BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17212
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z1T|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
pdb|2Z1U|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
In Complex With Atp
Length = 343
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 23 THKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPGKYLSCGLY 82
T DAA + T P+ S Y + G G + + + DV+M +YLSCG
Sbjct: 38 TLNDAARLDLTGPLAMSTDSYTVDPIFFPGGDIGTLAVHGTVNDVSMLGARPRYLSCGFI 97
Query: 83 FE 84
E
Sbjct: 98 LE 99
>pdb|2YYO|A Chain A, Crystal Sturcture Of Human Spry Domain
Length = 171
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 44 YFEVKIVSKGRDGYMGIGLSAQDVNMNRLPG 74
YFEV IV G G + +GL Q +++ PG
Sbjct: 42 YFEVSIVDSGVRGTIAVGLVPQYYSLDHQPG 72
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 12 TSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNR 71
T VI G HGK D + A +VK + + +DG + + +D +
Sbjct: 210 TEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKL 269
Query: 72 LPGKYLSCGLYF 83
L K +SC F
Sbjct: 270 LATKEISCRYLF 281
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 12 TSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNR 71
T VI G HGK D + A +VK + + +DG + + +D +
Sbjct: 210 TEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKL 269
Query: 72 LPGKYLSCGLYF 83
L K +SC F
Sbjct: 270 LATKEISCRYLF 281
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 12 TSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNR 71
T VI G HGK D + A +VK + + +DG + + +D +
Sbjct: 210 TEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKL 269
Query: 72 LPGKYLSCGLYF 83
L K +SC F
Sbjct: 270 LATKEISCRYLF 281
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 12 TSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNR 71
T VI G HGK D + A +VK + + +DG + + +D +
Sbjct: 210 TEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKL 269
Query: 72 LPGKYLSCGLYF 83
L K +SC F
Sbjct: 270 LATKEISCRYLF 281
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 12 TSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNR 71
T VI G HGK D + A +VK + + +DG + + +D +
Sbjct: 210 TEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKL 269
Query: 72 LPGKYLSCGLYF 83
L K +SC F
Sbjct: 270 LATKEISCRYLF 281
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 12 TSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNR 71
T VI G HGK D + A +VK + + +DG + + +D +
Sbjct: 210 TEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKL 269
Query: 72 LPGKYLSCGLYF 83
L K +SC F
Sbjct: 270 LATKEISCRYLF 281
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 12 TSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNR 71
T VI G HGK D + A +VK + + +DG + + +D +
Sbjct: 210 TEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKL 269
Query: 72 LPGKYLSCGLYF 83
L K +SC F
Sbjct: 270 LATKEISCRYLF 281
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 12 TSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNR 71
T VI G HGK D + A +VK + + +DG + + +D +
Sbjct: 212 TEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKL 271
Query: 72 LPGKYLSCGLYF 83
L K +SC F
Sbjct: 272 LATKEISCRYLF 283
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 12 TSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNR 71
T VI G HGK D + A +VK + + +DG + + +D +
Sbjct: 208 TEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKL 267
Query: 72 LPGKYLSCGLYF 83
L K +SC F
Sbjct: 268 LATKEISCRYLF 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,148,466
Number of Sequences: 62578
Number of extensions: 112161
Number of successful extensions: 167
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 12
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)