RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17211
         (72 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 33.8 bits (76), Expect = 7e-04
 Identities = 21/70 (30%), Positives = 39/70 (55%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           +RT  NY L+NL++ADLFM            L+ ++ FG   C +  F   +    ++++
Sbjct: 68  LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 127

Query: 61  LVAISLDRFV 70
           LV ++++R+V
Sbjct: 128 LVVLAIERYV 137


>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
          N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 132

 Score = 24.4 bits (52), Expect = 1.4
 Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 1/68 (1%)

Query: 5  TNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT-LVA 63
             Y +      + +         +  L      GE+         +  V A     +  
Sbjct: 32 ETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAE 91

Query: 64 ISLDRFVE 71
          IS  +F +
Sbjct: 92 ISYKKFRQ 99


>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 448

 Score = 24.3 bits (52), Expect = 1.5
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 7/37 (18%)

Query: 8   YLVNLSLAD------LFMAVFNCVFNFIYMLYSH-WP 37
            L+   L +          VFN      Y  Y + +P
Sbjct: 392 CLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFP 428


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.335    0.142    0.448 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 264,380
Number of extensions: 9401
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 8
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 47 (22.3 bits)