRFV 70
T+ IS+DR+
Sbjct: 125 TMAMISIDRYN 135
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 67.2 bits (164), Expect = 2e-15
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTL 61
+TVTNY++ +L+ ADL M + F ++L W FG +C+ I + V AS+ TL
Sbjct: 214 QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETL 273
Query: 62 VAISLDRFV 70
I++DR+
Sbjct: 274 CVIAVDRYF 282
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 66.7 bits (162), Expect = 4e-15
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++ VTNY++V+L+ AD+ + V F + + + C + +S+F+
Sbjct: 52 LQNVTNYFVVSLAAADIAVGVL--AIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFS 109
Query: 61 LVAISLDRF 69
L+AI++DR+
Sbjct: 110 LLAIAIDRY 118
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 66.3 bits (161), Expect = 6e-15
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITV-AASVF 59
++TV NY+L +L+ ADL + VF+ +Y + +WP G + C + + + V ASV
Sbjct: 54 LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDL-WLALDYVVSNASVM 112
Query: 60 TLVAISLDRF 69
L+ IS DR+
Sbjct: 113 NLLIISFDRY 122
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 66.3 bits (161), Expect = 6e-15
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNIT-VAASVF 59
++TVTNY++ +L+ ADL M + F ++L W FG +C+ + ++ V AS+
Sbjct: 71 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF-WTSIDVLCVTASIE 129
Query: 60 TLVAISLDRF 69
TL I++DR+
Sbjct: 130 TLCVIAVDRY 139
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 64.7 bits (157), Expect = 2e-14
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITV-AASVF 59
+ TV N Y+V+LS+ADL + N +Y+L S W G C + + AS+F
Sbjct: 39 LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLF-WLSMDYVASTASIF 97
Query: 60 TLVAISLDRF 69
++ + +DR+
Sbjct: 98 SVFILCIDRY 107
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 62.8 bits (152), Expect = 1e-13
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
++ VTNY++V+L+ AD+ + V F + + + C + +S+F+
Sbjct: 62 LQNVTNYFVVSLAAADIAVGVL--AIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFS 119
Query: 61 LVAISLDRF 69
L+AI++DR+
Sbjct: 120 LLAIAIDRY 128
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 62.0 bits (151), Expect = 2e-13
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTL 61
+T+TN ++ +L+ ADL + + F ++ W +G C++ + + V AS+ TL
Sbjct: 43 QTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETL 102
Query: 62 VAISLDRFV 70
I++DR++
Sbjct: 103 CVIAIDRYL 111
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 61.0 bits (147), Expect = 5e-13
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTL 61
Y++ NL+L+DL V N + + + + + ++ASVF+L
Sbjct: 95 HRPMYYFIGNLALSDLLAGVAY-TANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSL 153
Query: 62 VAISLDRFV 70
+AI+++R++
Sbjct: 154 LAIAIERYI 162
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 60.3 bits (146), Expect = 9e-13
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEMYCKVNYFITNITVAASVF 59
+R++T+ Y ++LS+ADL +F F ++W FG CK + I + + +SV+
Sbjct: 79 LRSMTDKYRLHLSVADL---LFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVW 135
Query: 60 TLVAISLDRFV 70
L ISLDR++
Sbjct: 136 ILAFISLDRYL 146
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 59.8 bits (144), Expect = 1e-12
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSH-WPFGEMYCKVNYFITNITVAASVF 59
++T TNY +V+L++ADL +A + + W F + C V + + AS++
Sbjct: 69 LQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIW 128
Query: 60 TLVAISLDRF 69
L AIS+DR+
Sbjct: 129 NLCAISIDRY 138
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane
protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A
1ho9_A 1hod_A
Length = 32
Score = 25.1 bits (55), Expect = 0.61
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 56 ASVFTLVAISLDRF 69
+S+ L AISLDR+
Sbjct: 2 SSIVHLCAISLDRY 15
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 26.4 bits (59), Expect = 0.84
Identities = 2/29 (6%), Positives = 9/29 (31%)
Query: 9 LVNLSLADLFMAVFNCVFNFIYMLYSHWP 37
+ L ++++ + M +
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVK 162
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane
protein, B-octyl-glucoside, isomerase, steroid
biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP:
a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Length = 732
Score = 24.0 bits (51), Expect = 5.8
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 1/21 (4%)
Query: 18 FMAVFNCVFNFIYMLYSH-WP 37
VFN Y Y + +P
Sbjct: 692 IAGVFNKSCAISYTSYRNIFP 712
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.335 0.142 0.448
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,079,124
Number of extensions: 47822
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 21
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 51 (23.9 bits)