RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17212
(102 letters)
>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9
and 10. This family includes SPRY domain in Ran
binding protein (RBP or RanBPM) 9 and 10, and similar
proteins. RanBP9 (also known as RanBPM), a binding
partner of Ran, is a small Ras-like GTPase that exerts
multiple functions via interactions with various
proteins. RanBP9 and RanBP10 also act as androgen
receptor (AR) coactivators. Both consist of the
N-terminal proline- and glutamine-rich regions, the
SPRY domain, and LisH-CTLH and CRA motifs. SPRY domain
of RanBPM forms a complex with CD39, a prototypic
member of the NTPDase family, thus down-regulating
activity substantially. RanBP10 enhances the
transcriptional activity of AR in a ligand-dependent
manner and exhibits a protein expression pattern
different from RanBPM in various cell lines. RanBP10 is
highly expressed in AR-positive prostate cancer LNCaP
cells, while RanBPM is abundant in WI-38 and MCF-7
cells.
Length = 153
Score = 114 bits (288), Expect = 4e-34
Identities = 44/56 (78%), Positives = 50/56 (89%)
Query: 19 GHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPG 74
G GKT KDAA+VRA HPIPP CG+YYFEVKI+SKGRDGY+GIGLS + VN+NRLPG
Sbjct: 12 GSGKTDKDAAAVRANHPIPPQCGIYYFEVKILSKGRDGYIGIGLSTKGVNLNRLPG 67
>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins,
SSH4, HECT E3 and SPRYD3. This family includes SPRY
domains found in Ran binding proteins (RBP or RanBPM) 9
and 10, SSH4 (suppressor of SHR3 null mutation protein
4), SPRY domain-containing protein 3 (SPRYD3) as well
as HECT, a C-terminal catalytic domain of a subclass of
ubiquitin-protein ligase (E3). RanBP9 and RanBP10 act
as androgen receptor (AR) coactivators. Both consist of
the N-terminal proline- and glutamine-rich regions, the
SPRY domain, and LisH-CTLH and CRA motifs. The SPRY
domain in SSH4 may be involved in cargo recognition,
either directly or by combination with other adaptors,
possibly leading to a higher selectivity. SPRYD3 is
highly expressed in most tissues in humans, possibly
involved in important cellular processes. HECT E3
mediates the direct transfer of ubiquitin from E2 to
substrate.
Length = 132
Score = 62.7 bits (153), Expect = 4e-14
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 28 ASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPG 74
SVRA HPIPP ++YFEV I+ G G + IG +NR+PG
Sbjct: 1 GSVRADHPIPPKVPVFYFEVTILDLGEKGIVSIGFCTSGFPLNRMPG 47
>gnl|CDD|240488 cd12908, SPRYD3, SPRY domain-containing protein 3. This family
contains SPRY domain-containing protein 3 (SPRYD3). In
humans, it is highly expressed in most tissues,
including brain, kidney, heart, intestine, skeletal
muscle, and testis. It also has cross-species
conservation, suggesting that it is likely to carry out
important cellular processes.
Length = 171
Score = 42.3 bits (100), Expect = 4e-06
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 20 HGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPG 74
HG D +A P+ P +YFEV+IV G G + IGL +D ++R PG
Sbjct: 17 HGNGIGDVGLAQARRPLSPM--NHYFEVEIVDPGERGAIAIGLVPKDYPLDRHPG 69
Score = 28.0 bits (63), Expect = 0.65
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 82 YFEVKIVSKGWDGYMGIGM 100
YFEV+IV G G + IG+
Sbjct: 39 YFEVEIVDPGERGAIAIGL 57
>gnl|CDD|240490 cd12910, SPRY_SSH4_like, SPRY domain in SSH4 and similar
proteins. This family includes SPRY domain in SSH4
(suppressor of SHR3 null mutation protein 4) and
similar proteins. SSH4 is a component of the
endosome-vacuole trafficking pathway that regulates
nutrient transport and may be involved in processes
determining whether plasma membrane proteins are
degraded or routed to the plasma membrane. The SPRY
domain in SSH4 may be involved in cargo recognition,
either directly or by combination with other adaptors,
possibly leading to a higher selectivity. In yeast,
SSH4 and the homologous protein EAR1 (endosomal adapter
of RSP5) recruit Rsp5p, an essential ubiquitin ligase
of the Nedd4 family, and assist it in its function at
multivesicular bodies by directing the ubiquitylation
of specific cargoes.
