Query psy17213
Match_columns 69
No_of_seqs 22 out of 24
Neff 2.0
Searched_HMMs 29240
Date Sat Aug 17 00:45:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gjt_B Poliovirus receptor-rel 56.3 25 0.00087 19.9 4.9 38 24-64 12-49 (123)
2 2vl6_A SSO MCM N-TER, minichro 45.8 13 0.00044 25.3 2.4 25 12-36 213-237 (268)
3 1ltl_A DNA replication initiat 45.1 13 0.00045 25.6 2.3 25 12-36 200-224 (279)
4 2auv_A Potential NAD-reducing 44.7 7 0.00024 22.2 0.8 21 14-34 47-67 (85)
5 3r0n_A Poliovirus receptor-rel 36.7 54 0.0019 18.0 4.8 40 24-65 14-53 (128)
6 3i9v_2 NADH-quinone oxidoreduc 34.0 6.6 0.00023 26.3 -0.6 25 14-38 118-142 (181)
7 1dl0_A J-atracotoxin-HV1C; neu 32.7 15 0.0005 20.5 0.8 10 22-31 14-23 (37)
8 4frw_A Poliovirus receptor-rel 25.2 96 0.0033 17.3 5.3 28 26-56 13-40 (218)
9 2hrv_A 2A cysteine proteinase; 24.2 22 0.00076 24.2 0.7 8 21-28 98-105 (142)
10 1z8r_A Coxsackievirus B4 polyp 22.0 26 0.00089 24.5 0.7 8 21-28 118-125 (166)
No 1
>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}
Probab=56.30 E-value=25 Score=19.90 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=22.7
Q ss_pred CCCCcEeeeeeeEeeecCCeEEEEEeeEEeeccCCceeeEE
Q psy17213 24 CEPGTSVTLEGIVWHETEGTSVTLEGIVWHETEGKGISQSL 64 (69)
Q Consensus 24 CEpGTsV~LEGIVW~Etegg~l~vvnVtWR~teg~~~~~~~ 64 (69)
-..|.+|.|.|..-....... ..|.|.....+.-.+.+
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~---~~V~W~k~~~~~~~~~~ 49 (123)
T 4gjt_B 12 VVLGQDAKLPCFYRGDSGEQV---GQVAWARVDAGEGAQEL 49 (123)
T ss_dssp CCTTSEEEECCEECCCTTCCE---EEEEEEECCCSSCCCEE
T ss_pred EEcCCCEEEEEEEeCCccCce---eEEEEEEcCCCCCccee
Confidence 357999999998754433332 36889655443333333
No 2
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=45.82 E-value=13 Score=25.29 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.5
Q ss_pred eeeccCCCccccCCCCcEeeeeeeE
Q psy17213 12 VGTITEPECLGPCEPGTSVTLEGIV 36 (69)
Q Consensus 12 ~~t~TEp~clGPCEpGTsV~LEGIV 36 (69)
+-.+-+.|+...|.||+.|.+-||.
T Consensus 213 i~v~l~~dLvd~~~PGDrV~vtGI~ 237 (268)
T 2vl6_A 213 LEIILEDDLVDSARPGDRVKVTGIL 237 (268)
T ss_dssp EEEEEEGGGTTSSCTTCEEEEEEEE
T ss_pred EEEEEccCccCcccCCCEEEEEEEE
Confidence 4455688999999999999999987
No 3
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=45.09 E-value=13 Score=25.63 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.6
Q ss_pred eeeccCCCccccCCCCcEeeeeeeE
Q psy17213 12 VGTITEPECLGPCEPGTSVTLEGIV 36 (69)
Q Consensus 12 ~~t~TEp~clGPCEpGTsV~LEGIV 36 (69)
+-.+-+.|+...|.||+.|.+-||.
