Query psy17212
Match_columns 102
No_of_seqs 107 out of 262
Neff 5.7
Searched_HMMs 29240
Date Sat Aug 17 00:44:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yyo_A SPRY domain-containing 99.8 2.8E-18 9.6E-23 122.9 8.4 92 4-101 8-112 (171)
2 3toj_A SET1/ASH2 histone methy 99.6 7.5E-15 2.5E-19 108.1 9.7 90 5-101 22-123 (213)
3 3emw_A SPRY domain-containing 98.6 4.3E-08 1.5E-12 72.1 6.2 75 5-83 53-132 (217)
4 2jk9_A SPRY domain-containing 98.6 1.7E-07 5.9E-12 68.0 8.3 75 5-83 42-122 (212)
5 2afj_A Gene rich cluster, C9 g 98.6 7.8E-08 2.7E-12 70.7 5.6 76 4-83 49-129 (226)
6 2fbe_A Predicted: similar to R 95.6 0.022 7.5E-07 41.3 5.6 60 5-69 21-88 (201)
7 3kb5_A Tripartite motif-contai 95.5 0.022 7.6E-07 40.8 5.1 60 5-69 23-91 (193)
8 2vok_A 52 kDa RO protein; poly 95.5 0.024 8.3E-07 40.6 5.3 60 5-69 20-87 (188)
9 2wl1_A Pyrin, marenostrin; amy 95.4 0.019 6.5E-07 41.1 4.6 60 5-69 24-91 (191)
10 3uv9_A TRIM5alpha, tripartite 92.5 0.23 7.8E-06 35.3 5.3 52 6-68 23-74 (186)
11 4b3n_A Maltose-binding peripla 90.5 0.33 1.1E-05 39.3 4.9 55 6-65 421-491 (602)
12 2e63_A KIAA1787 protein; struc 87.1 1.3 4.5E-05 31.2 5.5 60 4-66 14-75 (170)
13 2yue_A Protein neuralized; str 84.7 2.1 7.1E-05 30.1 5.5 56 4-65 16-73 (168)
14 2yyo_A SPRY domain-containing 82.7 0.83 2.9E-05 31.7 2.7 22 81-102 41-62 (171)
15 3toj_A SET1/ASH2 histone methy 62.5 6.3 0.00022 28.0 3.2 21 82-102 54-74 (213)
16 3cgm_A SLYD, peptidyl-prolyl C 51.6 20 0.00069 24.5 4.2 26 25-52 110-135 (158)
17 2kr7_A FKBP-type peptidyl-prol 51.2 25 0.00085 23.6 4.6 26 25-52 119-144 (151)
18 3pr9_A FKBP-type peptidyl-prol 48.1 25 0.00084 24.1 4.2 25 25-51 123-147 (157)
19 2l8d_A Lamin-B receptor; DNA b 46.6 8.8 0.0003 23.4 1.5 15 75-90 20-34 (66)
20 4dt4_A FKBP-type 16 kDa peptid 44.2 29 0.00099 24.1 4.1 26 25-52 138-163 (169)
21 2kfw_A FKBP-type peptidyl-prol 36.9 25 0.00087 24.9 2.9 26 25-52 114-139 (196)
22 1tqz_A Necap1; endocytosis, st 36.2 18 0.0006 24.8 1.9 25 41-65 88-113 (133)
23 2afj_A Gene rich cluster, C9 g 35.4 21 0.00072 25.3 2.3 21 81-101 84-104 (226)
24 2jk9_A SPRY domain-containing 34.9 22 0.00074 24.8 2.3 22 81-102 77-98 (212)
25 2k8i_A SLYD, peptidyl-prolyl C 34.8 46 0.0016 22.9 4.0 26 25-52 114-139 (171)
26 1ix5_A FKBP; ppiase, isomerase 34.2 22 0.00074 23.9 2.1 25 25-51 124-148 (151)
27 3emw_A SPRY domain-containing 32.6 25 0.00084 25.0 2.3 20 82-101 88-107 (217)
28 3prb_A FKBP-type peptidyl-prol 26.7 80 0.0027 22.9 4.2 26 25-52 123-148 (231)
29 2dig_A Lamin-B receptor; tudor 25.3 33 0.0011 20.9 1.6 14 75-89 23-36 (68)
No 1
