Query psy17213
Match_columns 69
No_of_seqs 22 out of 24
Neff 2.0
Searched_HMMs 13730
Date Sat Aug 17 00:45:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17213.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17213hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1neua_ b.1.1.1 (A:) Myelin me 55.9 9.8 0.00071 19.9 4.0 35 26-62 13-48 (119)
2 d1ltla_ b.40.4.11 (A:) DNA rep 54.8 3.1 0.00023 26.4 2.1 22 15-36 195-216 (239)
3 d2atpb1 b.1.1.1 (B:1-115) CD8 41.0 20 0.0015 19.2 3.9 32 24-60 10-42 (115)
4 d1kzla1 b.43.4.3 (A:1-92) Ribo 32.3 11 0.0008 21.1 1.8 15 20-34 72-86 (92)
5 d1fo0a_ b.1.1.1 (A:) T-cell an 31.6 35 0.0026 18.1 4.0 33 24-61 11-44 (115)
6 d1dl0a_ g.3.6.2 (A:) J-atracot 30.9 11 0.00079 19.7 1.4 12 22-33 14-25 (37)
7 d1ypqa1 d.169.1.1 (A:140-270) 30.2 7.6 0.00056 20.5 0.8 8 20-27 1-8 (131)
8 d2ak4d1 b.1.1.1 (D:1-116) T-ce 29.7 39 0.0028 18.0 3.9 32 25-61 13-45 (114)
9 d1ymmd1 b.1.1.1 (D:9-104) T-ce 28.2 16 0.0012 19.7 2.0 30 25-61 6-36 (96)
10 d1m2da_ c.47.1.11 (A:) Thiored 27.3 7.2 0.00052 21.8 0.3 22 14-35 47-70 (101)
11 d1akjd_ b.1.1.1 (D:) CD8 {Huma 26.6 44 0.0032 18.0 3.7 33 23-60 11-44 (114)
12 d1kzla2 b.43.4.3 (A:93-202) Ri 25.1 17 0.0012 21.2 1.8 17 17-33 75-91 (110)
13 d1ypzf1 b.1.1.1 (F:1-120) T-ce 24.9 40 0.0029 18.8 3.4 32 25-60 14-46 (120)
14 d2hrva_ b.47.1.4 (A:) 2A cyste 24.0 11 0.00078 24.3 0.7 8 21-28 98-105 (139)
15 d1fnla2 b.1.1.4 (A:87-175) Fc 22.9 33 0.0024 17.7 2.6 30 25-60 15-44 (89)
16 d1zo2a1 d.17.4.2 (A:10-126) Nu 20.3 68 0.005 17.6 4.9 40 27-66 57-99 (117)
No 1
>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=55.91 E-value=9.8 Score=19.90 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=20.5
Q ss_pred CCcEeeeeeeEeeecCCeEEEEEeeEEeec-cCCceee
Q psy17213 26 PGTSVTLEGIVWHETEGTSVTLEGIVWHET-EGKGISQ 62 (69)
Q Consensus 26 pGTsV~LEGIVW~Etegg~l~vvnVtWR~t-eg~~~~~ 62 (69)
.|.+|.|.|-.....+.... ..|.|... .+++..+
T Consensus 13 ~G~~v~L~C~~~~~~~~~~~--~~v~W~~~~~~~~~~~ 48 (119)
T d1neua_ 13 VGSQVTLHCSFWSSEWVSDD--ISFTWRYQPEGGRDAI 48 (119)
T ss_dssp TTSCEEECCEEECSSCCCSC--CEEEEEEEETTCCCCE
T ss_pred eCCCEEEEEEEEecCCCCcc--EEEEEEEecccCCcee
Confidence 48899999976544333332 37889544 3444333
No 2
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=54.78 E-value=3.1 Score=26.44 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.9
Q ss_pred ccCCCccccCCCCcEeeeeeeE
Q psy17213 15 ITEPECLGPCEPGTSVTLEGIV 36 (69)
Q Consensus 15 ~TEp~clGPCEpGTsV~LEGIV 36 (69)
+=+.|..+.|.||+.|.+-||.