Length = 191
Score = 32.3 bits (74), Expect = 0.024
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 29 SVRATHPIPPSCG-LYYFEVKIVSKGR-DGYMGIGLSAQDVNMNRLPG 74
SV+ P+P YFEVKI R D + IG + + RLPG
Sbjct: 42 SVQTNLPLPTGRNKTIYFEVKIYDLPRDDTSVAIGFATKPYPPFRLPG 89
>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor.
Domain of unknown function. Distant homologues are
domains in butyrophilin/marenostrin/pyrin homologues.
Length = 122
Score = 31.1 bits (71), Expect = 0.035
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 40 CGLYYFEVKIVSKGRDGYMGIGLSAQDVN--MNRLPGK 75
G +YFEV+I G+ +G++ + V L G+
Sbjct: 1 SGRHYFEVEIGDG---GHWRVGVATKSVPRGYFALLGE 35
>gnl|CDD|240493 cd13735, SPRY_HECT_like, SPRY domain in HECT E3. This domain
consists of the SPRY subdomain similar to those found
at the N-terminus of the HECT (homologous to the E6AP
carboxyl terminus) protein, a C-terminal catalytic
domain of a subclass of ubiquitin-protein ligase (E3).
HECT E3 binds specific ubiquitin-conjugating enzymes
(E2), accepts ubiquitin from E2, transfers ubiquitin to
substrate lysine side chains, and transfers additional
ubiquitin molecules to the end of growing ubiquitin
chains. It has a prominent role in protein trafficking
and immune response, and is involved in crucial
signaling pathways implicated in tumorigenesis.
Length = 150
Score = 31.3 bits (71), Expect = 0.043
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 30 VRATHPIPPSCGLYYFEVKIVSKGRDG 56
+ A PIP +Y+EV+IVS G
Sbjct: 5 IYANSPIPVQAPSFYWEVEIVSLGETD 31
>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria. This family
contains SPRY-like domains that are found only in
bacterial and are mostly uncharacterized. SPRY domains,
first identified in the SP1A kinase of Dictyostelium
and rabbit Ryanodine receptor (hence the name), are
homologous to B30.2. SPRY domains have been identified
in at least 11 eukaryotic protein families, covering a
wide range of functions, including regulation of
cytokine signaling (SOCS), RNA metabolism (DDX1 and
hnRNP), immunity to retroviruses (TRIM5alpha),
intracellular calcium release (ryanodine receptors or
RyR) and regulatory and developmental processes (HERC1
and Ash2L).
Length = 128
Score = 29.4 bits (66), Expect = 0.15
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 41 GLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPGKYLS 78
G +Y+EV +VS GIG++ V +N G LS
Sbjct: 1 GKWYWEVTVVSSTSSSAAGIGVAPAAVTLNNGLGIELS 38
Score = 26.3 bits (58), Expect = 2.5
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 82 YFEVKIVSKGWDGYMGIG 99
Y+EV +VS GIG
Sbjct: 4 YWEVTVVSSTSSSAAGIG 21
>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2. This SPRY domain is
found at the C-terminus of Ash2 (absent, small, or
homeotic discs 2) -like proteins, core components of
all mixed-lineage leukemia (MLL) family histone
methyltransferases. Ash2 is a member of the trithorax
group of transcriptional regulators of the Hox genes.
Recent studies show that the SPRY domain of Ash2
mediates the interaction with RbBP5 and has an
important role in regulating the methyltransferase
activity of MLL complexes. In yeast, Ash2 is involved
in histone methylation and is required for the earliest
stages of embryogenesis.
