RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17212
(102 letters)
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription,
SPRY domain, prote binding, histone methylation, RBBP5,
DPY-30, nuclear; 2.07A {Homo sapiens}
Length = 213
Score = 59.9 bits (145), Expect = 2e-12
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 22 KTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPGK 75
K + VRA+H + G +YFE+ + D +G S N+ G
Sbjct: 34 VGEKGYSMVRASHGV--RKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGY 85
Score = 31.0 bits (70), Expect = 0.044
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 82 YFEVKIVSKGWDGYMGIGMS 101
YFE+ + D +G S
Sbjct: 54 YFEITVDEMPPDTAARLGWS 73
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on
protein structural and functional analyses; 2.00A {Homo
sapiens}
Length = 171
Score = 55.7 bits (134), Expect = 3e-11
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 24 HKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNRLPG 74
+ A+ P+ YFEV IV G G + +GL Q +++ PG
Sbjct: 24 SGEVGCYVASRPLT--KDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPG 72
Score = 29.9 bits (67), Expect = 0.091
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 73 PGKYLSCGLYFEVKIVSKGWDGYMGIGMS 101
YFEV IV G G + +G+
Sbjct: 38 KDSN-----YFEVSIVDSGVRGTIAVGLV 61
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription
regulation, transcription; 1.79A {Homo sapiens} PDB:
3f2o_A 2fnj_A 2v24_A 2ihs_A
Length = 212
Score = 45.0 bits (106), Expect = 4e-07
Identities = 6/52 (11%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 20 HGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNR 71
+ ++R + GL+ +++ + R + +G++ D ++
Sbjct: 56 RHPVAQSTDAIRGKVGY--TRGLHVWQITWAMRQRGTHAVVGVATADAPLHS 105
Score = 26.6 bits (58), Expect = 1.3
Identities = 3/26 (11%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 77 LSCGL-YFEVKIVSKGWDGYMGIGMS 101
+ GL +++ + + +G++
Sbjct: 72 YTRGLHVWQITWAMRQRGTHAVVGVA 97
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus,
apoptosis, UBL conjugation pathwayc, CL transcription
regulation, transcription, phosphoprotein; 1.80A {Homo
sapiens} PDB: 3ek9_A
Length = 217
Score = 42.8 bits (100), Expect = 3e-06
Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 25 KDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNR 71
+ R GL+ +E+ + R + +G++ +
Sbjct: 71 QSTDGARGKRGYS--RGLHAWEISWPLEQRGTHAVVGVATALAPLQT 115
Score = 24.7 bits (53), Expect = 7.1
Identities = 3/29 (10%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 73 PGKYLSCGLYFEVKIVSKGWDGYMGIGMS 101
G + +E+ + + +G++
Sbjct: 84 RGLH-----AWEISWPLEQRGTHAVVGVA 107
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR
{Mus musculus} SCOP: b.29.1.22
Length = 226
Score = 39.4 bits (91), Expect = 5e-05
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 20 HGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNR 71
+ VR GL+ +E+ + R + +G++ +
Sbjct: 63 RRPVAQSTDGVRGKRGYSR--GLHAWEISWPLEQRGTHAVVGVATALAPLQA 112
>2e63_A KIAA1787 protein; structure genomics, neuralized domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 170
Score = 26.5 bits (58), Expect = 1.5
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 28 ASVRATHPIPPSCGLYYFEVKI--VSKGRDGYMGIGLSAQDVNMNRLPG 74
V + P+ F V+I G + IG++A D ++ P
Sbjct: 38 GLVLSREPLRDG---RVFTVRIDRKVNSWSGSIEIGVTALDPSVLDFPS 83
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration,
endonuclease magnesium, metal-binding, multifunctional
enzyme; 3.20A {Human immunodeficiency virus type 2}
PDB: 1e0e_A
Length = 210
Score = 24.3 bits (52), Expect = 7.5
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 18 LGHGKTHKDAASVRATHPIPP 38
H K H + + IP
Sbjct: 11 EEHEKYHSNVKELSHKFGIPN 31
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex,
covalently linked comple supercoiling; HET: DNA PTR
TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A*
1bjt_A 1bgw_A 2rgr_A*
Length = 757
Score = 24.6 bits (53), Expect = 8.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 8 ELSQTSVIIGLGHGKTHKDAASVR 31
E+ I+GL H K ++D S+R
Sbjct: 74 EIQAIKKIMGLQHRKKYEDTKSLR 97
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A
{Human herpesvirus 1} PDB: 1dml_B*
Length = 1193
Score = 24.4 bits (52), Expect = 8.6
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 75 KYLSCGLYFEVKIVSKGWD 93
KY G+ + K++ KG D
Sbjct: 898 KY--IGVIYGGKMLIKGVD 914
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.434
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,606,417
Number of extensions: 81546
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 13
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)