T Consensus 195 ~l~~dlvd~~~pGd~V~i~GI~ 216 (239)
T d1ltla_ 195 VLEDDLVDTLTPGDIVRVTGTL 216 (239)
T ss_dssp EEEGGGTTCCCTTCEEEEEEEE
T ss_pred EEeccccCccCCCCEEEEEEEE
Confidence 4488999999999999999997
No 3
>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}
Probab=40.96 E-value=20 Score=19.25 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=19.5
Q ss_pred CCCCcEeeeeeeEeeecCCeEEEEEeeEEe-eccCCce
Q psy17213 24 CEPGTSVTLEGIVWHETEGTSVTLEGIVWH-ETEGKGI 60 (69)
Q Consensus 24 CEpGTsV~LEGIVW~Etegg~l~vvnVtWR-~teg~~~ 60 (69)
..+|.+|.|.|-+-.-.... +|.|- .+.|++-
T Consensus 10 v~~G~sv~l~C~~~~~~~~~-----~v~Wyrq~~~~~~ 42 (115)
T d2atpb1 10 VQTNHTAKMSCEVKSISKLT-----SIYWLRERQDPKD 42 (115)
T ss_dssp ECTTSCEEEEEECCSSCCSS-----EEEEEEEEECSSC
T ss_pred EcCCCCEEEEEEEeCCCCCC-----ceEEEEeecCCCC
Confidence 57899999999875322221 45673 4444443
No 4
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=32.26 E-value=11 Score=21.06 Aligned_cols=15 Identities=47% Similarity=0.869 Sum_probs=13.0
Q ss_pred ccccCCCCcEeeeee
Q psy17213 20 CLGPCEPGTSVTLEG 34 (69)
Q Consensus 20 clGPCEpGTsV~LEG 34 (69)
-+|-..+|..||||-
T Consensus 72 ~l~~~~~G~~VNlE~ 86 (92)
T d1kzla1 72 NLGQCKAGDPVNLER 86 (92)
T ss_dssp SGGGCCTTCEEEEEE
T ss_pred chhhCcCCCEEEeCc
Confidence 478899999999983
No 5
>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}
Probab=31.63 E-value=35 Score=18.12 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=19.2
Q ss_pred CCCCcEeeeeeeEeeecCCeEEEEEeeEE-eeccCCcee
Q psy17213 24 CEPGTSVTLEGIVWHETEGTSVTLEGIVW-HETEGKGIS 61 (69)
Q Consensus 24 CEpGTsV~LEGIVW~Etegg~l~vvnVtW-R~teg~~~~ 61 (69)
-.+|.+|.|.|.. .+..... .+-| |...|++..
T Consensus 11 ~~~G~~Vtl~C~~--~~~~~~~---~i~WYrQ~~g~~~~ 44 (115)
T d1fo0a_ 11 VMEKTTVTMDCVY--ETQDSSY---FLFWYKQTASGEIV 44 (115)
T ss_dssp EETTCCEEECCEE--CCCCSSC---EEEEEEECTTCCEE
T ss_pred EcCCCCEEEEEEE--cCCCCCC---CCEEEEeCCCCCCE
Confidence 3578899999863 2322221 3567 566666543
No 6
>d1dl0a_ g.3.6.2 (A:) J-atracotoxin-hv1c {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=30.86 E-value=11 Score=19.67 Aligned_cols=12 Identities=58% Similarity=0.985 Sum_probs=9.5
Q ss_pred ccCCCCcEeeee
Q psy17213 22 GPCEPGTSVTLE 33 (69)
Q Consensus 22 GPCEpGTsV~LE 33 (69)
-||-||||-.-|
T Consensus 14 cpccpgtsckae 25 (37)
T d1dl0a_ 14 CPCCPGTSCKAE 25 (37)
T ss_dssp CCCCTTEEEEEC
T ss_pred cCCCCCCceecc
Confidence 489999997654
No 7
>d1ypqa1 d.169.1.1 (A:140-270) Oxidised low density lipoprotein {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.16 E-value=7.6 Score=20.54 Aligned_cols=8 Identities=38% Similarity=1.182 Sum_probs=3.5
Q ss_pred ccccCCCC
Q psy17213 20 CLGPCEPG 27 (69)
Q Consensus 20 clGPCEpG 27 (69)
|.|||-+|
T Consensus 1 c~~~Cp~g 8 (131)
T d1ypqa1 1 CSAPCPQD 8 (131)
T ss_dssp CCCSSCTT
T ss_pred CcCCCCCC
Confidence 34444443
No 8
>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}
Probab=29.75 E-value=39 Score=17.99 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=19.7
Q ss_pred CCCcEeeeeeeEeeecCCeEEEEEeeEE-eeccCCcee
Q psy17213 25 EPGTSVTLEGIVWHETEGTSVTLEGIVW-HETEGKGIS 61 (69)
Q Consensus 25 EpGTsV~LEGIVW~Etegg~l~vvnVtW-R~teg~~~~ 61 (69)
.+|.+|.|.|. +.+..... .+.| |...|++..
