Query psy17212
Match_columns 102
No_of_seqs 107 out of 262
Neff 5.7
Searched_HMMs 46136
Date Sat Aug 17 00:44:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1477|consensus 98.8 4.1E-09 9E-14 87.3 4.0 83 3-85 40-123 (469)
2 smart00449 SPRY Domain in SPla 98.3 1.2E-06 2.6E-11 58.3 5.1 58 41-101 2-74 (122)
3 PF00622 SPRY: SPRY domain; I 97.8 3E-05 6.4E-10 51.2 4.4 58 41-101 2-75 (124)
4 KOG2626|consensus 97.4 0.00034 7.3E-09 59.1 6.0 69 6-81 303-371 (544)
5 KOG4030|consensus 97.2 0.00073 1.6E-08 49.9 5.1 47 30-81 55-102 (197)
6 PF07177 Neuralized: Neuralize 95.0 0.12 2.7E-06 32.5 6.0 57 4-66 10-68 (69)
7 KOG4367|consensus 94.3 0.18 3.8E-06 42.9 6.9 88 7-100 546-648 (699)
8 smart00588 NEUZ domain in neur 87.4 4.7 0.0001 27.8 7.2 57 4-65 10-68 (123)
9 KOG0349|consensus 69.3 4.3 9.3E-05 35.0 2.6 64 4-74 97-160 (725)
10 KOG4030|consensus 65.0 5.2 0.00011 29.8 2.0 46 46-102 39-84 (197)
11 PF10989 DUF2808: Protein of u 61.5 43 0.00092 23.4 6.2 29 27-55 105-133 (146)
12 KOG3953|consensus 48.1 47 0.001 26.0 4.9 71 7-81 39-114 (242)
13 PRK15095 FKBP-type peptidyl-pr 46.1 38 0.00081 24.1 3.9 26 25-52 118-143 (156)
14 PRK10737 FKBP-type peptidyl-pr 45.8 35 0.00077 25.5 3.8 26 25-52 114-139 (196)
15 PF14804 Jag_N: Jag N-terminus 42.0 18 0.00039 21.5 1.4 17 45-61 25-41 (52)
16 smart00664 DoH Possible catech 41.0 50 0.0011 22.3 3.8 23 42-65 15-37 (148)
17 PF07933 DUF1681: Protein of u 40.9 22 0.00047 26.0 2.0 25 41-65 83-108 (160)
18 PF03351 DOMON: DOMON domain; 30.0 82 0.0018 20.3 3.3 22 43-65 18-39 (124)
19 KOG4625|consensus 28.7 80 0.0017 27.7 3.7 62 6-72 303-366 (595)
20 COG2379 GckA Putative glycerat 26.8 64 0.0014 27.1 2.8 32 10-41 63-95 (422)
21 COG0851 MinE Septum formation 26.4 85 0.0019 20.9 2.8 34 4-40 51-84 (88)
22 PF04217 DUF412: Protein of un 25.1 5.3 0.00011 28.8 -3.4 19 30-48 85-103 (143)
23 COG3092 Uncharacterized protei 25.0 5.1 0.00011 28.8 -3.4 18 31-48 91-108 (149)
24 PF07657 MNNL: N terminus of N 24.9 2E+02 0.0042 18.5 4.5 56 44-101 4-66 (77)
25 PRK01816 hypothetical protein; 24.4 5.6 0.00012 28.7 -3.3 18 31-48 85-102 (143)
26 PF00608 Adeno_shaft: Adenovir 23.4 77 0.0017 16.5 1.8 17 5-21 10-26 (30)
27 cd06900 lectin_VcfQ VcfQ bacte 23.3 3.8E+02 0.0081 21.2 6.6 85 11-102 31-122 (255)
28 PF09465 LBR_tudor: Lamin-B re 23.3 1.2E+02 0.0026 18.4 2.9 21 28-52 10-30 (55)
29 PRK10380 hypothetical protein; 23.1 1.2E+02 0.0026 18.9 2.9 17 24-40 24-40 (63)
30 PF11113 Phage_head_chap: Head 22.3 1.3E+02 0.0029 18.4 2.9 21 41-65 16-36 (56)
31 COG1047 SlpA FKBP-type peptidy 21.8 1.5E+02 0.0033 21.9 3.7 25 26-52 116-140 (174)
32 COG3212 Predicted membrane pro 21.8 1E+02 0.0022 21.9 2.7 17 40-56 109-126 (144)
33 PF14469 AKAP28: 28 kDa A-kina 20.8 1.2E+02 0.0026 21.1 2.8 43 32-74 58-101 (122)
No 1
>KOG1477|consensus
Probab=98.80 E-value=4.1e-09 Score=87.29 Aligned_cols=83 Identities=22% Similarity=0.317 Sum_probs=71.8
Q ss_pred CceeeEEeCCeeEEEe-ccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCCCccCCCccCCcEE
Q psy17212 3 NCYKRELSQTSVIIGL-GHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPGKYLSCGL 81 (102)
Q Consensus 3 ~~~~l~vs~d~l~~~~-g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~l~R~PGw~~~s~~ 81 (102)
.|.+..+++|..++.. .......|+++++|++|+|.++++||||+.|++.+..+.|+||+....+++++.|||..++++
T Consensus 40 ~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g~~~~i~i~~~~~~~~~~~~~g~~~~s~~ 119 (469)
T KOG1477|consen 40 SDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYGIEGRIKIGFLIDSFSIIESEGYTMNSLG 119 (469)
T ss_pred ceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhhhhhceEEEEEecccccccccchhhhhhc
Confidence 4566677888887773 443346799999999999999999999999999999999999999999999999999999888
Q ss_pred EEEe
Q psy17212 82 YFEV 85 (102)
Q Consensus 82 Yfe~ 85 (102)
|+-.
