BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17215
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure
Length = 375
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 10 GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI-SR 68
GK F++TY+ L F + +P+S AIYK W P Q+YS C+ Y + G I +
Sbjct: 109 GKAFDITYVRLKF--HTSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRTG 166
Query: 69 GNEQEALCTD 78
G+EQ+ALCTD
Sbjct: 167 GDEQQALCTD 176
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 98 VKVNSVCGLESPERYCDTSG------ACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSE 151
V + CG PE YC +G +CH+CDAG + A +LTD NN ++ T W+S
Sbjct: 32 VVATNTCGT-PPEEYCVQTGVTGVTKSCHLCDAGQQHLQHGAAFLTDYNNQADTTWWQS- 89
Query: 152 AQTSVNSLSASPDNVTLTLSLEK 174
QT + + P+++ LTL L K
Sbjct: 90 -QTMLAGVQ-YPNSINLTLHLGK 110
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 8 SYGKKFELT-YISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV- 65
S+ K ELT I ++F +S +PD + + KS D+G++WQP Q+Y++ C + V
Sbjct: 137 SWSKTIELTDNIVITF--ESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVK 194
Query: 66 -ISRGNEQEALCTDRH 80
+S+ E +CT+ +
Sbjct: 195 DLSQHTVLEIICTEEY 210
>pdb|3ZYG|A Chain A, Netring2 Lam And Egf1 Domains
pdb|3ZYG|B Chain B, Netring2 Lam And Egf1 Domains
pdb|3ZYI|B Chain B, Netring2 In Complex With Ngl2
Length = 353
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 8 SYGKKFELTY-ISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV- 65
S+ K ELT + ++F + +P + + KS D G++WQP QFY+ C + +G +A
Sbjct: 126 SWNKTVELTDDVVMTF--EYGRPTVMVLEKSLDNGRTWQPYQFYAEDCMEAFGMSARRAR 183
Query: 66 -ISRGNEQEALCTDRHKKQGKGK 87
+S + LCT+ + + K
Sbjct: 184 DMSSSSAHRVLCTEEYSRWAGSK 206
>pdb|3TBD|A Chain A, Crystal Structure Of Domain Vi And Le1 Of Human Netrin-G2
Length = 338
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 8 SYGKKFELTY-ISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV- 65
S+ K ELT + ++F + +P + + KS D G++WQP QFY+ C + +G +A
Sbjct: 109 SWNKTVELTDDVVMTF--EYGRPTVMVLEKSLDNGRTWQPYQFYAEDCMEAFGMSARRAR 166
Query: 66 -ISRGNEQEALCTDRHKKQGKGK 87
+S + LCT+ + + K
Sbjct: 167 DMSSSSAHRVLCTEEYSRWAGSK 189
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
Length = 403
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 10 GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISR- 68
G+ F + Y+ + F S +PD + +S DFG ++QP QF++S + R + R
Sbjct: 115 GQVFHVAYVLIKFA-NSPRPDLWVLERSTDFGHTYQPWQFFASSKRDCLERFGPRTLERI 173
Query: 69 GNEQEALCTDRHKK 82
+ + +CT + +
Sbjct: 174 TQDDDVICTTEYSR 187
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
Length = 525
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 12 KFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNE 71
+F T++ ++F K+ +P ++ I +S DFGK+W ++++ C+ + +TG + + +
Sbjct: 113 EFHFTHLIMTF--KTFRPAAMLIERSSDFGKAWGVYRYFAYDCESSFPGISTGPMKKVD- 169
Query: 72 QEALCTDRH 80
+ +C R+
Sbjct: 170 -DIICDSRY 177
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 96 QEVKVNSVCGLESPERYCDTSGA-----CHVCDAGSP 127
Q++ V S CGL PE YC S C +CD+ P
Sbjct: 31 QKLSVTSTCGLHKPEPYCIVSHLQEDKKCFICDSRDP 67
>pdb|2RKC|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin
Length = 462
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 32 LAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGKGKMSRR 91
L ++KS +SW PL +LY + GVI+ + A+ T R + R
Sbjct: 169 LGVWKSPTDMQSWVPLSTDDPVIDRLYLSSHRGVIADNQAKWAVPTTRTDDK-----LRM 223
Query: 92 RTNCQEV---KVNSVCGLESPE 110
T Q+ K+ ++C E+PE
Sbjct: 224 ETCFQQACKGKIQALC--ENPE 243
>pdb|3ALX|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
pdb|3ALX|B Chain B, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
pdb|3ALX|C Chain C, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
pdb|3ALX|D Chain D, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
Length = 559
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 32 LAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDR 79
L ++KS +SW PL +LY + GVI+ + A+ T R
Sbjct: 144 LGVWKSPTDMQSWVPLSTDDPVIDRLYLSSHRGVIADNQAKWAVPTTR 191
>pdb|2ZB5|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin
(Complex-Sugar- Type)
pdb|2ZB6|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin
(Oligo-Sugar Type)
pdb|3ALZ|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam (Form I)
Length = 481
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 32 LAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGKGKMSRR 91
L ++KS +SW PL +LY + GVI+ + A+ T R + R
Sbjct: 179 LGVWKSPTDMQSWVPLSTDDPVIDRLYLSSHRGVIADNQAKWAVPTTRTDDK-----LRM 233
Query: 92 RTNCQEV---KVNSVCGLESPE 110
T Q+ K+ ++C E+PE
Sbjct: 234 ETCFQQACKGKIQALC--ENPE 253
>pdb|3ALW|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam (Form I,
Mv-H-Slam(N102hR108Y) FUSION)
Length = 559
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 32 LAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDR 79
L ++KS +SW PL +LY + GVI+ + A+ T R
Sbjct: 144 LGVWKSPTDMQSWVPLSTDDPVIDRLYLSSHRGVIADNQAKWAVPTTR 191
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 6 GQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV 65
GQSY T S++ + PD +Y D+ K W+ YS + G
Sbjct: 46 GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWR----YSYTATYYIYDLSNGE 101
Query: 66 ISRGNE 71
RGNE
Sbjct: 102 FVRGNE 107
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 41 GKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGKGKMSRRRTNCQEVKV 100
G W+ L+ +S + +G V R E EA C ++ KG + Q +
Sbjct: 99 GNRWKVLRRFSVTTMRDFGMGKRSVEERIQE-EAQCLIEELRKSKGALMDPTFLFQSITA 157
Query: 101 NSVCGLESPERY 112
N +C + +R+
Sbjct: 158 NIICSIVFGKRF 169
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 19 SLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISR 68
S+S P + + D+L + K Q++G+ W + K GRT + +R
Sbjct: 59 SISHTPWTAEEDALLVQKIQEYGRQWAII------AKFFPGRTDIHIKNR 102
>pdb|2RIO|A Chain A, Structure Of The Dual Enzyme Ire1 Reveals The Basis For
Catalysis And Regulation Of Non-conventional Splicing
pdb|2RIO|B Chain B, Structure Of The Dual Enzyme Ire1 Reveals The Basis For
Catalysis And Regulation Of Non-conventional Splicing
Length = 434
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 105 GLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRS 150
G E+ G C D+G R T+LNNPS + WR+
Sbjct: 161 GAENLRILISDFGLCKKLDSGQSSFR------TNLNNPSGTSGWRA 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,251,524
Number of Sequences: 62578
Number of extensions: 205361
Number of successful extensions: 398
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 20
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)