Query psy17215
Match_columns 174
No_of_seqs 213 out of 666
Neff 6.0
Searched_HMMs 46136
Date Sat Aug 17 00:48:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00136 LamNT Laminin N-ter 99.9 2.1E-28 4.5E-33 205.0 7.3 89 71-174 2-96 (238)
2 smart00136 LamNT Laminin N-ter 99.9 1.7E-27 3.7E-32 199.5 10.3 80 2-84 87-166 (238)
3 PF00055 Laminin_N: Laminin N- 99.9 1.4E-27 3.1E-32 199.9 8.8 81 2-85 85-166 (237)
4 KOG3512|consensus 99.9 4.4E-26 9.5E-31 203.7 9.2 82 1-84 124-206 (592)
5 PF00055 Laminin_N: Laminin N- 99.9 8.5E-27 1.8E-31 195.2 4.4 86 76-174 1-94 (237)
6 KOG3512|consensus 99.8 9.7E-22 2.1E-26 176.0 6.1 92 69-174 40-134 (592)
7 KOG0994|consensus 99.8 2.9E-21 6.3E-26 185.4 7.2 84 2-89 120-203 (1758)
8 KOG0994|consensus 99.8 5.5E-19 1.2E-23 170.0 5.1 89 69-173 29-128 (1758)
9 KOG1836|consensus 99.3 1.3E-12 2.9E-17 132.3 4.9 95 3-106 123-218 (1705)
10 KOG1836|consensus 98.9 5.5E-10 1.2E-14 113.6 4.0 87 71-173 37-130 (1705)
11 PF00754 F5_F8_type_C: F5/8 ty 95.9 0.015 3.3E-07 41.8 4.5 44 3-49 38-85 (129)
12 PF02012 BNR: BNR/Asp-box repe 95.5 0.012 2.6E-07 27.7 1.7 12 35-46 1-12 (12)
13 cd00057 FA58C Substituted upda 95.0 0.059 1.3E-06 40.1 5.3 44 4-48 47-93 (143)
14 cd08665 APC10-CUL7 APC10-like 81.5 1.4 3.1E-05 34.1 2.7 32 129-170 12-43 (131)
15 cd08366 APC10 APC10 subunit of 81.1 1.1 2.4E-05 34.8 2.0 31 130-171 17-47 (139)
16 cd08365 APC10-like1 APC10-like 80.4 1.3 2.9E-05 34.2 2.2 19 131-152 15-33 (131)
17 cd08666 APC10-HECTD3 APC10-lik 78.0 1.8 3.9E-05 33.7 2.3 30 131-170 19-48 (134)
18 cd08667 APC10-ZZEF1 APC10/DOC1 77.4 1.7 3.7E-05 33.6 2.0 30 131-170 14-43 (131)
19 KOG3437|consensus 75.3 1.9 4.1E-05 35.1 1.8 31 130-171 36-66 (184)
20 smart00231 FA58C Coagulation f 70.5 9.5 0.00021 28.5 4.6 43 4-48 46-89 (139)
21 cd08664 APC10-HERC2 APC10-like 68.0 4.5 9.7E-05 32.2 2.4 19 130-152 37-55 (152)
22 cd08159 APC10-like APC10-like 67.1 4.6 0.0001 31.1 2.2 19 132-153 15-33 (129)
23 PF03256 APC10: Anaphase-promo 62.8 4.9 0.00011 32.9 1.8 30 130-170 44-74 (193)
24 COG5156 DOC1 Anaphase-promotin 54.0 5.8 0.00013 32.0 0.8 24 128-154 38-61 (189)
25 PF06219 DUF1005: Protein of u 53.6 8.8 0.00019 35.3 1.9 25 27-52 280-304 (460)
26 cd02847 Chitobiase_C_term Chit 51.5 11 0.00024 26.5 1.8 23 26-49 28-50 (78)
27 cd00057 FA58C Substituted upda 48.6 18 0.0004 26.4 2.7 32 130-174 23-54 (143)
28 KOG4276|consensus 42.7 44 0.00096 25.0 3.9 50 5-55 10-61 (113)
29 PF13088 BNR_2: BNR repeat-lik 40.2 1E+02 0.0022 25.1 6.2 42 8-51 56-98 (275)
30 PF13810 DUF4185: Domain of un 37.9 56 0.0012 28.6 4.5 40 7-48 101-145 (316)
31 PF13088 BNR_2: BNR repeat-lik 36.8 59 0.0013 26.4 4.3 18 31-48 183-200 (275)
32 PF07738 Sad1_UNC: Sad1 / UNC- 29.2 1.8E+02 0.0039 21.5 5.5 48 3-50 32-85 (135)
33 PF07866 DUF1653: Protein of u 26.1 1.1E+02 0.0024 20.7 3.4 31 10-44 9-40 (64)
34 KOG4350|consensus 24.3 22 0.00049 33.0 -0.3 41 4-45 328-368 (620)
35 PF13859 BNR_3: BNR repeat-lik 23.9 57 0.0012 28.5 2.1 26 29-55 148-174 (310)
36 PF14870 PSII_BNR: Photosynthe 20.7 68 0.0015 28.0 1.9 16 33-48 125-140 (302)
37 PF14870 PSII_BNR: Photosynthe 20.4 76 0.0016 27.7 2.2 16 33-48 38-53 (302)
38 cd00260 Sialidase Sialidases o 20.1 71 0.0015 27.2 2.0 25 30-54 46-70 (351)
No 1
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=99.95 E-value=2.1e-28 Score=205.03 Aligned_cols=89 Identities=45% Similarity=0.752 Sum_probs=81.5
Q ss_pred CccccccccccccCCCcccccccccceeeEeccccCCCCceeeecc------CcccccCCCCCCCCCCCccccccCCCCC
Q psy17215 71 EQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTS------GACHVCDAGSPRGRFPAEYLTDLNNPSN 144 (174)
Q Consensus 71 ~~~~~C~p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~------~~C~~Cd~~~p~~~Hp~~~ltD~~~~~~ 144 (174)