Length = 149
Score = 29.0 bits (66), Expect = 0.26
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 29 SVRATHPIPPSCGLYYFEVKIVSKGRDG 56
RA H + G +YFEVKI+ G +
Sbjct: 18 MARANHGV--REGKWYFEVKILEGGGET 43
>gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and
other proteins.
Length = 312
Score = 29.1 bits (66), Expect = 0.32
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 35 PIPPSCGLYYFEVKIVSKGRDGYMGI 60
P + G Y + +++VS D Y+G
Sbjct: 281 TAPATEGNYQYTLRLVS---DSYLGC 303
>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional.
Length = 286
Score = 29.0 bits (64), Expect = 0.36
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 18 LGHGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPGKYL 77
+ G H+ A S + P+ +C +V V + + MG+ +S V+ LP +
Sbjct: 45 ISSGPKHQSAKSAKPDSPVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIVSEANLPTAFA 104
Query: 78 SCGLYFEVKIVSKGWDGY 95
S ++ E +DGY
Sbjct: 105 SIPVFRE---YIDTFDGY 119
>gnl|CDD|216029 pfam00622, SPRY, SPRY domain. SPRY Domain is named from SPla and
the RYanodine Receptor. Domain of unknown function.
Distant homologues are domains in
butyrophilin/marenostrin/pyrin homologues.
Length = 125
Score = 28.5 bits (64), Expect = 0.40
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 40 CGLYYFEVKIVSKGRDGYMGIGLSAQDVNMN--RLPGK 75
G +YFEV++ + G G++ +G + + V RL G
Sbjct: 1 SGKHYFEVEVDTGG-GGHVRVGWATKSVKKPGFRLLGD 37
>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear
ribonucleoprotein U-like (hnRNP) protein 1. This
domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of heterogeneous nuclear
ribonucleoprotein U-like (hnRNP) protein 1 (also known
as HNRPUL1 ) which is a major constituent of nuclear
matrix or scaffold and binds directly to DNA sequences
through the N-terminal acidic region named serum
amyloid P (SAP). Its function is specifically modulated
by E1B-55kDa in adenovirus-infected cells. HNRPUL1 also
participates in ATR protein kinase signaling pathways
during adenovirus infection. Two transcript variants
encoding different isoforms have been found for this
gene. When associated with bromodomain-containing
protein 7 (BRD7), it activates transcription of
glucocorticoid-responsive promoter in the absence of
ligand-stimulation.
Length = 176
Score = 28.3 bits (64), Expect = 0.58
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 28 ASVRATHPIPPSCGLYYFEVKIVSK 52
A RAT+ + G FEVK++
Sbjct: 34 AGARATYGV--RKGKVCFEVKVLEN 56
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 27.6 bits (61), Expect = 1.1
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 7 RELSQTSV---IIGLGHGKTHKDAASVRATHPIPPSCGLY 43
R+L +V +IG+G G H+ + P C Y
Sbjct: 172 RKLKDRNVKLAVIGIGQGINHQFNRLLAGCRPREGKCKFY 211
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit
19. Med19 represents a family of conserved proteins
which are members of the multi-protein co-activator
Mediator complex. Mediator is required for activation
of RNA polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 27.1 bits (60), Expect = 1.3
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 15 IIGLGHGKTHKDAASVRATHPIPPSCG 41
+ G+ + +S+R+ PP G
Sbjct: 50 LPGMIDLPGTPENSSLRSLIEKPPIGG 76
>gnl|CDD|240451 cd11709, SPRY, SPRY domain. SPRY domains, first identified in
the SP1A kinase of Dictyostelium and rabbit Ryanodine
receptor (hence the name), are homologous to B30.2.