T Consensus 120 y~g~ 123 (469)
T KOG1477|consen 120 YHGN 123 (469)
T ss_pred ccCC
Confidence 7543
No 2
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=98.32 E-value=1.2e-06 Score=58.27 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=44.6
Q ss_pred CceEEEEEEEecCCCCeEEEeccCCCCC--CccCCCccCCcEEEEEee---ee---------ecc-CCCeeeeeec
Q psy17212 41 GLYYFEVKIVSKGRDGYMGIGLSAQDVN--MNRLPGKYLSCGLYFEVK---IV---------SKG-WDGYMGIGMS 101 (102)
Q Consensus 41 ~vyYFEV~Il~~g~~~~i~IG~~~~~~~--l~R~PGw~~~s~~Yfe~~---~~---------~~~-~~~~~G~G~~ 101 (102)
+.|||||+|.+ ++.+.||++.+.++ ..+.+||+..||+|.-.+ .. .-. .+..+|++|.
T Consensus 2 G~~YwEV~v~~---~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~~~gd~iGv~lD 74 (122)
T smart00449 2 GRHYFEVEIFD---GGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQEPGDVIGCFLD 74 (122)
T ss_pred CcEEEEEEEcC---CCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCccccCCCCEEEEEEE
Confidence 67999999985 56899999999998 689999999999875543 10 002 3777888773
No 3
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=97.83 E-value=3e-05 Score=51.16 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=43.7
Q ss_pred CceEEEEEEEecCCCCeEEEeccCCCC---CCccCCCccCCcEEEEEee---eee---------ccC-CCeeeeeec
Q psy17212 41 GLYYFEVKIVSKGRDGYMGIGLSAQDV---NMNRLPGKYLSCGLYFEVK---IVS---------KGW-DGYMGIGMS 101 (102)
Q Consensus 41 ~vyYFEV~Il~~g~~~~i~IG~~~~~~---~l~R~PGw~~~s~~Yfe~~---~~~---------~~~-~~~~G~G~~ 101 (102)
+.|||||+|.+... +.||+++++. ....+.|+++.+|+|.... ... -.. +..+|++|.
T Consensus 2 G~~YwEV~v~~~~~---~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIG~~lD 75 (124)
T PF00622_consen 2 GKHYWEVEVDSGGS---ISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQEPGDVIGCGLD 75 (124)
T ss_dssp SEEEEEEEETGGCT---EEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSCTSSTTTSEEEEEEE
T ss_pred cCEEEEEEEecCcC---EEEEEeECccccCCccccCCccccceeeeccccccceeecccccccccccCCcEEEEEEe
Confidence 67999999987665 9999999999 6778999999999976543 111 123 788888773
No 4
>KOG2626|consensus
Probab=97.42 E-value=0.00034 Score=59.13 Aligned_cols=69 Identities=22% Similarity=0.212 Sum_probs=60.2
Q ss_pred eeEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCCCccCCCccCCcEE
Q psy17212 6 KRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPGKYLSCGL 81 (102)
Q Consensus 6 ~l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~l~R~PGw~~~s~~ 81 (102)
.|.||+|.|+++. +..-.-|||+|-+-... .||||+|.+.+....+=||.+....+|....|.+.-|++
T Consensus 303 ql~Is~drlt~tg-----eKGy~MvRAshgv~~G~--WYFEI~vd~~pd~~a~RlGwsq~~g~LqApvGYdkfsY~ 371 (544)
T KOG2626|consen 303 QLKISEDRLTATG-----EKGYRMVRASHGVLEGA--WYFEIKVDEMPDDAAIRLGWSQLYGNLQAPVGYDKFSYG 371 (544)
T ss_pred cccccccceeeec-----ccceeeeeecccccccc--eeEEEEeecCCCccceeeecccccccccccccccccccc
Confidence 4788999999993 35577899999988766 999999999988889999999999999999999988755
No 5
>KOG4030|consensus
Probab=97.22 E-value=0.00073 Score=49.94 Aligned_cols=47 Identities=34% Similarity=0.487 Sum_probs=37.3
Q ss_pred EEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCCCccCCC-ccCCcEE
Q psy17212 30 VRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPG-KYLSCGL 81 (102)
Q Consensus 30 vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~l~R~PG-w~~~s~~ 81 (102)
+-|--|+--+- -||||+|.. .+..+||+++++.+|+|-|| .+..||.