.....|+|.+.|+|+|+ +|.|+||||+.+||+||+++ .+|++||+++|.++||+++|||.+++++
T Consensus 2 ~~~~~C~P~~~nla~g~---------~v~assTCG~~~pe~yC~~~~~~~~~~~C~~CDa~~p~~~Hp~~~l~D~~~~~~ 72 (238)
T smart00136 2 GRPRSCYPPFVNLAFGR---------EVTATSTCGEPGPERYCKLVGHTEQGKKCDYCDARNPRRSHPAENLTDGNNPNN 72 (238)
T ss_pred CCCccccCchhhhhcCC---------eeeEecCCCCCCCcceeEeccccCcCCcCCCCCCCCccccCCHHHhhccCCCCC
Confidence 35678999999999999 99999999999999999983 3799999999999999999999999999
Q ss_pred ceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215 145 VTCWRSEAQTSVNSLSASPDNVTLTLSLEK 174 (174)
Q Consensus 145 ~TwWQS~~~~~~~~~~~~p~~VtltLdLgk 174 (174)
.|||||+++. ..+++|||||||||
T Consensus 73 ~TwWQS~~~~------~~~~~VtitLdL~k 96 (238)
T smart00136 73 PTWWQSEPLS------NGPQNVNLTLDLGK 96 (238)
T ss_pred CceecCCCcC------CCCccEEEEEecCC
Confidence 9999999986 33478999999997
No 2
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=99.95 E-value=1.7e-27 Score=199.53 Aligned_cols=80 Identities=40% Similarity=0.835 Sum_probs=76.2
Q ss_pred ceeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCCCCCCCcccCCCcccccccccc
Q psy17215 2 HFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHK 81 (174)
Q Consensus 2 ~v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~~~~~~~~~~~~~~~~C~p~~s 81 (174)
+|||||||+|+|||+||+|+|+ +|||++|+|||| |+|++|+||||||.+|.+.|||++++.+...++++++|++.|+
T Consensus 87 ~VtitLdL~k~fevtyi~l~F~--s~RPa~~i~erS-d~G~tW~p~qyfa~dC~~~f~~~~~~~~~~~n~~~v~Ct~~ys 163 (238)
T smart00136 87 NVNLTLDLGKEFHVTYVILKFC--SPRPSLWILERS-DFGKTWQPWQYFSSDCRRTFGRPPRGPITKGNEDEVICTSEYS 163 (238)
T ss_pred cEEEEEecCCEEEEEEEEEEec--CCCCceEEEeec-CCCCCCcEeeeeecchhhhcCCCCCCCCCCCCCCccEECCCCC
Confidence 4999999999999999999999 999999999999 9999999999999999999999999887767899999999999
Q ss_pred ccC
Q psy17215 82 KQG 84 (174)
Q Consensus 82 ~la 84 (174)
++.
T Consensus 164 ~~~ 166 (238)
T smart00136 164 DIV 166 (238)
T ss_pred CCc
Confidence 873
No 3
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=99.94 E-value=1.4e-27 Score=199.89 Aligned_cols=81 Identities=36% Similarity=0.774 Sum_probs=67.4
Q ss_pred ceeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCCCCCCCccc-CCCccccccccc
Q psy17215 2 HFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISR-GNEQEALCTDRH 80 (174)
Q Consensus 2 ~v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~~~~~~~~~-~~~~~~~C~p~~ 80 (174)
+|||||||+++|||+||+|+|+ ||||++|+||||.|+| +|+||||||.+|.+.|||++.+.+.. .+.++++|+..|
T Consensus 85 ~VtitLdL~~~f~v~~v~l~F~--spRP~~miierS~D~g-tW~p~qYfA~~C~~~f~~~~~~~~~~~~~~~~v~Ct~~y 161 (237)
T PF00055_consen 85 NVTITLDLGKEFEVTYVILQFC--SPRPAAMIIERSSDFG-TWQPWQYFASDCSRTFGMPPNGPPPKFANPDEVICTSRY 161 (237)
T ss_dssp -EEEEEEEEEEEEEEEEEEEES--S---SEEEEEEESSTT-SEEEEEEEESSHHHHCS--BTTGGG-STSTT---EESTT
T ss_pred ceEEEEcccceEEEEEEEEEEc--CCCCCeEEEEEccCCC-ceeEeHHhhcCChhhcCCcccccccccCCCCcCeecCcC
Confidence 6999999999999999999999 9999999999999999 99999999999999999999987653 789999999999
Q ss_pred cccCC
Q psy17215 81 KKQGK 85 (174)
Q Consensus 81 s~la~ 85 (174)
+++..
T Consensus 162 S~~~P 166 (237)
T PF00055_consen 162 SDIEP 166 (237)
T ss_dssp TTSSS
T ss_pred CCCcC
Confidence 99843
No 4
>KOG3512|consensus
Probab=99.93 E-value=4.4e-26 Score=203.73 Aligned_cols=82 Identities=55% Similarity=0.958 Sum_probs=77.7
Q ss_pred CceeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCC-CCCCCcccCCCcccccccc
Q psy17215 1 LHFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGR-TATGVISRGNEQEALCTDR 79 (174)
Q Consensus 1 ~~v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~-~~~~~~~~~~~~~~~C~p~ 79 (174)
|+|||||+|||+||||||+|+|+ |+||++|+||||.|+|+||+||||||.+|.+.||| +....++.+++++++|++.