SPRY domains have been identified in at least 11
protein families, covering a wide range of functions,
including regulation of cytokine signaling (SOCS), RNA
metabolism (DDX1 and hnRNP), immunity to retroviruses
(TRIM5alpha), intracellular calcium release (ryanodine
receptors or RyR) and regulatory and developmental
processes (HERC1 and Ash2L). B30.2 also contains
residues in the N-terminus that form a distinct PRY
domain structure; i.e. B30.2 domain consists of PRY and
SPRY subdomains. B30.2 domains comprise the C-terminus
of three protein families: BTNs (receptor glycoproteins
of immunoglobulin superfamily); several TRIM proteins
(composed of RING/B-box/coiled-coil or RBCC core);
Stonutoxin (secreted poisonous protein of the stonefish
Synanceia horrida). While SPRY domains are
evolutionarily ancient, B30.2 domains are a more recent
adaptation where the SPRY/PRY combination is a possible
component of immune defense. Mutations found in the
SPRY-containing proteins have shown to cause
Mediterranean fever and Opitz syndrome.
Length = 118
Score = 26.6 bits (59), Expect = 1.7
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 GLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPG 74
G +Y+EV++ S G G + +G + + +++ G
Sbjct: 1 GKWYYEVRVDS-GNGGLIQVGWATKSFSLDGERG 33
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 26.8 bits (59), Expect = 1.9
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 14 VIIGLG--H--GKTHKDAASVRATHPIPPS 39
VIIG H G+ H A SVR P PPS
Sbjct: 157 VIIGQDPYHQPGQAHGLAFSVRPGTPAPPS 186
>gnl|CDD|173544 PTZ00351, PTZ00351, adenylosuccinate synthetase; Provisional.
Length = 710
Score = 26.6 bits (58), Expect = 2.5
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 5 YKRELSQTSVIIGLGHGKTHKDAASVRATHPIPPSCGLYYFE--VKIVSKGRDGYMGIGL 62
Y E Q V +G +K+ +RA P+P LY+ VK++ RD +
Sbjct: 613 YNPEGKQVDV-----NGHVYKNGDIIRAGDPVPSEPALYHCHPIVKLIDGWRDNPIAAAK 667
Query: 63 SAQDVNMNRLPGKYLSCGLYF-EVKIVSKG 91
++ + R + LS YF KI+S G
Sbjct: 668 RRRNAPLPRGVCELLSTIEYFTNCKILSIG 697
>gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine
signaling 3 (SOCS3) family. The SPRY domain-containing
SOCS box protein family (SPSB1-4, also known as SSB-1
to -4) is composed of a central SPRY protein
interaction domain and a C-terminal SOCS box. All four
SPSB proteins interact with c-Met, the hepatocyte
growth factor receptor, but SOCS3 regulates cellular
response to a variety of cytokines such as leukemia
inhibitory factor (LIF) and interleukin 6. SOCS3, along
with SOCS1, are expressed by immune cells and cells of
the central nervous system (CNS) and have the potential
to impact immune processes within the CNS. In non-small
cell lung cancer (NSCLC), SOCS3 is silenced and
proline-rich tyrosine kinase 2 (Pyk2) is
over-expressed; it has been suggested that SOCS3 could
be an effective way to prevent the progression of NSCLC
due to its role in regulating Pyk2 expression.
Length = 187
Score = 26.4 bits (59), Expect = 2.7
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 28 ASVRATHPIPPSCGLYYFEVKIVSK--GRDGYMGIGLSAQDVNMNRLPGKYLSCGL 81
A+VR + P+ G +Y+E+K++S G M +G+ D +++ +Y C L
Sbjct: 33 AAVRGSKPLTEG-GQHYWEIKMLSPVYGTS--MMVGIGTDDADLHA--YRYEFCSL 83
>gnl|CDD|234443 TIGR04034, export_SdpA, antimicrobial peptide system protein, SdpA
family. Members of this protein family resemble SdpA
(Sporulation Delaying Protein A), a protein associated
with production and export of the cannibalism peptide
SdpC in Bacillus subtilis. Similar proteins are found in
Myxococcus xanthus, Stigmatella aurantiaca DW4/3-1,
Streptomyces sp. ACTE, etc.
Length = 157
Score = 26.0 bits (57), Expect = 3.0
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 22 KTHKDAASVRATHPIPPSCGLYYF 45
K K +++ T P P CG Y
Sbjct: 104 KALKPQKTIKNTAPRPLLCGKYII 127
>gnl|CDD|198425 cd10027, UDG_F1, Family 1 of Uracil-DNA glycosylase (UDG)
enzymes. Uracil-DNA glycosylases (UDGs) are DNA repair
enzymes that catalyze the removal of mismatched uracil
from DNA to initiate DNA base excision repair pathway.
