BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17213
         (69 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X2H|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
           Alpha- 1,4-Glucan Lyase
 pdb|2X2H|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
           Alpha- 1,4-Glucan Lyase
 pdb|2X2H|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
           Alpha- 1,4-Glucan Lyase
 pdb|2X2H|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
           Alpha- 1,4-Glucan Lyase
 pdb|2X2I|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
           Alpha- 1,4-Glucan Lyase With Acarbose
 pdb|2X2I|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
           Alpha- 1,4-Glucan Lyase With Acarbose
 pdb|2X2I|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
           Alpha- 1,4-Glucan Lyase With Acarbose
 pdb|2X2I|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
           Alpha- 1,4-Glucan Lyase With Acarbose
 pdb|2X2J|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
           Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
 pdb|2X2J|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
           Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
 pdb|2X2J|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
           Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
 pdb|2X2J|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
           Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
          Length = 1027

 Score = 26.2 bits (56), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 24  CEPGTSVTLEGIVWHETEGTSVTLEG 49
           C+PG + T EG +  ET+  SV + G
Sbjct: 113 CDPGMTFTSEGFLTFETKDLSVIIYG 138


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.134    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,121,361
Number of Sequences: 62578
Number of extensions: 71440
Number of successful extensions: 137
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 1
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)