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=122.89 Aligned_cols=92 Identities=21% Similarity=0.341 Sum_probs=76.3
Q ss_pred ceeeEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCCCccCCCccCCcEEEE
Q psy17212 4 CYKRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPGKYLSCGLYF 83 (102)
Q Consensus 4 ~~~l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~l~R~PGw~~~s~~Yf 83 (102)
+..|.|++|+|+++ ++. .++++|||++|++. ++|||||+|++.++++.++||+++++++++|+|||+..|++|+
T Consensus 8 ~~~l~~~~d~l~~~---~~~-~~~~~vra~~p~~~--g~~YfEv~i~~~~~~~~~~IG~a~~~~~~~~~~G~d~~S~gy~ 81 (171)
T 2yyo_A 8 FKHILVDGDTLSYH---GNS-GEVGCYVASRPLTK--DSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGWLPDSVAYH 81 (171)
T ss_dssp EESEEEETTEEEEC---CCS-SCCEEEECSSCCCS--SSCEEEEEEEEETTTCCCEEEEECTTCCTTSCTTSSTTCEEEE
T ss_pred cceEEEcCCEEEEe---CCC-CceeEEEECCCCCC--CCEEEEEEEEECCCCcEEEEEecCCCCCCccCCCccCCEEEEE
Confidence 45789999999987 432 58999999999986 5699999999999999999999999999999999999999998
Q ss_pred Eee---ee----ec------cCCCeeeeeec
Q psy17212 84 EVK---IV----SK------GWDGYMGIGMS 101 (102)
Q Consensus 84 e~~---~~----~~------~~~~~~G~G~~ 101 (102)
-.+ ++ ++ ..+..+|+||.
T Consensus 82 ~~dG~~~~~~~~~~~yg~~f~~GDvIGc~id 112 (171)
T 2yyo_A 82 ADDGKLYNGRAKGRQFGSKCNSGDRIGCGIE 112 (171)
T ss_dssp TTTCCEESSSSCCBCCSCCCCTTCEEEEEEC
T ss_pred cCCCeEEeCCCCCCcCCCCCCCCCEEEEEEE
Confidence 532 12 22 34567788773
No 2
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=99.58 E-value=7.5e-15 Score=108.08 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=74.0
Q ss_pred eeeEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCCCccCCCccCCcEEEEE
Q psy17212 5 YKRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPGKYLSCGLYFE 84 (102)
Q Consensus 5 ~~l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~l~R~PGw~~~s~~Yfe 84 (102)
+.|.||+|+|+|+. ..+.++|||+++++. +.|||||+|.+.++++.+.||++++.++++++|||+..||+|+-
T Consensus 22 ~~l~ls~d~l~v~~-----~~~~~~vra~~~v~~--G~~YfEV~v~~~~~~~~~~iG~a~~~~~~~~~~G~d~~S~gy~~ 94 (213)
T 3toj_A 22 PQLKISDDRLTVVG-----EKGYSMVRASHGVRK--GAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRS 94 (213)
T ss_dssp TTSEECTTSSEEEC-----CSSCEEEEESCCBSS--EEEEEEEEEEECCTTCEEEEEEECTTSCTTSCTTSSTTEEEEET
T ss_pred CCEEEcCCCcEEEe-----CCceeEEEeCCCccC--CeEEEEEEEeecCCCceEEEEeccCCcccccCCCCCCCcEEEEC
Confidence 56899999999983 366899999999984 77999999999888899999999999999999999999999862
Q ss_pred ee---ee---ec------cCCCeeeeeec
Q psy17212 85 VK---IV---SK------GWDGYMGIGMS 101 (102)
Q Consensus 85 ~~---~~---~~------~~~~~~G~G~~ 101 (102)
.+ ++ ++ ..+..+|++|.