T Consensus 55 ~lAtaPlvQnK--sYFevkiQ~---tG~WgiGlat~q~~l~~~p~g~d~~sw~ 102 (197)
T KOG4030|consen 55 ALATAPLVQNK--SYFEVKIQQ---TGTWGIGLATKQSPLDKVPGGCDEKSWG 102 (197)
T ss_pred eeeeeeeeccc--ceEEEEEee---cceeeeeeeeccCccccCCCCCcceeEE
Confidence 34555665555 899999974 56899999999999999997 7777765
No 6
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=95.03 E-value=0.12 Score=32.49 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=32.9
Q ss_pred ceeeEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEe--cCCCCeEEEeccCCC
Q psy17212 4 CYKRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVS--KGRDGYMGIGLSAQD 66 (102)
Q Consensus 4 ~~~l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~--~g~~~~i~IG~~~~~ 66 (102)
..++.|++|..++.. . ..-.-+.|.+++||.... -|||+|.+ ..-.|.+.|||++.+
T Consensus 10 G~nV~L~~~~~~A~R--~-~sf~~giVFS~rPl~~~E---~~~v~I~~~~~~wsG~L~~GvT~~~ 68 (69)
T PF07177_consen 10 GKNVRLSNDGTVARR--V-SSFNNGIVFSSRPLRIGE---KFEVRIDEVEPSWSGSLRIGVTSCD 68 (69)
T ss_dssp -TTEEE-SSS-EEEE--S-T-SSS-EEEESS-B-TT----EEEEEEEEE-SSSSS--EEEEESS-
T ss_pred CCCEEEcCCCeEEEe--c-ccCCceEEEecCCccCCC---EEEEEEEecCCCceeEEEEeeEccC
Confidence 457899999999985 1 223347999999998865 45555554 445678999998753
No 7
>KOG4367|consensus
Probab=94.33 E-value=0.18 Score=42.88 Aligned_cols=88 Identities=22% Similarity=0.250 Sum_probs=54.9
Q ss_pred eEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCCCccCCCccCCc-------
Q psy17212 7 RELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPGKYLSC------- 79 (102)
Q Consensus 7 l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~l~R~PGw~~~s------- 79 (102)
+.+|++-+++. |.+ -|-.+|-. .|.-.-+|+||||+|-.-..+.-|.||++.-...-+-+-|-+-+-
T Consensus 546 milsnecatls---gss-leyrtilg--siafskgvhywevtidrhdgnsdivigvaqpavnrnvmlgkdlhgwsmyvdg 619 (699)
T KOG4367|consen 546 MILSNECATLS---GSS-LEYRTILG--SIAFSKGVHYWEVTIDRHDGNSDIVIGVAQPAVNRNVMLGKDLHGWSMYVDG 619 (699)
T ss_pred eeeecccceec---ccc-cchheeee--ecccccceeEEEEEEeccCCCCCceEEecchhhhhceeecccccceeEEEcC
Confidence 45666666666 433 33333332 233344789999999888888889999988776666665554443
Q ss_pred ---EEEEEeee-----eeccCCCeeeeee
Q psy17212 80 ---GLYFEVKI-----VSKGWDGYMGIGM 100 (102)
Q Consensus 80 ---~~Yfe~~~-----~~~~~~~~~G~G~ 100 (102)
|..|+.++ .|-.+|-.+|+=|
T Consensus 620 erswylhnethhnrvlggvtrgtvigvrl 648 (699)
T KOG4367|consen 620 ERSWYLHNETHHNRVLGGVTRGTVIGVRL 648 (699)
T ss_pred cceeEEeccccccccccccccccEEEEEE
Confidence 33333333 2336777777754
No 8
>smart00588 NEUZ domain in neuralized proteins.
Probab=87.44 E-value=4.7 Score=27.80 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=40.2
Q ss_pred ceeeEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEE--ecCCCCeEEEeccCC
Q psy17212 4 CYKRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIV--SKGRDGYMGIGLSAQ 65 (102)
Q Consensus 4 ~~~l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il--~~g~~~~i~IG~~~~ 65 (102)
.+++.|++|+.++..- .++-.-+.|.+++||-... . |+|+|. ...-.+.+.+||++.