Family 1 enzymes are active against uracil in both
ssDNA and dsDNA, and recognize uracil explicitly in an
extrahelical conformation via a combination of protein
and bound-water interactions. Family 1 enzymes are
present in Eubacteria, Eukarya and in some eukaryotic
viruses. Members of Family 1 are the most efficient
Uracil-DNA glycosylases. Uracil in DNA can arise as a
result of mis-incorporation of dUMP residues by DNA
polymerase or deamination of cytosine. Uracil mispaired
with guanine in DNA is one of the major pro-mutagenic
events, causing G:C->A:T mutations. Thus, UDG is an
essential enzyme for maintaining the integrity of
genetic information. More than five UDG families have
been characterized so far; these families share similar
overall folds, and common active site motifs. However,
they may differ in substrate preferences.
Length = 201
Score = 25.9 bits (58), Expect = 4.0
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 9 LSQTSVIIGLG----HGKTHKD--AASVRATHPIPPS 39
+ V+I LG HG A SV +PPS
Sbjct: 35 PDEVKVVI-LGQDPYHGPGQAHGLAFSVPKGVKLPPS 70
>gnl|CDD|233060 TIGR00628, ung, uracil-DNA glycosylase. All proteins in this
family for which functions are known are uracil-DNA
glycosylases that function in base excision repair.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 212
Score = 25.6 bits (57), Expect = 4.0
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 14 VIIGL----GHGKTHKDAASVRATHPIPPS 39
VI+G G G+ H A SV+ PIPPS
Sbjct: 56 VILGQDPYHGPGQAHGLAFSVKPGVPIPPS 85
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 26.0 bits (57), Expect = 5.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 8 ELSQTSVIIGLGHGKTHKDAASVRATH 34
E+ I+GL HGK ++ S+R H
Sbjct: 503 EIENIKQILGLQHGKQYESVKSLRYGH 529
>gnl|CDD|177588 PHA03347, PHA03347, uracil DNA glycosylase; Provisional.
Length = 252
Score = 25.4 bits (56), Expect = 6.2
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 14 VIIGLGHGKTHKDAA-----SVRATHPIPPSCGLYYFEVK 48
V+I LG H A SV P+PPS + E+
Sbjct: 81 VVI-LGQDPYHGGQANGLAFSVAYGFPVPPSLRNIFAELH 119
>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene
DDX1. This SPRY domain is associated with the DEAD box
gene, DDX1, an RNA-dependent ATPase involved in HIV-1
Rev function and virus replication. It is suggested
that DDX1 acts as a cellular cofactor by promoting
oligomerization of Rev on the Rev response element
(RRE). DDX1 RNA is overexpressed in breast cancer, data
showing a strong and independent association between
poor prognosis and deregulation of the DEAD box protein
DDX1, thus potentially serving as an effective
prognostic biomarker for early recurrence in primary
breast cancer. DDX1 also interacts with RelA and
enhances nuclear factor kappaB-mediated transcription.
DEAD-box proteins are associated with all levels of RNA
metabolism and function, and have been implicated in
translation initiation, transcription, RNA splicing,
ribosome assembly, RNA transport, and RNA decay.
Length = 155
Score = 24.8 bits (55), Expect = 8.8
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 30 VRATHPIPPSCGLYYFEVKIVSKG 53
RAT + G YY+EV + +G
Sbjct: 30 CRATKGVKGK-GKYYYEVTVTDEG 52
>gnl|CDD|237193 PRK12764, PRK12764, hypothetical protein; Provisional.
Length = 500
Score = 25.1 bits (55), Expect = 9.1
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 51 SKGRDGYMGIG---LSAQDVNMNRL 72
SKG DG+ IG +SA+ V+ +L
Sbjct: 122 SKGGDGFTPIGPALISARGVDPAQL 146
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.434
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,043,724
Number of extensions: 399971
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 35
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)