RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17213
         (69 letters)



>gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase.  In a multiple
          sequence alignment of representative asparaginyl-tRNA
          synthetases (asnS), archaeal/eukaryotic type
          aspartyl-tRNA synthetases (aspS_arch), and bacterial
          type aspartyl-tRNA synthetases (aspS_bact), there is a
          striking similarity between asnS and aspS_arch in gap
          pattern and in sequence, and a striking divergence of
          aspS_bact. Consequently, a separate model was built for
          each of the three groups. This model, asnS, represents
          asparaginyl-tRNA synthetases from the three domains of
          life. Some species lack this enzyme and charge
          tRNA(asn) by misacylation with Asp, followed by
          transamidation of Asp to Asn [Protein synthesis, tRNA
          aminoacylation].
          Length = 453

 Score = 25.0 bits (55), Expect = 2.9
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 40 TEGTSVTLEGIVWHETEGKG 59
          T G+SV++ G V  E+ GKG
Sbjct: 68 TTGSSVSVTGKVV-ESPGKG 86


>gnl|CDD|232870 TIGR00198, cat_per_HPI, catalase/peroxidase HPI.  As catalase, this
           enzyme catalyzes the dismutation of two molecules of
           hydrogen peroxide to dioxygen and two molecules of
           water. As a peroxidase, it uses hydrogen peroxide to
           oxidize donor compounds and produce water. KatG from E.
           coli is a homotetramer with two non-covalently
           associated iron protoheme IX groups per tetramer, but
           the ortholog from Synechococcus sp. is a homodimer with
           one protoheme. Important sites (numbered according to E.
           coli KatG) include heme ligands His-106 and His-267 and
           active site Trp-318. Note that the translation
           PID:g296476 from accession X71420 from Rhodobacter
           capsulatus B10 contains extensive frameshift differences
           from the rest of the orthologous family [Cellular
           processes, Detoxification].
          Length = 716

 Score = 24.9 bits (54), Expect = 3.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 39  ETEGTSVTLEGIVWHETEGKGISQSLF 65
           + EG  +  +G+ WH   GKG+ +   
Sbjct: 268 DPEGAPIEEQGLGWHNQYGKGVGRDTM 294


>gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase.
          Length = 572

 Score = 25.0 bits (54), Expect = 4.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 42  GTSVTLEGIVWHETEGKGISQSL 64
           GT VT++G++    EGKG  Q +
Sbjct: 102 GTCVTVDGVLKVPPEGKGTKQKI 124


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.313    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0749    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,135,682
Number of extensions: 209185
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 6
Length of query: 69
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 30
Effective length of database: 9,207,796
Effective search space: 276233880
Effective search space used: 276233880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)