T Consensus 10 G~ni~l~~~~~~A~R~--~~~f~~givFS~rPl~~~E-~--~~v~i~~~~~~w~G~l~~G~Ts~ 68 (123)
T smart00588 10 GSNIRLSDSGRVARRS--ASDFCNALVFSARPLRINE-L--FEVKIEKVVRKWSGALRFGVTTC 68 (123)
T ss_pred CCCeEECCCCcEEEcc--cCCcCceEEecCCCCcCCC-E--EEEEEEEecCCccCceEEEEecC
Confidence 4678999999999842 1212347999999998765 3 355554 455567899999875
No 9
>KOG0349|consensus
Probab=69.28 E-value=4.3 Score=34.99 Aligned_cols=64 Identities=23% Similarity=0.361 Sum_probs=38.4
Q ss_pred ceeeEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCCCccCCC
Q psy17212 4 CYKRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPG 74 (102)
Q Consensus 4 ~~~l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~l~R~PG 74 (102)
.++|.|.+|+|.-.. +.-.++--.||-.-+ ...+-|||||+|.++| -+-+|.++..++|+-.-|
T Consensus 97 g~alaI~~dGL~CqS---re~KeWhGcRaT~Gl-~gkGK~YyEvtitd~G---LCRVGWsT~qasLdlGt~ 160 (725)
T KOG0349|consen 97 GLALAIDEDGLACQS---REKKEWHGCRATAGL-YGKGKYYYEVTITDKG---LCRVGWSTLQASLDLGTG 160 (725)
T ss_pred CceeeEcCCccccch---hHHhhhhcccccccc-ccCceEEEEEEeccCc---eeeechhhcccccccCcc
Confidence 357788888887761 111122122332221 2246799999998654 566888888888775444
No 10
>KOG4030|consensus
Probab=64.97 E-value=5.2 Score=29.81 Aligned_cols=46 Identities=33% Similarity=0.519 Sum_probs=28.0
Q ss_pred EEEEEecCCCCeEEEeccCCCCCCccCCCccCCcEEEEEeeeeeccCCCeeeeeecC
Q psy17212 46 EVKIVSKGRDGYMGIGLSAQDVNMNRLPGKYLSCGLYFEVKIVSKGWDGYMGIGMSA 102 (102)
Q Consensus 46 EV~Il~~g~~~~i~IG~~~~~~~l~R~PGw~~~s~~Yfe~~~~~~~~~~~~G~G~~~ 102 (102)
.|-|+..++. ..++|=+-..+||.. +-.|||+++ -.+++|||||.+
T Consensus 39 dVvilk~g~R-icGtGG~lAtaPlvQ-------nKsYFevki---Q~tG~WgiGlat 84 (197)
T KOG4030|consen 39 DVVILKEGER-ICGTGGALATAPLVQ-------NKSYFEVKI---QQTGTWGIGLAT 84 (197)
T ss_pred cEEEEecCcE-EeccCceeeeeeeec-------ccceEEEEE---eecceeeeeeee
Confidence 3445543322 234555555566543 346999998 467899999853
No 11
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=61.49 E-value=43 Score=23.41 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEEeCCCcCCCCCceEEEEEEEecCCC
Q psy17212 27 AASVRATHPIPPSCGLYYFEVKIVSKGRD 55 (102)
Q Consensus 27 ~~~vran~Pip~~~~vyYFEV~Il~~g~~ 55 (102)
+..+-.+---|...++|+|+++....|.+
T Consensus 105 v~V~l~~v~NP~~~G~Y~f~v~a~p~G~~ 133 (146)
T PF10989_consen 105 VTVVLSPVRNPRSGGTYQFNVTAFPPGDN 133 (146)
T ss_pred EEEEEEeeeCCCCCCeEEEEEEEECCCCC
Confidence 44444444456666889999988877766
No 12
>KOG3953|consensus
Probab=48.12 E-value=47 Score=25.95 Aligned_cols=71 Identities=10% Similarity=0.034 Sum_probs=44.8
Q ss_pred eEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCCCc-----cCCCccCCcEE
Q psy17212 7 RELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMN-----RLPGKYLSCGL 81 (102)
Q Consensus 7 l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~l~-----R~PGw~~~s~~ 81 (102)
....+|++++...+--.-+ ..+|...-.. .+.++|||.--........-||.+++.+||. ++-|-+..||+
T Consensus 39 ~vk~~~~~tfhrhpvaqst--d~~rGk~g~~--~g~h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLlGs~~qswG 114 (242)
T KOG3953|consen 39 FVKLPDGLTFHRHPVAQST--DGIRGKRGYS--RGRHAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALLGSNSQSWG 114 (242)
T ss_pred EEecCCcceEEecCCcccc--ccccceeeec--cCceEEEEEecCCccCCcceEEEEcccCchhhhHHHHHhCCCCCccc
Confidence 3455677888743321111 1233333333 3559999998776666667789999999884 67777777766
No 13
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=46.13 E-value=38 Score=24.11 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=21.9
Q ss_pred CcEEEEEeCCCcCCCCCceEEEEEEEec
Q psy17212 25 KDAASVRATHPIPPSCGLYYFEVKIVSK 52 (102)
Q Consensus 25 ~d~~~vran~Pip~~~~vyYFEV~Il~~ 52 (102)
.+-..|-.|||+.=+. ..|||+|++.