T Consensus 124 lnVtlTLSlgKkfELT~Vsl~Fc--S~rPdsmaL~KS~D~GrTWqPfQFYss~C~~~fgr~~~~a~isk~n~~Ea~Ct~s 201 (592)
T KOG3512|consen 124 LNVTLTLSLGKKFELTYVSLTFC--SGRPDSMALEKSLDYGRTWQPFQFYSSDCRKAFGRSPRRADISKSNEQEALCTES 201 (592)
T ss_pred ceEEEEEecCcEEEEEEEEEEEe--cCCCceeeeeeccccCCcccccchhHHHHHHHhCCCCcccccccCCccceeeccc
Confidence 68999999999999999999999 99999999999999999999999999999999999 5555677799999999999
Q ss_pred ccccC
Q psy17215 80 HKKQG 84 (174)
Q Consensus 80 ~s~la 84 (174)
|+..+
T Consensus 202 ~~~~~ 206 (592)
T KOG3512|consen 202 YSDGA 206 (592)
T ss_pred cccCC
Confidence 99886
No 5
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=99.93 E-value=8.5e-27 Score=195.18 Aligned_cols=86 Identities=44% Similarity=0.796 Sum_probs=56.9
Q ss_pred ccccccccCCCcccccccccceeeEeccccCCCCceeeeccC------cccccCCCCCC--CCCCCccccccCCCCCcee
Q psy17215 76 CTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSG------ACHVCDAGSPR--GRFPAEYLTDLNNPSNVTC 147 (174)
Q Consensus 76 C~p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~------~C~~Cd~~~p~--~~Hp~~~ltD~~~~~~~Tw 147 (174)
|+|++.|+|+|| .|.|+||||+++||+||++.+ +|++||+++|. ++||+++|||.+++++.||
T Consensus 1 C~P~~~nla~gr---------~v~assTCG~~~pe~yC~~~~~~~~~~~C~~Cda~~~~~~~~Hp~~~~~D~~~~~~~Tw 71 (237)
T PF00055_consen 1 CYPPFGNLAFGR---------EVTASSTCGEPGPERYCRLSGSQGRQRQCFICDASDPDPRRSHPPSYLTDSHNPNNSTW 71 (237)
T ss_dssp -----EETTTT----------EEECCCBS-SS--EEE--SSSTTT---E-EEE-TTSTSTTT---GGGGCSSSCTTB---
T ss_pred CCCCcchhhcCC---------EeEEEcCCCCCCCccceeccCccccCcccccCCCcccccccccChhhcccccccccCce
Confidence 899999999999 999999999999999999864 59999999876 9999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215 148 WRSEAQTSVNSLSASPDNVTLTLSLEK 174 (174)
Q Consensus 148 WQS~~~~~~~~~~~~p~~VtltLdLgk 174 (174)
|||+++. .|.++ ++|||||||||
T Consensus 72 WQS~~~~---~g~~~-~~VtitLdL~~ 94 (237)
T PF00055_consen 72 WQSETLQ---NGVQY-ENVTITLDLGK 94 (237)
T ss_dssp EEB--ST---TTTST-T-EEEEEEEEE
T ss_pred ecCCccC---CCCcC-cceEEEEcccc
Confidence 9999875 34555 59999999986
No 6
>KOG3512|consensus
Probab=99.85 E-value=9.7e-22 Score=176.00 Aligned_cols=92 Identities=42% Similarity=0.750 Sum_probs=85.6
Q ss_pred CCCccccccccccccCCCcccccccccceeeEeccccCCCCceeeeccC--ccc-ccCCCCCCCCCCCccccccCCCCCc
Q psy17215 69 GNEQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSG--ACH-VCDAGSPRGRFPAEYLTDLNNPSNV 145 (174)
Q Consensus 69 ~~~~~~~C~p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~--~C~-~Cd~~~p~~~Hp~~~ltD~~~~~~~ 145 (174)
.+.....|.|++.|+++|+ +|.|++||| ++||+||.+.. .|. .||+++|.++||++.|||+++++|.
T Consensus 40 e~g~p~~C~P~~vnaa~g~---------~V~as~TCG-drPe~~c~~~~~~~~~~eCdAs~p~~AHpPalltD~n~~~n~ 109 (592)
T KOG3512|consen 40 ETGEPRACQPEFVNAAFGK---------KVPASSTCG-DRPETFCSVENPYLCSNECDASNPDLAHPPALLTDLNGPGNA 109 (592)
T ss_pred CCCCeeecChhhhhhhhCC---------ccCCccccC-CCccceeeecCCCcccccccCCCccccCChHHhcCCCCCCCc
Confidence 5678899999999999999 999999999 89999999864 566 8999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215 146 TCWRSEAQTSVNSLSASPDNVTLTLSLEK 174 (174)
Q Consensus 146 TwWQS~~~~~~~~~~~~p~~VtltLdLgk 174 (174)
|+|||+++. .++.|.||||||+|||
T Consensus 110 TcWqS~tw~----~~~~PlnVtlTLSlgK 134 (592)
T KOG3512|consen 110 TCWQSETWS----RYPSPLNVTLTLSLGK 134 (592)
T ss_pred ceeeccccC----CCCCCceEEEEEecCc
Confidence 999999885 6789999999999998
No 7
>KOG0994|consensus
Probab=99.84 E-value=2.9e-21 Score=185.41 Aligned_cols=84 Identities=20% Similarity=0.469 Sum_probs=78.1
Q ss_pred ceeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCCCCCCCcccCCCcccccccccc
Q psy17215 2 HFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHK 81 (174)
Q Consensus 2 ~v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~~~~~~~~~~~~~~~~C~p~~s 81 (174)
+|+|+|||+.+|++|++||.|+ +|||++|+||||.|||+||.+|+|||.||..+|+..+++++ ...++++|+++||
T Consensus 120 ~vtIQLDLEAEFhFTHLImtFk--tfRPAAMliERS~DFGkTW~vYrYFAyDC~asFPGv~~~~~--kk~~DviCtSrYS 195 (1758)
T KOG0994|consen 120 NVTIQLDLEAEFHFTHLIMTFK--TFRPAAMLIERSSDFGKTWHVYRYFAYDCSATFPGVPTGPP--KKWDDVICTSRYS 195 (1758)
T ss_pred cceEEeehhhheeeeeeeEeec--cCCcceeeeeecccccccceeeeeeecccccCCCCCCCCCc--ccccceeeecccC
Confidence 5899999999999999999999 99999999999999999999999999999999988888876 6689999999999
Q ss_pred ccCCCccc
Q psy17215 82 KQGKGKMS 89 (174)
Q Consensus 82 ~la~g~~~ 89 (174)
++....++
T Consensus 196 ~~~PstgG 203 (1758)
T KOG0994|consen 196 DPEPSTGG 203 (1758)
T ss_pred CCCCCCCC
Confidence 98766543
No 8
>KOG0994|consensus
Probab=99.75 E-value=5.5e-19 Score=169.98 Aligned_cols=89 Identities=33% Similarity=0.581 Sum_probs=75.4
Q ss_pred CCCccccccccccccCCCcccccccccceeeEeccccCCCCceeeeccC-----cccccCCCCCCCCCC-----Cccccc
Q psy17215 69 GNEQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSG-----ACHVCDAGSPRGRFP-----AEYLTD 138 (174)
Q Consensus 69 ~~~~~~~C~p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~-----~C~~Cd~~~p~~~Hp-----~~~ltD 138 (174)
....+..|+|..+||++||.. ++.|+||||+++||+||+++. +|++||++.|++.|+ +++++.