T Consensus 95 ~~G~~~h~~~~~~yg~~~~~GDvIGc~ld 123 (213)
T 3toj_A 95 KKGTKFHQSIGKHYSSGYGQGDVLGFYIN 123 (213)
T ss_dssp TTTCEEETTEEECCSCCCCTTCEEEEEEE
T ss_pred CCCeEEeCCcCcccCCCCCCCCEEEEEEE
Confidence 21 11 22 34567788763
No 3
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=98.64 E-value=4.3e-08 Score=72.15 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=59.6
Q ss_pred eeeEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCC-----CccCCCccCCc
Q psy17212 5 YKRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVN-----MNRLPGKYLSC 79 (102)
Q Consensus 5 ~~l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~-----l~R~PGw~~~s 79 (102)
+.|.||+|.++|..++-. ....+|+++.++. ++.+||||+|.++.+...+.||++.+..+ ..++.||+..|
T Consensus 53 ~~L~lSed~~~v~~~~~~--~~~~~Vl~~~~~~--sGrhYWEV~v~~~~~g~~~~vGv~~~~~~r~~~g~~~~lG~~~~S 128 (217)
T 3emw_A 53 ENIEVKEGGLYFERRPVA--QSTDGARGKRGYS--RGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAALLGSNSES 128 (217)
T ss_dssp TTEEEEGGGTEEEECCBS--SCEEEEEESCCBS--SSEEEEEEECCGGGCTTCCEEEEECTTSCCEESSSCCCTTSSTTE
T ss_pred CCEEECCCCeEEEECccC--CCCCEEEeCCCcc--CccEEEEEEEcccCCCCceeEEEEcCccccccCCccccccCCCCE
Confidence 468999999999854322 2356999999986 56699999998764445789999999988 46789999999
Q ss_pred EEEE
Q psy17212 80 GLYF 83 (102)
Q Consensus 80 ~~Yf 83 (102)
|+|.
T Consensus 129 W~l~ 132 (217)
T 3emw_A 129 WGWD 132 (217)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9965
No 4
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=98.60 E-value=1.7e-07 Score=68.00 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=57.9
Q ss_pred eeeEEeCCe-eEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCCC-----ccCCCccCC
Q psy17212 5 YKRELSQTS-VIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNM-----NRLPGKYLS 78 (102)
Q Consensus 5 ~~l~vs~d~-l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~l-----~R~PGw~~~ 78 (102)
.+|.||+|. +++...+. .....+|+++.++. ++.|||||+|.+......+.||+|.+..++ ..+.|++..
T Consensus 42 ~~L~lsed~~~~~~~~~~--~~~~~~Vlg~~~f~--sGrhYWEV~v~~~~~~~~w~vGV~~~~~~r~~~g~~~~~G~~~~ 117 (212)
T 2jk9_A 42 LNVFVKEDDKLIFHRHPV--AQSTDAIRGKVGYT--RGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHE 117 (212)
T ss_dssp TTEEEETTEEEEEEECCB--TTEEEEEEESCCBC--SSEEEEEEECCGGGCTTCCEEEEECTTSCCEEESSCCCTTSSTT
T ss_pred CceEEeCCCeEEEEECCC--CCccceEEcCCCcc--CCeEEEEEEEecccCCCcEEEEEEcCCccccccCcccccccCCC
Confidence 478999986 57764322 23578999999885 567999999976545567789999999886 356799999
Q ss_pred cEEEE
Q psy17212 79 CGLYF 83 (102)
Q Consensus 79 s~~Yf 83 (102)
||+|.
T Consensus 118 sw~~~ 122 (212)
T 2jk9_A 118 SWGWD 122 (212)
T ss_dssp EEEEE
T ss_pred cEeeE
Confidence 99864
No 5
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=98.57 E-value=7.8e-08 Score=70.71 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=58.6
Q ss_pred ceeeEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCC-----CccCCCccCC
Q psy17212 4 CYKRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVN-----MNRLPGKYLS 78 (102)
Q Consensus 4 ~~~l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~-----l~R~PGw~~~ 78 (102)
...|.||+|.+++...+.....| +|+++.++. ++.|||||+|.+..+...+.||+|.+..+ ...+.|++..
T Consensus 49 ~~~L~lSed~~~v~~~~~~~~~~--~Vlg~~~f~--sGrhYWEV~V~~~~~~~~w~vGV~~~s~~~~r~~~~~~~G~~~~ 124 (226)
T 2afj_A 49 SENIDVKEGGLCFERRPVAQSTD--GVRGKRGYS--RGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSE 124 (226)
T ss_dssp CCSSEEETTTTEEECSSCTTTSS--SEEECCCCC--CSEEEEEEECCCCSSSCCCEEEEEESSCCCSSCSSSCCCCCSCE
T ss_pred CCCEEEeCCCEEEEECCCCCCcC--eEEECCCcc--CCEEEEEEEEeccCCCCCEEEEecCCccccccccccccccCCCC
Confidence 35799999999998533222233 899999887 46799999997655566789999999885 3456899999
Q ss_pred cEEEE
Q psy17212 79 CGLYF 83 (102)
Q Consensus 79 s~~Yf 83 (102)
+|+|.