T Consensus 118 ~~~v~vD~NHPLAGk~--L~f~v~i~~v 143 (156)
T PRK15095 118 GDSITVDFNHPLAGQT--VHFDIEVLEI 143 (156)
T ss_pred CCEEEEECCCcCCCCE--EEEEEEEEEe
Confidence 4567888999999888 9999999874
No 14
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=45.81 E-value=35 Score=25.52 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCcCCCCCceEEEEEEEec
Q psy17212 25 KDAASVRATHPIPPSCGLYYFEVKIVSK 52 (102)
Q Consensus 25 ~d~~~vran~Pip~~~~vyYFEV~Il~~ 52 (102)
.|-..|-.|||+.=+. ..|+|+|++.
T Consensus 114 ~d~V~vD~NHPLAG~~--L~F~veV~~v 139 (196)
T PRK10737 114 DDHVVVDGNHMLAGQN--LKFNVEVVAI 139 (196)
T ss_pred CCEEEEECCCcCCCCE--EEEEEEEEEe
Confidence 4578899999999888 9999999874
No 15
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=41.95 E-value=18 Score=21.47 Aligned_cols=17 Identities=29% Similarity=0.991 Sum_probs=7.1
Q ss_pred EEEEEEecCCCCeEEEe
Q psy17212 45 FEVKIVSKGRDGYMGIG 61 (102)
Q Consensus 45 FEV~Il~~g~~~~i~IG 61 (102)
.|++|++.++++.+++|
T Consensus 25 ~~~eVi~~g~kGf~G~g 41 (52)
T PF14804_consen 25 LEYEVIEEGKKGFFGFG 41 (52)
T ss_dssp EEEEEEE--B-------
T ss_pred EEEEEEEcCCCcEEeec
Confidence 58999999999988765
No 16
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=40.97 E-value=50 Score=22.29 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=16.3
Q ss_pred ceEEEEEEEecCCCCeEEEeccCC
Q psy17212 42 LYYFEVKIVSKGRDGYMGIGLSAQ 65 (102)
Q Consensus 42 vyYFEV~Il~~g~~~~i~IG~~~~ 65 (102)
--+||++-.... ++.++|||+..
T Consensus 15 ~v~~~l~~~~~~-~gwvaiGfs~~ 37 (148)
T smart00664 15 SIAFELSGPTST-NGWVAIGFSPD 37 (148)
T ss_pred eEEEEEEEecCC-CCEEEEEECCC
Confidence 367777654222 88999999886
No 17
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=40.87 E-value=22 Score=26.03 Aligned_cols=25 Identities=28% Similarity=0.743 Sum_probs=17.6
Q ss_pred CceEEEEEEEec-CCCCeEEEeccCC
Q psy17212 41 GLYYFEVKIVSK-GRDGYMGIGLSAQ 65 (102)
Q Consensus 41 ~vyYFEV~Il~~-g~~~~i~IG~~~~ 65 (102)
+--||=+.|.+. |+...|+|||...
T Consensus 83 SSRYFvlRv~d~~Gr~AfiGiGF~eR 108 (160)
T PF07933_consen 83 SSRYFVLRVQDPSGRHAFIGIGFRER 108 (160)
T ss_dssp --S-EEEEEEETTTEEEEEEEE-S-H
T ss_pred ccceEEEEEEcCCCcEEEEEEeeccc
Confidence 458999999987 7888999999764
No 18
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=30.04 E-value=82 Score=20.29 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=15.1
Q ss_pred eEEEEEEEecCCCCeEEEeccCC
Q psy17212 43 YYFEVKIVSKGRDGYMGIGLSAQ 65 (102)
Q Consensus 43 yYFEV~Il~~g~~~~i~IG~~~~ 65 (102)
.+||++-... ..+.++|||+..
T Consensus 18 i~~~l~~~~~-~~~w~aiGfs~~ 39 (124)
T PF03351_consen 18 IEFELTGPAN-TNGWVAIGFSDD 39 (124)
T ss_pred EEEEEEeccC-CCCEEEEEEccc
Confidence 5666663322 388999999983
No 19
>KOG4625|consensus
Probab=28.70 E-value=80 Score=27.69 Aligned_cols=62 Identities=23% Similarity=0.339 Sum_probs=0.0
Q ss_pred eeEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEecCC--CCeEEEeccCCCCCCccC
Q psy17212 6 KRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGR--DGYMGIGLSAQDVNMNRL 72 (102)
Q Consensus 6 ~l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~g~--~~~i~IG~~~~~~~l~R~ 72 (102)
++.|++|+.++..-.+. ...+.|++++|+-..+ -|||++....+ .+++++|+.+.+-..-|.