T Consensus 29 ~~c~~~sCyP~tGnLliGR~~-------~L~AsSTCGl~~pe~yCi~Shlqdq~KCf~Cdsr~p~~~~~~pshrienVvs 101 (1758)
T KOG0994|consen 29 SGCSRGSCYPATGNLLIGRAR-------KLTASSTCGLNKPERYCIVSHLQDQKKCFKCDSRYPHKAHLNPSHRIENVVS 101 (1758)
T ss_pred CccccCCcCCCccceeecchh-------heeecccccCCCCcceEEeeccccccccccccCCCccccCCChhhhhhhhhh
Confidence 357899999999999999944 899999999999999999984 899999999976555 555443
Q ss_pred cC-CCCCceeecCCCCCCCCCCCCCCCeeEEEEeCC
Q psy17215 139 LN-NPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLE 173 (174)
Q Consensus 139 ~~-~~~~~TwWQS~~~~~~~~~~~~p~~VtltLdLg 173 (174)
.. .+.|.|||||+++. ++|+|+|||+
T Consensus 102 s~~p~r~~~WWQSengv---------~~vtIQLDLE 128 (1758)
T KOG0994|consen 102 SFAPPRNITWWQSENGV---------ENVTIQLDLE 128 (1758)
T ss_pred ccCCCcccchhhcccCC---------CcceEEeehh
Confidence 33 44557999999987 8999999997
No 9
>KOG1836|consensus
Probab=99.31 E-value=1.3e-12 Score=132.31 Aligned_cols=95 Identities=22% Similarity=0.326 Sum_probs=76.9
Q ss_pred eeEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCceeeecchhhhhhhcCCCCCCCccc-CCCcccccccccc
Q psy17215 3 FCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISR-GNEQEALCTDRHK 81 (174)
Q Consensus 3 v~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa~~C~~~Fg~~~~~~~~~-~~~~~~~C~p~~s 81 (174)
|+++++++++|++.++++++. |||||++|+||||+|++++|+||||||.+|...+..+....+.. .+++.++|++.|+
T Consensus 123 ~~~~~~~~g~~~~i~~~~~~~-~sprp~s~~l~k~~~~~g~~~p~q~~s~s~~~~~~~~~~~~l~~~~~d~~~~Ct~e~S 201 (1705)
T KOG1836|consen 123 VTNLTDLLGKFRIITVVRKKA-NSPRPESFGLYKSTDEDGPWCPWQFCSGSCRDCLSRPDRQALRGGENDDAAICTTEFS 201 (1705)
T ss_pred hhhhhhcCCeEEEEEeeeecc-CCCCCccceeecccccCCCcCCceeecccCccccccCCcccccCCCCCccceeccccc
Confidence 778888888877777665555 59999999999999999999999999999998888887777654 4889999999999
Q ss_pred ccCCCcccccccccceeeEeccccC
Q psy17215 82 KQGKGKMSRRRTNCQEVKVNSVCGL 106 (174)
Q Consensus 82 ~la~g~~~~~~~~~~~v~assTCG~ 106 (174)
++-.-. +-..|-|++..
T Consensus 202 ~i~PL~--------ng~i~~s~l~g 218 (1705)
T KOG1836|consen 202 DISPLE--------NGEIAFSTLEG 218 (1705)
T ss_pred cCcccc--------cchhhhhhhcC
Confidence 984222 03556777774
No 10
>KOG1836|consensus
Probab=98.93 E-value=5.5e-10 Score=113.65 Aligned_cols=87 Identities=21% Similarity=0.295 Sum_probs=73.7
Q ss_pred CccccccccccccCCCcccccccccceeeEeccccCCCCceeeeccC-------cccccCCCCCCCCCCCccccccCCCC
Q psy17215 71 EQEALCTDRHKKQGKGKMSRRRTNCQEVKVNSVCGLESPERYCDTSG-------ACHVCDAGSPRGRFPAEYLTDLNNPS 143 (174)
Q Consensus 71 ~~~~~C~p~~s~la~g~~~~~~~~~~~v~assTCG~~~pe~~C~~~~-------~C~~Cd~~~p~~~Hp~~~ltD~~~~~ 143 (174)
.....|.|++.+.+... .+.++.|||+.++ .||...+ .|.+|+++.++..||+++|||.+.