T Consensus 200 i~V~l~~dLvd~~~PGDrV~vtGI~ 224 (279)
T 1ltl_A 200 ITVVLEDDLVDTLTPGDIVRVTGTL 224 (279)
T ss_dssp EEEEEEGGGTTCCCTTCEEEEEEEE
T ss_pred EEEEEcccccCccCCCCEEEEEEEE
Confidence 4455688999999999999999997
No 4
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=44.70 E-value=7 Score=22.23 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=17.6
Q ss_pred eccCCCccccCCCCcEeeeee
Q psy17213 14 TITEPECLGPCEPGTSVTLEG 34 (69)
Q Consensus 14 t~TEp~clGPCEpGTsV~LEG 34 (69)
++.+-.|+|.|.-|=.|.+.|
T Consensus 47 ~l~~~~ClG~C~~~P~v~V~~ 67 (85)
T 2auv_A 47 SIDTLRCVGGCALAPIVMVGE 67 (85)
T ss_dssp CCBSSSSSSSCTTSCCCEEGG
T ss_pred EEEECCccCcCCCCCEEEECC
Confidence 456778999999998888876
No 5
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A
Probab=36.74 E-value=54 Score=18.04 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=25.1
Q ss_pred CCCCcEeeeeeeEeeecCCeEEEEEeeEEeeccCCceeeEEE
Q psy17213 24 CEPGTSVTLEGIVWHETEGTSVTLEGIVWHETEGKGISQSLF 65 (69)
Q Consensus 24 CEpGTsV~LEGIVW~Etegg~l~vvnVtWR~teg~~~~~~~~ 65 (69)
-..|.+|.|.|.......... ...|.|.....++-.+.++
T Consensus 14 ~~~G~~v~L~C~~~~~~~~~~--~~~v~W~k~~~~~~~~~~~ 53 (128)
T 3r0n_A 14 GQLGGTVELPCHLLPPVPGLY--ISLVTWQRPDAPANHQNVA 53 (128)
T ss_dssp CCTTSCEEECCEEESCCTTCE--EEEEEEECTTSCGGGCEEE
T ss_pred EEcCCCEEEEEEeecCCCCCc--EEEEEEEEeCCCCCCeeEE
Confidence 357999999999875443312 2378998765444344433
No 6
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=34.01 E-value=6.6 Score=26.35 Aligned_cols=25 Identities=20% Similarity=0.603 Sum_probs=19.2
Q ss_pred eccCCCccccCCCCcEeeeeeeEee
Q psy17213 14 TITEPECLGPCEPGTSVTLEGIVWH 38 (69)
Q Consensus 14 t~TEp~clGPCEpGTsV~LEGIVW~ 38 (69)
++.+-.|+|.|.-|=.|.+++.+|.
T Consensus 118 tl~~~~ClG~C~~gPvv~V~~~~~y 142 (181)
T 3i9v_2 118 SVQKVECLGSCHTAPVIQVNDEPYV 142 (181)
T ss_dssp EEEEESCCSCGGGCSCEECSSSCCB
T ss_pred EEEEcCCCCccCCCCEEEECCEEEE
Confidence 3456789999999988888776453
No 7
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=32.71 E-value=15 Score=20.52 Aligned_cols=10 Identities=60% Similarity=1.102 Sum_probs=8.3
Q ss_pred ccCCCCcEee
Q psy17213 22 GPCEPGTSVT 31 (69)
Q Consensus 22 GPCEpGTsV~ 31 (69)
=||-||||-.
T Consensus 14 cpccpgtsck 23 (37)
T 1dl0_A 14 CPCCPGTSCK 23 (37)
T ss_dssp CCCCTTEEEE
T ss_pred cCCCCCcccc
Confidence 4899999975
No 8
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=25.23 E-value=96 Score=17.27 Aligned_cols=28 Identities=18% Similarity=0.410 Sum_probs=17.1
Q ss_pred CCcEeeeeeeEeeecCCeEEEEEeeEEeecc
Q psy17213 26 PGTSVTLEGIVWHETEGTSVTLEGIVWHETE 56 (69)
Q Consensus 26 pGTsV~LEGIVW~Etegg~l~vvnVtWR~te 56 (69)
.|.+|.|.|.+-.. +.--+ ..|+|.+..
T Consensus 13 ~G~~v~L~C~v~~~-~~~~~--~~V~W~k~~ 40 (218)
T 4frw_A 13 LGQDAKLPCFYRGD-SGEQV--GQVAWARVD 40 (218)
T ss_dssp TTSCEEECCEECCC-TTCEE--EEEEEEEEC
T ss_pred cCCCEEEEEEEEcC-CCCCc--cEEEEEECC
Confidence 58889999877532 22222 368896543
No 9
>2hrv_A 2A cysteine proteinase; hydrolase (cysteine proteinase); 1.95A {Human rhinovirus 2} SCOP: b.47.1.4
Probab=24.16 E-value=22 Score=24.24 Aligned_cols=8 Identities=75% Similarity=1.693 Sum_probs=7.0
Q ss_pred cccCCCCc
Q psy17213 21 LGPCEPGT 28 (69)
Q Consensus 21 lGPCEpGT 28 (69)
.||||||.
T Consensus 98 ~G~~epGD 105 (142)
T 2hrv_A 98 EGPCEPGD 105 (142)
T ss_dssp ECCCCTTC
T ss_pred EcCCCCCC
Confidence 69999986
No 10
>1z8r_A Coxsackievirus B4 polyprotein; beta barrel coordinated zinc ION, hydrolase; NMR {Human coxsackievirus B4}
Probab=22.04 E-value=26 Score=24.55 Aligned_cols=8 Identities=50% Similarity=0.808 Sum_probs=7.1
Q ss_pred cccCCCCc
Q psy17213 21 LGPCEPGT 28 (69)
Q Consensus 21 lGPCEpGT 28 (69)
.||||||.
T Consensus 118 ~G~~epGD 125 (166)
T 1z8r_A 118 TGFSEPGD 125 (166)
T ss_dssp ECSSSCCC
T ss_pred ecCCCCCC
Confidence 69999986
Done!