T Consensus 13 ~~G~~VtL~C~--~~~~~~~~---~~~Wyrq~~g~~~~ 45 (114)
T d2ak4d1 13 VEKEDVTLDCV--YETRDTTY---YLFWYKQPPSGELV 45 (114)
T ss_dssp ETTCCEEECCE--EECSCSSC---EEEEEEECTTCCCE
T ss_pred eCCCCEEEEEE--EcCCCcCc---cEEEEEccccCcce
Confidence 47899999994 34433322 4578 666666544
No 9
>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}
Probab=28.20 E-value=16 Score=19.69 Aligned_cols=30 Identities=20% Similarity=0.621 Sum_probs=19.6
Q ss_pred CCCcEeeeeeeEeeecCCeEEEEEeeEE-eeccCCcee
Q psy17213 25 EPGTSVTLEGIVWHETEGTSVTLEGIVW-HETEGKGIS 61 (69)
Q Consensus 25 EpGTsV~LEGIVW~Etegg~l~vvnVtW-R~teg~~~~ 61 (69)
++|.+|.|+|-. .+ . . -++.| |.+.|++.-
T Consensus 6 ~eG~~vtL~C~~--~~--~-~--~~i~WYrQ~~g~~~~ 36 (96)
T d1ymmd1 6 QEGENATMNCSY--KT--S-I--NNLQWYRQNSGRGLV 36 (96)
T ss_dssp SSCCCCCBCCBC--SS--C-E--EEEEEECCCSSCCCC
T ss_pred CCCCCEEEEEEE--eC--C-c--ccEEEEEECCCCCcc
Confidence 468999999842 22 2 2 37888 666777654
No 10
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
Probab=27.31 E-value=7.2 Score=21.83 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=16.4
Q ss_pred eccCCCccccCCCCcEeee--eee
Q psy17213 14 TITEPECLGPCEPGTSVTL--EGI 35 (69)
Q Consensus 14 t~TEp~clGPCEpGTsV~L--EGI 35 (69)
.++.-.|+|.|..|=.|.+ +|+
T Consensus 47 ~v~~tgClG~C~~gP~v~i~P~~~ 70 (101)
T d1m2da_ 47 VITPTGCMNASMMGPVVVVYPDGV 70 (101)
T ss_dssp EEEEESCCSCGGGCSCEEEETTTE
T ss_pred EEEEccCCcccCCCceEEEcCCcc
Confidence 3455679999999988876 553
No 11
>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.64 E-value=44 Score=18.02 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=20.1
Q ss_pred cCCCCcEeeeeeeEeeecCCeEEEEEeeEEeec-cCCce
Q psy17213 23 PCEPGTSVTLEGIVWHETEGTSVTLEGIVWHET-EGKGI 60 (69)
Q Consensus 23 PCEpGTsV~LEGIVW~Etegg~l~vvnVtWR~t-eg~~~ 60 (69)
.-++|.+|.|+|-+-...... .+.|-.. .|++.