T Consensus 125 sw~~~ 129 (226)
T 2afj_A 125 SWGWD 129 (226)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 99976
No 6
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=95.64 E-value=0.022 Score=41.26 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=41.4
Q ss_pred eeeEEeCCeeEEEeccCCC--------CCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCCC
Q psy17212 5 YKRELSQTSVIIGLGHGKT--------HKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNM 69 (102)
Q Consensus 5 ~~l~vs~d~l~~~~g~g~~--------~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~l 69 (102)
.+|.||+|..+|+.+.... -....+|.....+.. +.+||||++- ......||+|.+..+-
T Consensus 21 ~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsS--GrHYWEVev~---~~~~w~vGV~~~si~R 88 (201)
T 2fbe_A 21 NYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTS--GRHYWEVDVG---TSQVWDVGVCKESVNR 88 (201)
T ss_dssp TTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSS--SEEEEEEECT---TCSEEEEEEEETTSCC
T ss_pred CceEECCCCcEEEECCccCCCCCCccceeeccceecCccccC--CceEEEEEeC---CCCEEEEEEeeCccCC
Confidence 4799999999998543221 112456777777654 5599999984 3456899999876543
No 7
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=95.48 E-value=0.022 Score=40.77 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=40.9
Q ss_pred eeeEEeCCeeEEEeccCC-C--------CCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCCC
Q psy17212 5 YKRELSQTSVIIGLGHGK-T--------HKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNM 69 (102)
Q Consensus 5 ~~l~vs~d~l~~~~g~g~-~--------~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~l 69 (102)
++|.||+|..+|..+... . -....+|.+...+.. +.+||||++- ......||+|.+..+-
T Consensus 23 ~~L~lSed~~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fss--GrhYWEVev~---~~~~W~lGV~~~s~~R 91 (193)
T 3kb5_A 23 PSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSE--GEHYWEVDVG---DKPRWALGVIAAEAPR 91 (193)
T ss_dssp TTEEEETTTTEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBCS--SEEEEEEECT---TCSSEEEEEEETTSCC
T ss_pred CCEEECCCCCEEEECCcCCCCCCCCccccccccEEccCCcccC--CCEEEEEEeC---cCceEEEEEeeCCcCc
Confidence 578999999998854332 1 112456777776654 4599999984 3446789998876643
No 8
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=95.47 E-value=0.024 Score=40.62 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=41.2
Q ss_pred eeeEEeCCeeEEEeccCCC--------CCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCCC
Q psy17212 5 YKRELSQTSVIIGLGHGKT--------HKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNM 69 (102)
Q Consensus 5 ~~l~vs~d~l~~~~g~g~~--------~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~l 69 (102)
++|.||+|..+|+.+.... -....+|.....+.. +.+||||++- ......||+|.+..+-
T Consensus 20 ~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsS--GrHYWEVev~---~~~~w~vGV~~~si~R 87 (188)
T 2vok_A 20 SWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSS--GKMYWEVDVT---QKEAWDLGVCRDSVQR 87 (188)
T ss_dssp TTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSS--SEEEEEEECT---TCSCEEEEEEETTCCC
T ss_pred CCeEECCCCCEEEECCccCCCCCCccceeeeccccccCcccC--CCeEEEEEec---CCceEEEEEeeCCcCC
Confidence 5799999999998543211 112456777777654 5599999984 3446889999876543
No 9
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=95.40 E-value=0.019 Score=41.12 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=39.9
Q ss_pred eeeEEeCCeeEEEeccCCCC--------CcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCCC
Q psy17212 5 YKRELSQTSVIIGLGHGKTH--------KDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNM 69 (102)
Q Consensus 5 ~~l~vs~d~l~~~~g~g~~~--------~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~l 69 (102)
.+|.||+|..+|..+..... ....+|.....+.. +.+||||++- ......||+|.+..+-
