RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17212
         (102 letters)



>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 217

 Score = 40.1 bits (93), Expect = 8e-06
 Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 20 HGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMNR 71
               +    +R    +  + GL+ +E+   ++ R  +  +G+   D  ++ 
Sbjct: 47 RHPVAQSTDCIRGKVGL--TKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHS 96



 Score = 22.8 bits (48), Expect = 9.6
 Identities = 2/19 (10%), Positives = 9/19 (47%)

Query: 82  YFEVKIVSKGWDGYMGIGM 100
            +E+   ++    +  +G+
Sbjct: 69  IWEIYWPTRQRGTHAVVGV 87


>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
           protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 213

 Score = 39.1 bits (90), Expect = 2e-05
 Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 20  HGKTHKDAASVRATHPIPPSCGLYYFEVKIVSKGRDGYMGIGLSAQDVNMN 70
                +    VR       S GL+ +E+    + R  +  +G++     + 
Sbjct: 57  RRPVAQSTDGVRGKRGY--SRGLHAWEISWPLEQRGTHAVVGVATALAPLQ 105


>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 55

 Score = 23.3 bits (50), Expect = 2.7
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 4/24 (16%)

Query: 66 DVNMNRLPGKYLSCGLYFEVKIVS 89
          +V   R PG      LY+EV+I+S
Sbjct: 10 EVVRGRWPGS----SLYYEVEILS 29


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
          (residues 410-1202) {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 24.0 bits (51), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 8  ELSQTSVIIGLGHGKTHKDAASVR 31
          E+     I+GL H K ++D  S+R
Sbjct: 76 EIQAIKKIMGLQHRKKYEDTKSLR 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 401,434
Number of extensions: 15795
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 8
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)