T Consensus 303 nv~l~~d~tvA~r~~~~--~s~glVFterPlr~~e---~~~Ikv~~v~~l~~G~L~lGvT~~dpg~l~p 366 (595)
T KOG4625|consen 303 NVRLSDDGTVARREHGA--YSQGLVFTERPLRVGE---KLEIKVTRVGRLYAGALSLGVTTCDPGTLRP 366 (595)
T ss_pred cccccCCCccccccccc--ccceEEEEecccccCC---EEEEEeeecchhhcchhhccceecCcccccc
No 20
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=26.84 E-value=64 Score=27.13 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=25.6
Q ss_pred eCCeeEEE-eccCCCCCcEEEEEeCCCcCCCCC
Q psy17212 10 SQTSVIIG-LGHGKTHKDAASVRATHPIPPSCG 41 (102)
Q Consensus 10 s~d~l~~~-~g~g~~~~d~~~vran~Pip~~~~ 41 (102)
.-.+|+|+ +|.+..-.+.-.+++.||+|...+
T Consensus 63 ~~~GvVVt~~g~~~~~~~ieViea~HPvPDe~s 95 (422)
T COG2379 63 PLAGVVVTPYGYGGPCPRIEVIEAGHPVPDEAS 95 (422)
T ss_pred ccCceEeccCccCCCCCceeEEeCCCCCCCchh
Confidence 45678888 687766567899999999998763
No 21
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=26.41 E-value=85 Score=20.89 Aligned_cols=34 Identities=9% Similarity=0.139 Sum_probs=26.6
Q ss_pred ceeeEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCC
Q psy17212 4 CYKRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSC 40 (102)
Q Consensus 4 ~~~l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~ 40 (102)
|..+.+++|++.|....+ .+..+.-+|-++|...
T Consensus 51 ~KYV~id~d~v~v~~e~~---~~~s~Le~ni~lp~~~ 84 (88)
T COG0851 51 SKYVQIDPDKVEVSLERD---DRISILELNITLPEVS 84 (88)
T ss_pred HHHheeCcccEEEEEcCC---CCeEEEEEeccccccc
Confidence 456789999999985444 2678888999999865
No 22
>PF04217 DUF412: Protein of unknown function, DUF412; InterPro: IPR007334 This family consists of bacterial uncharacterised proteins.
Probab=25.14 E-value=5.3 Score=28.83 Aligned_cols=19 Identities=42% Similarity=0.817 Sum_probs=17.1
Q ss_pred EEeCCCcCCCCCceEEEEE
Q psy17212 30 VRATHPIPPSCGLYYFEVK 48 (102)
Q Consensus 30 vran~Pip~~~~vyYFEV~ 48 (102)
-||++|+|+.....|+||.
T Consensus 85 kRa~tpLPp~l~~Wy~ei~ 103 (143)
T PF04217_consen 85 KRANTPLPPSLLSWYHEIR 103 (143)
T ss_pred cccCCCCCHHHHHHHHHHH
Confidence 3899999999999999975
No 23
>COG3092 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.98 E-value=5.1 Score=28.78 Aligned_cols=18 Identities=39% Similarity=1.051 Sum_probs=16.5
Q ss_pred EeCCCcCCCCCceEEEEE
Q psy17212 31 RATHPIPPSCGLYYFEVK 48 (102)
Q Consensus 31 ran~Pip~~~~vyYFEV~ 48 (102)
||+.|+|++..++||||-
T Consensus 91 raiTpl~p~la~Wfyev~ 108 (149)
T COG3092 91 RAITPLPPQLAVWFYEVR 108 (149)
T ss_pred ccCCCCChHHHHHHHHHH
Confidence 899999999999999975
No 24
>PF07657 MNNL: N terminus of Notch ligand; InterPro: IPR011651 This entry represents a region of conserved sequence at the N terminus of several Notch ligand proteins.; GO: 0007219 Notch signaling pathway, 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=24.94 E-value=2e+02 Score=18.45 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=31.0
Q ss_pred EEEEEEEec-CCCCeEEEeccCCCCCCccCCCccCCcEEEEEee------eeeccCCCeeeeeec
Q psy17212 44 YFEVKIVSK-GRDGYMGIGLSAQDVNMNRLPGKYLSCGLYFEVK------IVSKGWDGYMGIGMS 101 (102)
Q Consensus 44 YFEV~Il~~-g~~~~i~IG~~~~~~~l~R~PGw~~~s~~Yfe~~------~~~~~~~~~~G~G~~ 101 (102)
+||++|++- ...+..+-|-|.... ..+...+ ..|=.||-+= .+.-.-.|+||.+.+
T Consensus 4 ~FEL~l~sf~N~~G~l~~G~CC~~~-~~~~~c~-~~C~t~FrvCLK~yQ~~v~~~~pCtfG~~~T 66 (77)
T PF07657_consen 4 VFELQLHSFQNPNGELSNGNCCDGG-SSSGCCS-DPCRTFFRVCLKHYQAVVSPEGPCTFGNAST 66 (77)
T ss_pred EEEEEEEEEECCCCccCCCCCCCCC-ccCCccC-CCccceEEEechhhcccCCCCCCCCCCCeec
Confidence 799999874 344555556666555 2222222 2233465442 234455788888765
No 25
>PRK01816 hypothetical protein; Provisional
Probab=24.44 E-value=5.6 Score=28.72 Aligned_cols=18 Identities=33% Similarity=0.875 Sum_probs=16.8
Q ss_pred EeCCCcCCCCCceEEEEE
Q psy17212 31 RATHPIPPSCGLYYFEVK 48 (102)
Q Consensus 31 ran~Pip~~~~vyYFEV~ 48 (102)
||++|+|+.....|+|+.