T Consensus 24 ~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fss--GrHYWEVev~---~~~~w~vGV~~~s~~R 91 (191)
T 2wl1_A 24 PNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLS--GRRYWEVEVG---DKTAWILGACKTSISR 91 (191)
T ss_dssp TTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCS--SEEEEEEECT---TCSCEEEEEEETTCCS
T ss_pred CceEECCCCcEEEECCcCCCCCCCcccccccccccCcccccC--CCEEEEEEeC---CCCEEEEEEeeCCcCC
Confidence 47899999999985432111 12345666666554 5699999984 3456889999876543
No 10
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=92.49 E-value=0.23 Score=35.26 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=35.9
Q ss_pred eeEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCCCCC
Q psy17212 6 KRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVN 68 (102)
Q Consensus 6 ~l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~~~~ 68 (102)
.|.||+|+..|.+.. ..+|-....+.. +.+||||++- .+....||+|.+..+
T Consensus 23 ~l~lSed~r~Vr~~~------~~~VLG~~~fts--GrHYWEVeV~---~~~~W~vGV~~~~~~ 74 (186)
T 3uv9_A 23 HAVIAEDKRQVSSRA------GTGVLGSQSITS--GKHYWEVDVS---KKSAWILGVCAGFQS 74 (186)
T ss_dssp CCEECTTSSCEECCC------SSCEECSSCBCS--SEEEEEEECT---TCSCEEEEEESCSTT
T ss_pred CceECCCCCEEeecC------CCcCcCCCCCCC--CCEEEEEEEc---CCCcEEEEEEEEEec
Confidence 488999998887422 234666666655 4599999983 445678999876543
No 11
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=90.51 E-value=0.33 Score=39.33 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=34.8
Q ss_pred eeEEeCCeeEEEeccCCCC----------------CcEEEEEeCCCcCCCCCceEEEEEEEecCCCCeEEEeccCC
Q psy17212 6 KRELSQTSVIIGLGHGKTH----------------KDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQ 65 (102)
Q Consensus 6 ~l~vs~d~l~~~~g~g~~~----------------~d~~~vran~Pip~~~~vyYFEV~Il~~g~~~~i~IG~~~~ 65 (102)
+|.||.|+..|+.+..+.. ....+|-....+.. +.+||||++ +.+....||+|..
T Consensus 421 ~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~~~~VLg~~~f~s--GrhyWEV~v---~~~~~w~~Gv~~~ 491 (602)
T 4b3n_A 421 HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVLGSQSITS--GKHYWEVDV---SKKSAWILGVCAG 491 (602)
T ss_dssp SCEECTTSSEEECCCC--------------------CCCCEEESSCBSS--SEEEEEEEC---TTCSCEEEEEECC
T ss_pred ceeEecCCCEEEECCccccccCCCccCCCCCcccCCCCCEeccCCCCCC--EEEEEEEEE---CCCeeEEEEEeec
Confidence 4889999999986543211 11234555555444 559999998 4455678888864
No 12
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.15 E-value=1.3 Score=31.21 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=42.8
Q ss_pred ceeeEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEec--CCCCeEEEeccCCC
Q psy17212 4 CYKRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSK--GRDGYMGIGLSAQD 66 (102)
Q Consensus 4 ~~~l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~--g~~~~i~IG~~~~~ 66 (102)
.+.+.|++|+.++....-..+-.-+.|.+++|+.+.. -|+|+|.+. +-.+.+.+||++.+
T Consensus 14 G~nI~L~~~~~~A~R~~~~~~f~~givFS~rPl~~~E---~~~v~I~~~~~~wsG~l~~GvT~~d 75 (170)
T 2e63_A 14 GRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGR---VFTVRIDRKVNSWSGSIEIGVTALD 75 (170)
T ss_dssp CSSEEECSSSCEEEESCTTTCSCSCCEEEEEEECTTC---EEEEEEEEECCSSCCCCEEEEESSC
T ss_pred CCCeEECCCCeEEEeCCCCcccCceEEEECCCCCCCC---EEEEEEEeecCCcceeEEEEEEccC
Confidence 4678999999999843211223457889999998876 367777644 44678999998763
No 13
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=84.70 E-value=2.1 Score=30.13 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=41.4
Q ss_pred ceeeEEeCCeeEEEeccCCCCCcEEEEEeCCCcCCCCCceEEEEEEEec--CCCCeEEEeccCC
Q psy17212 4 CYKRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSK--GRDGYMGIGLSAQ 65 (102)
Q Consensus 4 ~~~l~vs~d~l~~~~g~g~~~~d~~~vran~Pip~~~~vyYFEV~Il~~--g~~~~i~IG~~~~ 65 (102)
.+++.|++|+.++... .+-.-+.|.+++||.... -|+|+|.+. .-.+.+.|||++.