T Consensus 11 t~~~G~~vtL~C~~~~~~~~~-----~i~WyrQ~~g~~~ 44 (114)
T d1akjd_ 11 TWNLGETVELKCQVLLSNPTS-----GCSWLFQPRGAAA 44 (114)
T ss_dssp CCCTTCCEEEEEEECCSSCCS-----CEEEEEECSSTTC
T ss_pred eccCCCcEEEEEEeCCCcCCC-----CEEEEEECCCCCc
Confidence 357899999999765333221 4577554 44443
No 12
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=25.07 E-value=17 Score=21.20 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=14.4
Q ss_pred CCCccccCCCCcEeeee
Q psy17213 17 EPECLGPCEPGTSVTLE 33 (69)
Q Consensus 17 Ep~clGPCEpGTsV~LE 33 (69)
+---+|-..+|..||||
T Consensus 75 ~~Tnl~~~~~G~~VNLE 91 (110)
T d1kzla2 75 SKVIMAKKNVGDLVNVE 91 (110)
T ss_dssp TTSGGGGCCTTCEEEEE
T ss_pred hhcccccCCCCCEEEEe
Confidence 34568999999999998
No 13
>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}
Probab=24.91 E-value=40 Score=18.82 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=19.5
Q ss_pred CCCcEeeeeeeEeeecCCeEEEEEeeEE-eeccCCce
Q psy17213 25 EPGTSVTLEGIVWHETEGTSVTLEGIVW-HETEGKGI 60 (69)
Q Consensus 25 EpGTsV~LEGIVW~Etegg~l~vvnVtW-R~teg~~~ 60 (69)
.+|.+|.|+|-+=+.+-+. -.|.| |...|++.
T Consensus 14 ~~G~svtL~C~~~~~~~~~----~~i~WYrQ~pg~~~ 46 (120)
T d1ypzf1 14 PRDETAQISCKVFIESFRS----VTIHWYRQKPNQGL 46 (120)
T ss_dssp ETTSCEEEEEEECCGGGGG----CCEEEEEECTTTCC
T ss_pred cCCCcEEEEEEEecccccC----CcccEEEeCCcccc
Confidence 3699999999653322222 14667 66667765
No 14
>d2hrva_ b.47.1.4 (A:) 2A cysteine proteinase {Human rhinovirus 2 [TaxId: 12130]}
Probab=24.00 E-value=11 Score=24.35 Aligned_cols=8 Identities=75% Similarity=1.693 Sum_probs=7.0
Q ss_pred cccCCCCc
Q psy17213 21 LGPCEPGT 28 (69)
Q Consensus 21 lGPCEpGT 28 (69)
.||||||.
T Consensus 98 ~G~~epGD 105 (139)
T d2hrva_ 98 EGPCEPGD 105 (139)
T ss_dssp ECCCCTTC
T ss_pred ecCCCCCC
Confidence 59999997
No 15
>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}
Probab=22.93 E-value=33 Score=17.70 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=19.8
Q ss_pred CCCcEeeeeeeEeeecCCeEEEEEeeEEeeccCCce
Q psy17213 25 EPGTSVTLEGIVWHETEGTSVTLEGIVWHETEGKGI 60 (69)
Q Consensus 25 EpGTsV~LEGIVW~Etegg~l~vvnVtWR~teg~~~ 60 (69)
..|.+|.|.|-++...+. .+++|.+ .|+-+
T Consensus 15 ~eG~~v~L~C~~~~~~p~-----~~~~W~k-ng~~~ 44 (89)
T d1fnla2 15 KEEDPIHLRCHSWKNTAL-----HKVTYLQ-NGKDR 44 (89)
T ss_dssp ETTCCEEEEEEECTTCCC-----EEEEEEE-TTEEE
T ss_pred ccCCeEEEEEEecCCCCC-----cEEEEEE-ccccc
Confidence 358999999988743332 3788974 44433
No 16
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]}
Probab=20.29 E-value=68 Score=17.55 Aligned_cols=40 Identities=5% Similarity=0.055 Sum_probs=25.1
Q ss_pred CcEeeeeeeEeeecCCeEEEE-E--eeEEeeccCCceeeEEEE
Q psy17213 27 GTSVTLEGIVWHETEGTSVTL-E--GIVWHETEGKGISQSLFI 66 (69)
Q Consensus 27 GTsV~LEGIVW~Etegg~l~v-v--nVtWR~teg~~~~~~~~~ 66 (69)
...+.++.+..+.+.++.+++ | .++..+..-...+|+.++
T Consensus 57 ~~~~~i~~~D~Qp~~~~~ili~V~G~~~~~~~~~~~F~q~F~L 99 (117)
T d1zo2a1 57 RVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQVFNL 99 (117)
T ss_dssp CEEEEEEEEEEEECTBSSEEEEEEEEEEETTCCCEEEEEEEEE
T ss_pred cceEEEeeEEEEEcCCCCEEEEEEEEEEeCCCCcceeEEEEEE
Confidence 567889999999876664443 2 233333334567887554
Done!