RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17213
         (69 letters)



>d2nn8a1 b.29.1.3 (A:114-250) Galectin-3 CRD {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 137

 Score = 24.1 bits (52), Expect = 1.5
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 22 GPCEPGTSVTLEGIVWHETEGTSVTL 47
          G   P   +T+ G V       ++  
Sbjct: 11 GGVVPRMLITILGTVKPNANRIALDF 36


>d1is3a_ b.29.1.3 (A:) Congerin II {Conger eel (Conger myriaster)
          [TaxId: 7943]}
          Length = 134

 Score = 23.3 bits (50), Expect = 2.7
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 23 PCEPGTSVTLEGIVWHETEGTSVTL 47
          P + G  +T+ G+V       S+ +
Sbjct: 9  PFKLGMYLTVGGVVNSNATRFSINV 33


>d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 129

 Score = 22.9 bits (49), Expect = 3.3
 Identities = 6/23 (26%), Positives = 14/23 (60%)

Query: 25 EPGTSVTLEGIVWHETEGTSVTL 47
          +PG+++ + G +   T+G  + L
Sbjct: 10 KPGSTLKITGSIADGTDGFVINL 32


>d2gala_ b.29.1.3 (A:) Galectin-7 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 133

 Score = 22.9 bits (49), Expect = 4.1
 Identities = 7/26 (26%), Positives = 10/26 (38%)

Query: 22 GPCEPGTSVTLEGIVWHETEGTSVTL 47
              PGT + + G+V        V L
Sbjct: 9  EGIRPGTVLRIRGLVPPNASRFHVNL 34


>d1c1la_ b.29.1.3 (A:) Congerin I {Conger eel (Conger myriaster)
          [TaxId: 7943]}
          Length = 135

 Score = 22.9 bits (49), Expect = 4.2
 Identities = 5/25 (20%), Positives = 11/25 (44%)

Query: 23 PCEPGTSVTLEGIVWHETEGTSVTL 47
              G  +T+ G + +  +  SV +
Sbjct: 9  DFTVGKFLTVGGFINNSPQRFSVNV 33


>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum
           [TaxId: 1050]}
          Length = 280

 Score = 22.4 bits (48), Expect = 5.7
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 25  EPGTSVTLEGIVWHETEGTSVTLEGI 50
           EP  +   E   + +  G S+    I
Sbjct: 212 EPVKTSEHENTFFRDIVGYSIGALAI 237


>d1qmja_ b.29.1.3 (A:) Galectin-1 {Chicken (Gallus gallus) [TaxId:
          9031]}
          Length = 132

 Score = 22.1 bits (47), Expect = 6.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 25 EPGTSVTLEGIVWHETEGTSVTL 47
          +PG  V ++G +  + +G SV +
Sbjct: 11 QPGECVKVKGKILSDAKGFSVNV 33


>d1a78a_ b.29.1.3 (A:) Galectin-1 {Toad (Bufo arenarum) [TaxId:
          38577]}
          Length = 134

 Score = 22.1 bits (47), Expect = 7.0
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 25 EPGTSVTLEGIVWHETEGTSVTL 47
          +PG  V ++G +  + +G +V L
Sbjct: 13 KPGHCVEIKGSIPPDCKGFAVNL 35


>d1w6na_ b.29.1.3 (A:) Galectin-1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 134

 Score = 22.2 bits (47), Expect = 7.2
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 25 EPGTSVTLEGIVWHETEGTSVTL 47
          +PG  + + G V  + +   + L
Sbjct: 12 KPGECLRVRGEVAPDAKSFVLNL 34


>d2giya1 b.1.1.1 (A:218-394) Alphaherpesvirus glycoprotein E
          {Human herpesvirus 1 [TaxId: 10298]}
          Length = 177

 Score = 22.1 bits (47), Expect = 9.0
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 16 TEPECLGPCEPGTSVT 31
            PECL P +   + +
Sbjct: 68 QLPECLSPADAPCAAS 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 239,372
Number of extensions: 7948
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 10
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)