T Consensus 16 G~nI~L~~~~~~A~R~---~sf~~givFS~RPl~~~E---~~~v~I~~~~~~wsG~l~~GvT~~ 73 (168)
T 2yue_A 16 GDNIRISRDGTLARRF---ESFCRAITFSARPVRINE---RICVKFAEISNNWNGGIRFGFTSN 73 (168)
T ss_dssp CTTEEECCSSCCEEEC---SCSSCCEEEESSCCCSSC---CEEEEEEECCSSSSSCCEEEEESS
T ss_pred CCCeEECCCCcEEEec---ccCCceEEEECCCCcCCC---EEEEEEEeecCCcceeEEEeeeec
Confidence 3568899999999843 223457899999998875 367777654 4467899999775
No 14
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=82.66 E-value=0.83 Score=31.70 Aligned_cols=22 Identities=41% Similarity=0.759 Sum_probs=20.1
Q ss_pred EEEEeeeeeccCCCeeeeeecC
Q psy17212 81 LYFEVKIVSKGWDGYMGIGMSA 102 (102)
Q Consensus 81 ~Yfe~~~~~~~~~~~~G~G~~~ 102 (102)
.|||+++..++.++.|.||+++
T Consensus 41 ~YfEv~i~~~~~~~~~~IG~a~ 62 (171)
T 2yyo_A 41 NYFEVSIVDSGVRGTIAVGLVP 62 (171)
T ss_dssp CEEEEEEEEETTTCCCEEEEEC
T ss_pred EEEEEEEEECCCCcEEEEEecC
Confidence 4999999999999999999974
No 15
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=62.50 E-value=6.3 Score=28.02 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.9
Q ss_pred EEEeeeeeccCCCeeeeeecC
Q psy17212 82 YFEVKIVSKGWDGYMGIGMSA 102 (102)
Q Consensus 82 Yfe~~~~~~~~~~~~G~G~~~ 102 (102)
|||+++..++.+..+.||++.
T Consensus 54 YfEV~v~~~~~~~~~~iG~a~ 74 (213)
T 3toj_A 54 YFEITVDEMPPDTAARLGWSQ 74 (213)
T ss_dssp EEEEEEEECCTTCEEEEEEEC
T ss_pred EEEEEEeecCCCceEEEEecc
Confidence 999999998888999999874
No 16
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=51.58 E-value=20 Score=24.46 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCcCCCCCceEEEEEEEec
Q psy17212 25 KDAASVRATHPIPPSCGLYYFEVKIVSK 52 (102)
Q Consensus 25 ~d~~~vran~Pip~~~~vyYFEV~Il~~ 52 (102)
.+...+-.|||+.=+. +-|||+|++.
T Consensus 110 ~~~v~vD~NHPLAGk~--L~F~vev~~v 135 (158)
T 3cgm_A 110 GEEVTVDFNHPLAGKD--LDFQVEVVKV 135 (158)
T ss_dssp TTEEEEECSCTTTTCC--EEEEEEEEEE
T ss_pred CCEEEEeCCccccCCE--EEEEEEEEEe
Confidence 3567788999998877 9999999863
No 17
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=51.19 E-value=25 Score=23.65 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCcCCCCCceEEEEEEEec
Q psy17212 25 KDAASVRATHPIPPSCGLYYFEVKIVSK 52 (102)
Q Consensus 25 ~d~~~vran~Pip~~~~vyYFEV~Il~~ 52 (102)
.|...|-.|||+.=+. .-|||+|++.
