RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17213
         (69 letters)



>2q78_A Uncharacterized protein; structural genomics, joint center for
           structural genomics, J protein structure initiative,
           PSI-2, hydrolase; HET: MSE MLC; 2.20A {Thermotoga
           maritima MSB8} SCOP: d.38.1.7
          Length = 153

 Score = 25.2 bits (55), Expect = 1.5
 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 10  TSVGTITEPECLGPCEPGTSVTLEGIVWHETEGTSVTLEGIVWHETE--GKGI 60
           T+V   T    +     GT V +   V     G  V   GIV    E   +  
Sbjct: 74  TAVVVETLARHVKAVPTGTRVAVGVRV-VGVVGNRVKFRGIVMSGDEKILEAE 125


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.6 bits (53), Expect = 3.0
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 6/30 (20%)

Query: 26  PGTSVTLEGIVWHETEGTSV------TLEG 49
           PG +  L  +     +GT V      TL+ 
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRVIVAGTLDI 535


>2d6m_A Galectin-9, lectin, galactose binding, soluble 9; beta sandwich,
          carbohydrate binding protein, sugar binding protein;
          HET: LBT; 1.60A {Mus musculus} PDB: 2d6l_X 2d6k_A*
          2d6n_A* 2d6p_A* 2d6o_X*
          Length = 159

 Score = 24.2 bits (52), Expect = 3.8
 Identities = 7/26 (26%), Positives = 10/26 (38%)

Query: 22 GPCEPGTSVTLEGIVWHETEGTSVTL 47
          G  + G  VTL+G      +   V  
Sbjct: 25 GGLQEGLQVTLQGTTKSFAQRFVVNF 50


>3b9c_A HSPC159; beta sandwich, unknown function; 1.90A {Homo sapiens}
          PDB: 2jj6_A
          Length = 144

 Score = 24.2 bits (52), Expect = 4.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 22 GPCEPGTSVTLEGIVWHETEGTSVTL 47
          G   PG  V + GIV    E  +++L
Sbjct: 18 GGMRPGKKVLVMGIVDLNPESFAISL 43


>1hlc_A Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} SCOP: b.29.1.3
          Length = 129

 Score = 23.7 bits (51), Expect = 4.5
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 22 GPCEPGTSVTLEGIVWHETEGTSVTL 47
             +PG+++ + G +   T+G  + L
Sbjct: 7  MDMKPGSTLKITGSIADGTDGFVINL 32


>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
           structural genomics, JCS protein structure initiative,
           PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
           PDB: 2hae_A*
          Length = 388

 Score = 24.0 bits (53), Expect = 4.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 1   METADVCIGTSVGTITEPE 19
           +E AD  IG S G I +PE
Sbjct: 261 LEGADFFIGVSRGNILKPE 279


>3kuv_A Fluoroacetyl coenzyme A thioesterase; fluoroacetyl-COA thioesterase
           FLK, hot DOG folding, thioeste hydrolase; 1.50A
           {Streptomyces cattleya} PDB: 3kuw_A 3kvu_A* 3p2q_A
           3p2r_A 3p2s_A 3kv7_A 3kv8_A 3kvz_A* 3kw1_A* 3kx7_A
           3kx8_A 3kvi_A 3p3i_A 3p3f_A
          Length = 139

 Score = 23.7 bits (51), Expect = 6.2
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 10  TSVGTITEPECLGPCEPGTSVTLEGIVWHETEGTSVTLEGIVWHETE 56
            S+GT           PG +VT+   +    EG  ++         +
Sbjct: 66  GSLGTAICVTHTAATPPGLTVTVTAEL-RSVEGRRLSWRVSAHDGVD 111


>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens}
          PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A*
          1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A*
          3aya_A* 3ayd_A* 3aye_A*
          Length = 138

 Score = 23.3 bits (50), Expect = 7.1
 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 3/35 (8%)

Query: 22 GPCEPGTSVTLEGIVWHETEGTSVTL---EGIVWH 53
          G   P   +T+ G V       ++       + +H
Sbjct: 12 GGVVPRMLITILGTVKPNANRIALDFQRGNDVAFH 46


>1qmj_A Beta-galactoside-binding lectin; galectin, sugar binding protein;
          2.15A {Gallus gallus} SCOP: b.29.1.3
          Length = 132

 Score = 23.4 bits (50), Expect = 7.4
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 13 GTITEPECLGPCEPGTSVTLEGIVWHETEGTSVTL----EGIVWH 53
          G +         +PG  V ++G +  + +G SV +      ++ H
Sbjct: 2  GLVVTQ---LDVQPGECVKVKGKILSDAKGFSVNVGKDSSTLMLH 43


>3ap9_A Galectin-8; beta-sandwich, carbohydrate/sugar binding, lacto-N
          fucopentaose III, sugar binding protein; HET: GAL FUC
          NAG BGC; 1.33A {Homo sapiens} PDB: 3ap4_A 3ap5_A*
          3ap6_A* 3ap7_A* 3apb_A 2yv8_A 2yxs_A*
          Length = 154

 Score = 23.0 bits (49), Expect = 8.5
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 22 GPCEPGTSVTLEGIVWHETEGTSVTL 47
             +PGT + + G V  + +   V L
Sbjct: 25 DQLDPGTLIVIRGHVPSDADRFQVDL 50


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0591    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 968,750
Number of extensions: 41619
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 13
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)