T Consensus 37 ~r~q~~~pe~~~aa~~~---------~~~~~~~cg~~~~-~~c~~~~~~g~~~~~C~~C~~ag~~~~h~~~~~id~~~-- 104 (1705)
T KOG1836|consen 37 GRQQASCPEFANAAGNL---------LATETNTCGLKGG-GYCVPCNCNGHSNGYCVICNAAGEHCEHPASNLIDGAV-- 104 (1705)
T ss_pred CcccccccccccccCCc---------ceeEeccccCCCC-CcCcccCCcCCCCCcceeCCCCCcccccCHhhhccCCc--
Confidence 33488999999999999 9999999998777 9999753 599999999999999999999876
Q ss_pred CceeecCCCCCCCCCCCCCCCeeEEEEeCC
Q psy17215 144 NVTCWRSEAQTSVNSLSASPDNVTLTLSLE 173 (174)
Q Consensus 144 ~~TwWQS~~~~~~~~~~~~p~~VtltLdLg 173 (174)
..|||||+++. .+.+++ .||++++|+
T Consensus 105 ~~twwQS~~l~---~g~q~~-~~~~~~~~~ 130 (1705)
T KOG1836|consen 105 GETWWQSPPLP---EGHQYN-FVTNLTDLL 130 (1705)
T ss_pred CCccccCCCCC---cccccc-hhhhhhhcC
Confidence 68999999997 567774 566666554
No 11
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=95.87 E-value=0.015 Score=41.81 Aligned_cols=44 Identities=27% Similarity=0.448 Sum_probs=38.7
Q ss_pred eeEEeeCCCeEEEEEEEEEeeeCCC----CCCeEEEEEecCCCCCceeeec
Q psy17215 3 FCEGQSYGKKFELTYISLSFCPKSI----KPDSLAIYKSQDFGKSWQPLQF 49 (174)
Q Consensus 3 v~ltldL~~~f~v~~v~l~f~~~sp----rP~s~~iekS~d~G~~W~p~qy 49 (174)
..|+|||++.+.|..|.|.+. .. +|..+.|+-|.| |..|.++.=
T Consensus 38 ~~i~idl~~~~~i~~i~i~~~--~~~~~~~~~~~~i~~s~d-g~~w~~~~~ 85 (129)
T PF00754_consen 38 QWIQIDLGKPYTISGISIQFR--NDGNNGRPKSFKIEYSND-GSNWTTVAS 85 (129)
T ss_dssp EEEEEEEEEEEEEEEEEEEEE--SSTTTEEEEEEEEEEESS-SSSEEEEEE
T ss_pred ceEEEEeeeeEecceeeeccc--ccccceeeeeeeeeeecc-ccccccccc
Confidence 468999999999999999999 44 899999999988 689988764
No 12
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=95.48 E-value=0.012 Score=27.65 Aligned_cols=12 Identities=50% Similarity=0.938 Sum_probs=9.7
Q ss_pred EEecCCCCCcee
Q psy17215 35 YKSQDFGKSWQP 46 (174)
Q Consensus 35 ekS~d~G~~W~p 46 (174)
++|.|.|++|++
T Consensus 1 ~~S~D~G~TW~~ 12 (12)
T PF02012_consen 1 YYSTDGGKTWKK 12 (12)
T ss_dssp EEESSTTSS-EE
T ss_pred CEeCCCcccCcC
Confidence 589999999985
No 13
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=95.02 E-value=0.059 Score=40.08 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=37.6
Q ss_pred eEEeeCCCeEEEEEEEEEeeeC---CCCCCeEEEEEecCCCCCceeee
Q psy17215 4 CEGQSYGKKFELTYISLSFCPK---SIKPDSLAIYKSQDFGKSWQPLQ 48 (174)
Q Consensus 4 ~ltldL~~~f~v~~v~l~f~~~---sprP~s~~iekS~d~G~~W~p~q 48 (174)
-|+|||++.+.|+.|.|+...+ ..++..+.|+-|.| |.+|+++.
T Consensus 47 wi~vDL~~~~~i~~v~i~~~~~~~~~~~~~~~~i~~s~d-g~~W~~~~ 93 (143)
T cd00057 47 WLQVDLGKTRRVTGIQTQGRKGGGSSEWVTSYKVQYSLD-GETWTTYK 93 (143)
T ss_pred eEEEECCCCEEEEEEEEccCCCCCccCeeEEEEEEEECC-CCCEeEEE
Confidence 4899999999999999987621 56788999999999 89999874
No 14
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=81.50 E-value=1.4 Score=34.12 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=21.8
Q ss_pred CCCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEE
Q psy17215 129 GRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTL 170 (174)
Q Consensus 129 ~~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltL 170 (174)
..|.++.|+|. +..|+|||... +-|.-++|++
T Consensus 12 n~~~~~~L~D~---~~~tyWQSdG~-------q~pH~I~i~f 43 (131)
T cd08665 12 NPHRANKLTDG---NPKTYWESNGS-------TGSHYINIHM 43 (131)
T ss_pred CcccHHHhhcC---CCCceEccCCC-------CCCeEEEEEE
Confidence 35788899993 45699999843 3346666654
No 15
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=81.06 E-value=1.1 Score=34.82 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=21.9
Q ss_pred CCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEEe
Q psy17215 130 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLS 171 (174)
Q Consensus 130 ~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltLd 171 (174)
-+++..|+|. +..|+|||... + |.-++|+++
T Consensus 17 g~gv~~L~D~---~~~TyWQSDg~-------q-PH~I~i~f~ 47 (139)
T cd08366 17 GNGVDQLRDD---SLDTYWQSDGP-------Q-PHLINIQFS 47 (139)
T ss_pred CCCHHHhcCC---CCCccCCCCCC-------C-CEEEEEEec
Confidence 5789999993 45699999732 2 566666654
No 16
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=80.39 E-value=1.3 Score=34.24 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=14.8
Q ss_pred CCCccccccCCCCCceeecCCC
Q psy17215 131 FPAEYLTDLNNPSNVTCWRSEA 152 (174)
Q Consensus 131 Hp~~~ltD~~~~~~~TwWQS~~ 152 (174)
|.++.|+|. +..|+|||..