T Consensus 119 ~~~v~vD~NHPLAG~~--L~F~v~v~~v 144 (151)
T 2kr7_A 119 ATHVMVDYNHPLAGKT--LAFRFKVLGF 144 (151)
T ss_dssp SSEEEEEECCTTSCCC--EEEEEEEEEE
T ss_pred CCEEEEECCCcCCCCE--EEEEEEEEEe
Confidence 4567788999998887 8999999863
No 18
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=48.11 E-value=25 Score=24.07 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCcCCCCCceEEEEEEEe
Q psy17212 25 KDAASVRATHPIPPSCGLYYFEVKIVS 51 (102)
Q Consensus 25 ~d~~~vran~Pip~~~~vyYFEV~Il~ 51 (102)
.|...|-.|||+.=+. .-|||+|++
T Consensus 123 ~~~V~vD~NHPLAG~~--L~F~v~v~~ 147 (157)
T 3pr9_A 123 SGRVLVDFNHELAGKE--VKYRIKIEE 147 (157)
T ss_dssp TTEEEEECSCTTTTCC--EEEEEEEEE
T ss_pred CCEEEEECCCccCCCe--EEEEEEEEE
Confidence 4578899999999888 889999875
No 19
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=46.56 E-value=8.8 Score=23.42 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=12.3
Q ss_pred ccCCcEEEEEeeeeec
Q psy17212 75 KYLSCGLYFEVKIVSK 90 (102)
Q Consensus 75 w~~~s~~Yfe~~~~~~ 90 (102)
| +++-.||++++.+=
T Consensus 20 W-~Gd~~yYparI~Si 34 (66)
T 2l8d_A 20 W-PGSVLYYEVQVTSY 34 (66)
T ss_dssp C-TTSSCEEEEEEEEE
T ss_pred c-CCCccceEEEEEEe
Confidence 7 88888999998653
No 20
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=44.23 E-value=29 Score=24.09 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=22.0
Q ss_pred CcEEEEEeCCCcCCCCCceEEEEEEEec
Q psy17212 25 KDAASVRATHPIPPSCGLYYFEVKIVSK 52 (102)
Q Consensus 25 ~d~~~vran~Pip~~~~vyYFEV~Il~~ 52 (102)
.|...|-.|||+.=+. .-|||+|++.
T Consensus 138 ~~~V~vD~NHPLAGk~--L~F~vev~~v 163 (169)
T 4dt4_A 138 GDSITVDFNHPLAGQT--VHFDIEVLEI 163 (169)
T ss_dssp TTEEEEECSCTTTTCC--EEEEEEEEEE
T ss_pred CCEEEEeCCCccCCCE--EEEEEEEEEE
Confidence 4578889999998887 8899999864
No 21
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=36.90 E-value=25 Score=24.94 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.0
Q ss_pred CcEEEEEeCCCcCCCCCceEEEEEEEec
Q psy17212 25 KDAASVRATHPIPPSCGLYYFEVKIVSK 52 (102)
Q Consensus 25 ~d~~~vran~Pip~~~~vyYFEV~Il~~ 52 (102)
.|...|-.|||+.=+. .-|||+|++.
T Consensus 114 ~~~V~vD~NHPLAGk~--L~F~vev~~v 139 (196)
T 2kfw_A 114 DDHVVVDGNHMLAGQN--LKFNVEVVAI 139 (196)
T ss_dssp SSSEEECCCCTTSCCC--CEEEEEECCC
T ss_pred CCEEEEeCCCCCCCCe--EEEEEEEEEe
Confidence 4677889999998877 8999999864
No 22
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=36.19 E-value=18 Score=24.84 Aligned_cols=25 Identities=32% Similarity=0.801 Sum_probs=20.7
Q ss_pred CceEEEEEEEe-cCCCCeEEEeccCC
Q psy17212 41 GLYYFEVKIVS-KGRDGYMGIGLSAQ 65 (102)
Q Consensus 41 ~vyYFEV~Il~-~g~~~~i~IG~~~~ 65 (102)
+--||=+.|.+ .|+...|+|||...
T Consensus 88 SSRYFVlRv~d~~gr~AfiGiGF~eR 113 (133)
T 1tqz_A 88 SSRYFVIRIQDGTGRSAFIGIGFTDR 113 (133)
T ss_dssp CCSCEEEEEEETTTEEEEEEEECSCH
T ss_pred CcCeEEEEEECCCCcEEEEeeeeccc
Confidence 45899999998 46788999999764
No 23
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=35.42 E-value=21 Score=25.30 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=16.8
Q ss_pred EEEEeeeeeccCCCeeeeeec
Q psy17212 81 LYFEVKIVSKGWDGYMGIGMS 101 (102)
Q Consensus 81 ~Yfe~~~~~~~~~~~~G~G~~ 101 (102)
.|+|+++..+..+..|.||+|
T Consensus 84 hYWEV~V~~~~~~~~w~vGV~ 104 (226)
T 2afj_A 84 HAWEISWPLEQRGTHAVVGVA 104 (226)
T ss_dssp EEEEEECCCCSSSCCCEEEEE
T ss_pred EEEEEEEeccCCCCCEEEEec
Confidence 399999977666667888886
No 24
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=34.93 E-value=22 Score=24.83 Aligned_cols=22 Identities=5% Similarity=0.128 Sum_probs=16.7
Q ss_pred EEEEeeeeeccCCCeeeeeecC
Q psy17212 81 LYFEVKIVSKGWDGYMGIGMSA 102 (102)
Q Consensus 81 ~Yfe~~~~~~~~~~~~G~G~~~ 102 (102)
.|||+++..+..+..|-||+|.