T Consensus 85 Ra~tpLPpsL~~Wy~el~ 102 (143)
T PRK01816 85 RSVTPLPPALLNWFYEVR 102 (143)
T ss_pred ccCCCCChHHHHHHHHHH
Confidence 899999999999999986
No 26
>PF00608 Adeno_shaft: Adenoviral fibre protein (repeat/shaft region); InterPro: IPR000939 Adenoviruses are responsible for diseases such as pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. Viral infection commences with recognition of host cell receptors by means of specialised proteins on viral surfaces. Specific attachment of adenovirus is achieved through interactions between host-cell receptors and the adenovirus fibre protein and is mediated by the globular carboxy-terminal domain of the adenovirus fibre protein, rather than the 'shaft' region represented by this family. The alignment of this family contains two copies of a fifteen residue repeat found in the 'shaft' region of adenoviral fibre proteins.; GO: 0007155 cell adhesion, 0009405 pathogenesis, 0019062 virion attachment to host cell surface receptor; PDB: 1V1H_A 1QIU_D 1V1I_B.
Probab=23.42 E-value=77 Score=16.47 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=9.4
Q ss_pred eeeEEeCCeeEEEeccC
Q psy17212 5 YKRELSQTSVIIGLGHG 21 (102)
Q Consensus 5 ~~l~vs~d~l~~~~g~g 21 (102)
.-|++++++|.+..|.+
T Consensus 10 ~pL~v~n~~L~l~~g~g 26 (30)
T PF00608_consen 10 PPLTVSNNALTLKLGSG 26 (30)
T ss_dssp TTEEE-TS-EEE-B-TT
T ss_pred CCEEEeCCeEEEeeCCC
Confidence 45788888888886655
No 27
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=23.34 E-value=3.8e+02 Score=21.17 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=47.3
Q ss_pred CCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEe----cCCCCe--EEEeccCCCCCCccCCCccCCcEEEEE
Q psy17212 11 QTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVS----KGRDGY--MGIGLSAQDVNMNRLPGKYLSCGLYFE 84 (102)
Q Consensus 11 ~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~----~g~~~~--i~IG~~~~~~~l~R~PGw~~~s~~Yfe 84 (102)
...|+++... ...+.++--+..+|... .+.|||..- .+.++. |++=|+.. ...-.||---++-+|=-
T Consensus 31 ~g~LRLT~~~---~nqata~~~~~~FPs~~--n~v~veFd~yayg~~g~GADGia~vLsDa--sv~p~~G~fGGsLGYa~ 103 (255)
T cd06900 31 NNRLRLTDAS---GNQATAVTLQRLFPSAG--NYVEVEFDYYAYGSGGNGADGVALVLSDA--SVTPQAGAFGGSLGYAQ 103 (255)
T ss_pred cCeEEeccCc---cCcceeEEEeeeeccCC--CeEEEEEEEEEecCCCCCCceEEEEEeCC--CcCCcCCCcCccccccc
Confidence 4556666322 23466666678888876 455555432 123333 44444433 33347777777777744
Q ss_pred ee-eeeccCCCeeeeeecC
Q psy17212 85 VK-IVSKGWDGYMGIGMSA 102 (102)
Q Consensus 85 ~~-~~~~~~~~~~G~G~~~ 102 (102)
.+ ...-=.++++||||.+
T Consensus 104 ~~~~~~GfaGGwLGiGlDE 122 (255)
T cd06900 104 RNDGVPGFAGGWLGIGLDE 122 (255)
T ss_pred ccCCCCccccceEEEEEec
Confidence 33 2233567888998853
No 28
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=23.30 E-value=1.2e+02 Score=18.44 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=13.5
Q ss_pred EEEEeCCCcCCCCCceEEEEEEEec
Q psy17212 28 ASVRATHPIPPSCGLYYFEVKIVSK 52 (102)
Q Consensus 28 ~~vran~Pip~~~~vyYFEV~Il~~ 52 (102)
..|++..|-.. .|||++|++-
T Consensus 10 e~V~~rWP~s~----lYYe~kV~~~ 30 (55)
T PF09465_consen 10 EVVMVRWPGSS----LYYEGKVLSY 30 (55)
T ss_dssp -EEEEE-TTTS-----EEEEEEEEE
T ss_pred CEEEEECCCCC----cEEEEEEEEe
Confidence 45677777554 8999999983
No 29
>PRK10380 hypothetical protein; Provisional
Probab=23.07 E-value=1.2e+02 Score=18.86 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=13.4
Q ss_pred CCcEEEEEeCCCcCCCC
Q psy17212 24 HKDAASVRATHPIPPSC 40 (102)
Q Consensus 24 ~~d~~~vran~Pip~~~ 40 (102)
..-+--+|||||-|...