T Consensus 15 ~gv~~L~D~---~~~tyWQSDG 33 (131)
T cd08365 15 ADASRLTDG---NTSTYWQSDG 33 (131)
T ss_pred hhHHHhhcC---CCCceEccCC
Confidence 478889983 4569999983
No 17
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=77.96 E-value=1.8 Score=33.67 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=20.5
Q ss_pred CCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEE
Q psy17215 131 FPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTL 170 (174)
Q Consensus 131 Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltL 170 (174)
+.++.|+|. +..|+|||... +.|.-++|++
T Consensus 19 ~gv~~L~D~---~~~tyWQSdG~-------qgpH~I~l~f 48 (134)
T cd08666 19 FNVSCLTDG---DPDTYWESDGS-------QGQHWIRLHM 48 (134)
T ss_pred CCHHHhccC---CCCccEecCCC-------CCCeEEEEEE
Confidence 678889983 45699999732 3345666654
No 18
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=77.41 E-value=1.7 Score=33.63 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=19.7
Q ss_pred CCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEE
Q psy17215 131 FPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTL 170 (174)
Q Consensus 131 Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltL 170 (174)
+.++.|+|. +..|+|||... +.|.-++|++
T Consensus 14 ~gv~~L~D~---~~~TYWQSDG~-------q~pH~I~i~f 43 (131)
T cd08667 14 ADIDRMTDG---ETSTYWQSDGS-------ARSHWIRLKM 43 (131)
T ss_pred hhhHHhhcC---CCCccCccCCC-------CCCeEEEEEe
Confidence 467889983 45699999843 3345555543
No 19
>KOG3437|consensus
Probab=75.34 E-value=1.9 Score=35.13 Aligned_cols=31 Identities=26% Similarity=0.582 Sum_probs=24.0
Q ss_pred CCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEEe
Q psy17215 130 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLS 171 (174)
Q Consensus 130 ~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltLd 171 (174)
-||+++|.|. +..|+|||..+. |..++|+.+
T Consensus 36 g~pvd~l~Dd---n~etyWqSdG~~--------PH~i~I~F~ 66 (184)
T KOG3437|consen 36 GFPVDNLRDD---NPETYWQSDGSQ--------PHLINIQFH 66 (184)
T ss_pred CCChHHhhcC---ChhHheecCCCC--------CeEEEEEEE
Confidence 4999999983 457999998654 577887764
No 20
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=70.50 E-value=9.5 Score=28.51 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=27.8
Q ss_pred eEEeeCCCeEEEEEEEEEeeeCCCC-CCeEEEEEecCCCCCceeee
Q psy17215 4 CEGQSYGKKFELTYISLSFCPKSIK-PDSLAIYKSQDFGKSWQPLQ 48 (174)
Q Consensus 4 ~ltldL~~~f~v~~v~l~f~~~spr-P~s~~iekS~d~G~~W~p~q 48 (174)
-|+|||++.+.|+.|.++....... -....+ -|.| |..|.++.
T Consensus 46 wlqvDLg~~~~v~~i~~qg~~~~~~~~~~~~~-~s~d-g~~W~~~~ 89 (139)
T smart00231 46 WIQVDLGRTRTVTGVITGGRHGDGDGVTYKLL-YSDD-GNNWTTYK 89 (139)
T ss_pred eeEeeccCcEEEEEEEecccCCCCcEEEEEEE-EEeC-CCCEeEEe
Confidence 4899999999999998875311111 122334 4555 78898774
No 21
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=67.97 E-value=4.5 Score=32.16 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.6
Q ss_pred CCCCccccccCCCCCceeecCCC
Q psy17215 130 RFPAEYLTDLNNPSNVTCWRSEA 152 (174)
Q Consensus 130 ~Hp~~~ltD~~~~~~~TwWQS~~ 152 (174)
.|.++.|+|. ..|+|||..
T Consensus 37 ~~~~~~L~D~----~~TYWQSdG 55 (152)
T cd08664 37 ENQAKRLIDG----SGSYWQSSG 55 (152)
T ss_pred cccHHHhcCC----CCCeeccCC
Confidence 5889999993 569999984
No 22
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=67.07 E-value=4.6 Score=31.12 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=15.1
Q ss_pred CCccccccCCCCCceeecCCCC
Q psy17215 132 PAEYLTDLNNPSNVTCWRSEAQ 153 (174)
Q Consensus 132 p~~~ltD~~~~~~~TwWQS~~~ 153 (174)
+++.|.|. +..|+|||...
T Consensus 15 gv~~L~D~---~~~tyWQSdG~ 33 (129)
T cd08159 15 PVSRLTDG---NYDTYWQSDGS 33 (129)
T ss_pred cHHHhcCC---CCCccCCCCCC
Confidence 88899983 45699999854
No 23
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=62.80 E-value=4.9 Score=32.90 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=16.0
Q ss_pred CCCCc-cccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEE
Q psy17215 130 RFPAE-YLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTL 170 (174)
Q Consensus 130 ~Hp~~-~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltL 170 (174)
.|++. .|+|. +..|+|||... + |.-++|++
T Consensus 44 g~gv~~~LrD~---~~~TyWQSDG~-------q-pH~I~i~f 74 (193)
T PF03256_consen 44 GFGVAELLRDG---STETYWQSDGS-------Q-PHWITIQF 74 (193)
T ss_dssp TBSCHGHCHSS----TT--EE--SS-------S-SEEEEEEE
T ss_pred CCCchheeeCC---ChhHhhccCCC-------C-CEEEEEEE
Confidence 47777 67783 56799999643 2 46666655
No 24
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=53.99 E-value=5.8 Score=31.97 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=18.5
Q ss_pred CCCCCCccccccCCCCCceeecCCCCC
Q psy17215 128 RGRFPAEYLTDLNNPSNVTCWRSEAQT 154 (174)
Q Consensus 128 ~~~Hp~~~ltD~~~~~~~TwWQS~~~~ 154 (174)
..-||...+-|. +-.|+|||....
T Consensus 38 K~g~p~r~~ldd---n~dtyWqsDg~q 61 (189)
T COG5156 38 KRGHPLRELLDD---NMDTYWQSDGVQ 61 (189)
T ss_pred ccCCcHHHHhhc---chhhhhccCCCC
Confidence 457999998883 346999999763
No 25
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=53.59 E-value=8.8 Score=35.33 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=19.5
Q ss_pred CCCCeEEEEEecCCCCCceeeecchh
Q psy17215 27 IKPDSLAIYKSQDFGKSWQPLQFYSS 52 (174)
Q Consensus 27 prP~s~~iekS~d~G~~W~p~qyfa~ 52 (174)
.-|.+|+|-|-.-.| +|+||.-...
