BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17213
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ULD9|ZN608_HUMAN Zinc finger protein 608 OS=Homo sapiens GN=ZNF608 PE=1 SV=4
Length = 1512
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/41 (70%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Query: 12 VGTITEPECLGPCEPGTSVTLEGIVWHETEGTSVTLEGIVW 52
VG +TEPECLGPCEPGTSV LEGIVWHETE V + + W
Sbjct: 357 VGVVTEPECLGPCEPGTSVNLEGIVWHETE-EGVLVVNVTW 396
>sp|Q56A10|ZN608_MOUSE Zinc finger protein 608 OS=Mus musculus GN=Znf608 PE=2 SV=1
Length = 1511
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/41 (70%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Query: 12 VGTITEPECLGPCEPGTSVTLEGIVWHETEGTSVTLEGIVW 52
VG +TEPECLGPCEPGTSV LEGIVWHETE V + + W
Sbjct: 356 VGVVTEPECLGPCEPGTSVNLEGIVWHETE-EGVLVVNVTW 395
>sp|O15014|ZN609_HUMAN Zinc finger protein 609 OS=Homo sapiens GN=ZNF609 PE=1 SV=2
Length = 1411
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/30 (83%), Positives = 25/30 (83%)
Query: 12 VGTITEPECLGPCEPGTSVTLEGIVWHETE 41
V TEPECLGPCEPGTSV LEGIVW ETE
Sbjct: 294 VALATEPECLGPCEPGTSVNLEGIVWQETE 323
>sp|Q8BZ47|ZN609_MOUSE Zinc finger protein 609 OS=Mus musculus GN=Znf609 PE=1 SV=2
Length = 1413
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/30 (83%), Positives = 25/30 (83%)
Query: 12 VGTITEPECLGPCEPGTSVTLEGIVWHETE 41
V TEPECLGPCEPGTSV LEGIVW ETE
Sbjct: 294 VALATEPECLGPCEPGTSVNLEGIVWQETE 323
>sp|B9L2M4|RL21_THERP 50S ribosomal protein L21 OS=Thermomicrobium roseum (strain ATCC
27502 / DSM 5159 / P-2) GN=rplU PE=3 SV=1
Length = 107
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 11 SVGTITEPECLGPCEPGTSVTLEGIVWHETEGT 43
VG + E E L P EPG +VTLE ++ E +GT
Sbjct: 15 RVGDVIEVEKL-PVEPGQAVTLEEVLLVERDGT 46
>sp|P73911|KATG_SYNY3 Catalase-peroxidase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=katG PE=1 SV=1
Length = 754
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 21 LGPCEPGTSVTLEGIVWHETEGTSVTLEGIVWHETEGKGISQ 62
+G C + L G E EG V +G+ WH GKG+ +
Sbjct: 292 VGKCHGNSKAELIG---PEPEGADVVEQGLGWHNQNGKGVGR 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,759,313
Number of Sequences: 539616
Number of extensions: 821868
Number of successful extensions: 1514
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1504
Number of HSP's gapped (non-prelim): 11
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)