T Consensus 24 ~vtwyelRaDhp~P~sl 40 (63)
T PRK10380 24 TVTWYQLRADHPKPDSL 40 (63)
T ss_pred eEEEEEeecCCCCCCcc
Confidence 34577899999999865
No 30
>PF11113 Phage_head_chap: Head assembly gene product; InterPro: IPR021049 This head assembly protein is also refereed to as gene product 40 (Gp40). A specific gp20-gp40 membrane insertion structure constitutes the T4 prohead assembly initiation complex [].
Probab=22.31 E-value=1.3e+02 Score=18.36 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=16.9
Q ss_pred CceEEEEEEEecCCCCeEEEeccCC
Q psy17212 41 GLYYFEVKIVSKGRDGYMGIGLSAQ 65 (102)
Q Consensus 41 ~vyYFEV~Il~~g~~~~i~IG~~~~ 65 (102)
-+|++|+++. +|.+.+.|++.
T Consensus 16 iVYi~~~~~~----~G~l~vdfsT~ 36 (56)
T PF11113_consen 16 IVYITELHYD----DGKLKVDFSTP 36 (56)
T ss_pred EEEEEEEEEc----CCeEEEEEeCC
Confidence 4799999985 77888888774
No 31
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=21.83 E-value=1.5e+02 Score=21.94 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=20.8
Q ss_pred cEEEEEeCCCcCCCCCceEEEEEEEec
Q psy17212 26 DAASVRATHPIPPSCGLYYFEVKIVSK 52 (102)
Q Consensus 26 d~~~vran~Pip~~~~vyYFEV~Il~~ 52 (102)
+-+.|--|||+.=+. ..|||+|++.
T Consensus 116 ~~V~VDfNHpLAGkt--L~feveVv~v 140 (174)
T COG1047 116 DRVTVDFNHPLAGKT--LHFEVEVVEV 140 (174)
T ss_pred CEEEEeCCCcCCCCe--EEEEEEEEEE
Confidence 456778899999888 9999999874
No 32
>COG3212 Predicted membrane protein [Function unknown]
Probab=21.76 E-value=1e+02 Score=21.87 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=13.0
Q ss_pred CCceEEEEEEEec-CCCC
Q psy17212 40 CGLYYFEVKIVSK-GRDG 56 (102)
Q Consensus 40 ~~vyYFEV~Il~~-g~~~ 56 (102)
.+.++|||+|... +..-
T Consensus 109 ~g~~vYevei~~~d~~e~ 126 (144)
T COG3212 109 NGRLVYEVEIVKDDGQEY 126 (144)
T ss_pred CCEEEEEEEEEeCCCcEE
Confidence 4889999999976 4443
No 33
>PF14469 AKAP28: 28 kDa A-kinase anchor
Probab=20.84 E-value=1.2e+02 Score=21.11 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=28.8
Q ss_pred eCCCcCCCCCceEEEEEEEec-CCCCeEEEeccCCCCCCccCCC
Q psy17212 32 ATHPIPPSCGLYYFEVKIVSK-GRDGYMGIGLSAQDVNMNRLPG 74 (102)
Q Consensus 32 an~Pip~~~~vyYFEV~Il~~-g~~~~i~IG~~~~~~~l~R~PG 74 (102)
+..|+|....--||=+++... +..--|.|++-=++.++..-||
T Consensus 58 ~~~PiP~atA~VyF~i~vsk~kp~~~pv~v~y~fE~~~lvhr~~ 101 (122)
T PF14469_consen 58 ARKPIPRATASVYFTIKVSKIKPPHYPVDVTYRFEGQRLVHRPG 101 (122)
T ss_pred CCCCCCcEEEEEEEEEEecccCccccceEEEEEEcCceeecCCc
Confidence 356788877778898887432 2333477788777777766555
Done!