T Consensus 280 SNPGAWLILRP~~~g-sWkPWGRLEA 304 (460)
T PF06219_consen 280 SNPGAWLILRPDGDG-SWKPWGRLEA 304 (460)
T ss_pred cCCCeEEEEecCCCC-Ccccchhhhh
Confidence 359999999985545 9999986654
No 26
>cd02847 Chitobiase_C_term Chitobiase C-terminus domain. Chitobiase (AKA N-acetylglucosaminidase) digests the beta, 1-4 glycosidic bonds of the N-acetylglucosamine (NAG) oligomers found in chitin, an important structural element of fungal cell wall and arthropod exoskeletons. It is thought to proceed through an acid-base reaction mechanism, in which one protein carboxylate acts as catalytic acid, while the nucleophile is the polar acetamido group of the sugar in a substrate-assisted reaction with retention of the anomeric configuration. The C-terminus of chitobiase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chit
Probab=51.54 E-value=11 Score=26.51 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=18.1
Q ss_pred CCCCCeEEEEEecCCCCCceeeec
Q psy17215 26 SIKPDSLAIYKSQDFGKSWQPLQF 49 (174)
Q Consensus 26 sprP~s~~iekS~d~G~~W~p~qy 49 (174)
.+.|. +.|+-+.|.|.+|++|+-
T Consensus 28 ~~~pg-~~i~Yt~dgg~~w~~Y~~ 50 (78)
T cd02847 28 VSLPG-LTLQYSTDGGKNWNIYDA 50 (78)
T ss_pred ccCCC-cEEEEEecCCccCeeccc
Confidence 65665 668999999999999653
No 27
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=48.62 E-value=18 Score=26.40 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=20.6
Q ss_pred CCCCccccccCCCCCceeecCCCCCCCCCCCCCCCeeEEEEeCCC
Q psy17215 130 RFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK 174 (174)
Q Consensus 130 ~Hp~~~ltD~~~~~~~TwWQS~~~~~~~~~~~~p~~VtltLdLgk 174 (174)
.+.++++ |.+ ..|.|.+.... .+.-|+|||++
T Consensus 23 ~~~~~~~-dg~---~~t~W~~~~~~---------~~~wi~vDL~~ 54 (143)
T cd00057 23 GWEASRA-RLN---SDNAWTPAVND---------PPQWLQVDLGK 54 (143)
T ss_pred CCCcCee-ecC---CCCcccCCCCC---------CCceEEEECCC
Confidence 3677777 753 25788876531 24568888875
No 28
>KOG4276|consensus
Probab=42.74 E-value=44 Score=24.97 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=39.7
Q ss_pred EEeeCCCeEEEEEEEEEeeeCCCCCC--eEEEEEecCCCCCceeeecchhhhh
Q psy17215 5 EGQSYGKKFELTYISLSFCPKSIKPD--SLAIYKSQDFGKSWQPLQFYSSQCK 55 (174)
Q Consensus 5 ltldL~~~f~v~~v~l~f~~~sprP~--s~~iekS~d~G~~W~p~qyfa~~C~ 55 (174)
..||||-..+.+.-.++|.--..|-+ -|.+.-|+| |++|..+.---.||.
T Consensus 10 f~iDLG~~vip~~y~lrh~rgygRsalRnW~fQgS~D-gktWt~l~vH~DD~s 61 (113)
T KOG4276|consen 10 FAIDLGLEVIPTAYTLRHARGYGRSALRNWKFQGSKD-GKTWTDLRVHVDDKS 61 (113)
T ss_pred EEEecCceEeeeeeeeeecccccHHHhhheeeecccc-CCcceeEEEEecccc
Confidence 57999999999988999882223332 389999999 999999988777776
No 29
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=40.25 E-value=1e+02 Score=25.06 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=23.7
Q ss_pred eCCCeEEEEE-EEEEeeeCCCCCCeEEEEEecCCCCCceeeecch
Q psy17215 8 SYGKKFELTY-ISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYS 51 (174)
Q Consensus 8 dL~~~f~v~~-v~l~f~~~sprP~s~~iekS~d~G~~W~p~qyfa 51 (174)
+-.....|.+ +.-... .-....+...+|.|+|+||....-..
T Consensus 56 ~~~g~l~l~~~~~~~~~--~~~~~~~~~~~S~D~G~TWs~~~~l~ 98 (275)
T PF13088_consen 56 DPDGRLWLFYSAGSSGG--GWSGSRIYYSRSTDGGKTWSEPTDLP 98 (275)
T ss_dssp ETTSEEEEEEEEEETTE--SCCTCEEEEEEESSTTSS-EEEEEEH
T ss_pred eCCCCEEEEEEEccCCC--CCCceeEEEEEECCCCCCCCCccccc
Confidence 4455555555 222222 22233344499999999999998433
No 30
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=37.92 E-value=56 Score=28.58 Aligned_cols=40 Identities=30% Similarity=0.410 Sum_probs=28.5
Q ss_pred eeCCCeEEEEEEEEEeeeCCCCCCeE-----EEEEecCCCCCceeee
Q psy17215 7 QSYGKKFELTYISLSFCPKSIKPDSL-----AIYKSQDFGKSWQPLQ 48 (174)
Q Consensus 7 ldL~~~f~v~~v~l~f~~~sprP~s~-----~iekS~d~G~~W~p~q 48 (174)
|.++.+-.|.|..++-- .+.|..| .|.+|.|.|.+|+...