T Consensus 77 hYWEV~v~~~~~~~~w~vGV~~ 98 (212)
T 2jk9_A 77 HVWQITWAMRQRGTHAVVGVAT 98 (212)
T ss_dssp EEEEEECCGGGCTTCCEEEEEC
T ss_pred EEEEEEEecccCCCcEEEEEEc
Confidence 4999999766566677788763
No 25
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=34.81 E-value=46 Score=22.93 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=21.0
Q ss_pred CcEEEEEeCCCcCCCCCceEEEEEEEec
Q psy17212 25 KDAASVRATHPIPPSCGLYYFEVKIVSK 52 (102)
Q Consensus 25 ~d~~~vran~Pip~~~~vyYFEV~Il~~ 52 (102)
.+...|-.|||+.=+. .-|||+|++.
T Consensus 114 ~~~V~vD~NHPLAGk~--L~F~vev~~v 139 (171)
T 2k8i_A 114 DDHVVVDGNHMLAGQN--LKFNVEVVAI 139 (171)
T ss_dssp SSEEEEESCCSSCCCE--EEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCCe--EEEEEEEEEe
Confidence 4567888999998777 8899998763
No 26
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=34.20 E-value=22 Score=23.94 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCcCCCCCceEEEEEEEe
Q psy17212 25 KDAASVRATHPIPPSCGLYYFEVKIVS 51 (102)
Q Consensus 25 ~d~~~vran~Pip~~~~vyYFEV~Il~ 51 (102)
.|...+-.|||+.=+. .-|||+|++
T Consensus 124 ~~~v~vD~NHPLAG~~--L~F~vev~~ 148 (151)
T 1ix5_A 124 DNEVTLDFNHELAGKD--LVFTIKIIE 148 (151)
T ss_dssp TTEEEEECCCSSTTCC--EEEECCBCC
T ss_pred CCEEEEeCCCCCCCCe--EEEEEEEEE
Confidence 4567888999998877 899999875
No 27
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=32.62 E-value=25 Score=25.01 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=16.5
Q ss_pred EEEeeeeeccCCCeeeeeec
Q psy17212 82 YFEVKIVSKGWDGYMGIGMS 101 (102)
Q Consensus 82 Yfe~~~~~~~~~~~~G~G~~ 101 (102)
|||+++..+.++..+.+|+|
T Consensus 88 YWEV~v~~~~~g~~~~vGv~ 107 (217)
T 3emw_A 88 AWEISWPLEQRGTHAVVGVA 107 (217)
T ss_dssp EEEEECCGGGCTTCCEEEEE
T ss_pred EEEEEEcccCCCCceeEEEE
Confidence 99999987766667888886
No 28
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=26.67 E-value=80 Score=22.95 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCcCCCCCceEEEEEEEec
Q psy17212 25 KDAASVRATHPIPPSCGLYYFEVKIVSK 52 (102)
Q Consensus 25 ~d~~~vran~Pip~~~~vyYFEV~Il~~ 52 (102)
.|...|-.|||+.=.. .-|||+|++.
T Consensus 123 ~~~V~vD~NHPLAGk~--L~F~vev~~v 148 (231)
T 3prb_A 123 SGRVLVDFNHELAGKE--VKYRIKIEEV 148 (231)
T ss_dssp TTEEEEECSCTTTTCC--EEEEEEEEEE
T ss_pred CCEEEEeCCCccCCCE--EEEEEEEEEE
Confidence 3567888999998887 8899999863
No 29
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=25.29 E-value=33 Score=20.91 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=11.0
Q ss_pred ccCCcEEEEEeeeee
Q psy17212 75 KYLSCGLYFEVKIVS 89 (102)
Q Consensus 75 w~~~s~~Yfe~~~~~ 89 (102)
|. ++-.||++++.+
T Consensus 23 W~-Gd~~yYparItS 36 (68)
T 2dig_A 23 WP-GSSLYYEVEILS 36 (68)
T ss_dssp CT-TTCCEEEEEEEE
T ss_pred cc-CCccceEEEEEE
Confidence 55 778899999865
Done!