T Consensus 101 I~v~~~~Yl~~msv~~w--g~~~G~W~tn~S~i~~S~D~G~tW~~~~ 145 (316)
T PF13810_consen 101 ISVGGRQYLHYMSVRNW--GNVPGSWTTNYSGIAYSDDNGETWTVVP 145 (316)
T ss_pred EEECCcEEEEEEEEccC--CCCCCccccCceEEEEeCCCCCCceeCC
Confidence 34555555777777555 4445554 4999999999999887
No 31
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=36.79 E-value=59 Score=26.44 Aligned_cols=18 Identities=39% Similarity=0.755 Sum_probs=15.3
Q ss_pred eEEEEEecCCCCCceeee
Q psy17215 31 SLAIYKSQDFGKSWQPLQ 48 (174)
Q Consensus 31 s~~iekS~d~G~~W~p~q 48 (174)
.+.+.+|.|.|++|++.+
T Consensus 183 ~~~~~~S~D~G~TWs~~~ 200 (275)
T PF13088_consen 183 DIYISRSTDGGRTWSPPQ 200 (275)
T ss_dssp EEEEEEESSTTSS-EEEE
T ss_pred cEEEEEECCCCCcCCCce
Confidence 899999999999999844
No 32
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=29.16 E-value=1.8e+02 Score=21.54 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=34.9
Q ss_pred eeEEeeCCCeEEEEEEEEEeee-----CCCCCCeEEEEEecCCCCC-ceeeecc
Q psy17215 3 FCEGQSYGKKFELTYISLSFCP-----KSIKPDSLAIYKSQDFGKS-WQPLQFY 50 (174)
Q Consensus 3 v~ltldL~~~f~v~~v~l~f~~-----~sprP~s~~iekS~d~G~~-W~p~qyf 50 (174)
-.|+|.|.+...|+.|.|...+ .+-.|..|-|+-+.|.... |..+.=|
T Consensus 32 ~~~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~~~~~~LG~f 85 (135)
T PF07738_consen 32 GWLTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPDEEWVLLGEF 85 (135)
T ss_dssp EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSSSTS--EEEEEE
T ss_pred eEEEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEecccccceeeeceE
Confidence 4689999999999999997542 2568888999999998766 8777644
No 33
>PF07866 DUF1653: Protein of unknown function (DUF1653); InterPro: IPR023387 This entry represents the structural domain found in DUF1653, a protein family of unknown function. ; PDB: 3BE3_B.
Probab=26.13 E-value=1.1e+02 Score=20.72 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=20.3
Q ss_pred CCeEEEEEEEEEeeeCCCCCCeEEEEEec-CCCCCc
Q psy17215 10 GKKFELTYISLSFCPKSIKPDSLAIYKSQ-DFGKSW 44 (174)
Q Consensus 10 ~~~f~v~~v~l~f~~~sprP~s~~iekS~-d~G~~W 44 (174)
|+.|+|..+-. . |--.+-|+|||.. ++++-|
T Consensus 9 G~~Y~Vl~~A~--h--sEt~E~~VVY~~ly~~~~~w 40 (64)
T PF07866_consen 9 GGLYEVLGVAR--H--SETEEEMVVYRALYGDGGLW 40 (64)
T ss_dssp S-EEEEEEEEE--E--TTTTEEEEEEEESS--SSEE
T ss_pred CCeEEEEEEEE--e--CCCCccEEEEEEccCCCCee
Confidence 46788777755 3 6677899999995 445555
No 34
>KOG4350|consensus
Probab=24.28 E-value=22 Score=32.98 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=33.8
Q ss_pred eEEeeCCCeEEEEEEEEEeeeCCCCCCeEEEEEecCCCCCce
Q psy17215 4 CEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQ 45 (174)
Q Consensus 4 ~ltldL~~~f~v~~v~l~f~~~sprP~s~~iekS~d~G~~W~ 45 (174)
.|.|+||+.|.|.+|+|.|--+-.|--+--||-|+|. ..|.
T Consensus 328 gi~i~LG~p~iINhIrmllWdrdsraysY~veVSmD~-~hW~ 368 (620)
T KOG4350|consen 328 GIQIDLGKPFIINHIRMLLWDRDSRAYSYQVEVSMDD-AHWN 368 (620)
T ss_pred eEEEecCCchhhhhhhhhhhcccccceEEEEEEecch-hhhH
Confidence 5899999999999999877646778889999999994 3453
No 35
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=23.90 E-value=57 Score=28.53 Aligned_cols=26 Identities=42% Similarity=0.634 Sum_probs=15.4
Q ss_pred CCeEEEEEecCCCCCceeeecch-hhhh
Q psy17215 29 PDSLAIYKSQDFGKSWQPLQFYS-SQCK 55 (174)
Q Consensus 29 P~s~~iekS~d~G~~W~p~qyfa-~~C~ 55 (174)
..+|||| |.|+|.+|.-=.-.+ ..|.
T Consensus 148 ~~SlIiY-S~d~g~~W~lskg~s~~gC~ 174 (310)
T PF13859_consen 148 TVSLIIY-STDDGKTWKLSKGMSPAGCS 174 (310)
T ss_dssp EEEEEEE-ESSTTSS-EE-S----TT-E
T ss_pred eEEEEEE-ECCCccceEeccccCCCCcc
Confidence 4789888 899999998655443 3444
No 36
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=20.67 E-value=68 Score=27.99 Aligned_cols=16 Identities=50% Similarity=0.972 Sum_probs=13.7
Q ss_pred EEEEecCCCCCceeee
Q psy17215 33 AIYKSQDFGKSWQPLQ 48 (174)
Q Consensus 33 ~iekS~d~G~~W~p~q 48 (174)
.|+||.|.|++|+..-
T Consensus 125 ~iy~T~DgG~tW~~~~ 140 (302)
T PF14870_consen 125 AIYRTTDGGKTWQAVV 140 (302)
T ss_dssp -EEEESSTTSSEEEEE
T ss_pred cEEEeCCCCCCeeEcc
Confidence 6999999999999765
No 37
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=20.43 E-value=76 Score=27.70 Aligned_cols=16 Identities=50% Similarity=0.970 Sum_probs=12.2
Q ss_pred EEEEecCCCCCceeee
Q psy17215 33 AIYKSQDFGKSWQPLQ 48 (174)
Q Consensus 33 ~iekS~d~G~~W~p~q 48 (174)
.|.|+.|.|++|++..
T Consensus 38 ~il~T~DGG~tW~~~~ 53 (302)
T PF14870_consen 38 TILKTTDGGKTWQPVS 53 (302)
T ss_dssp EEEEESSTTSS-EE--
T ss_pred EEEEECCCCccccccc
Confidence 5899999999999986
No 38
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=20.08 E-value=71 Score=27.19 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.2
Q ss_pred CeEEEEEecCCCCCceeeecchhhh
Q psy17215 30 DSLAIYKSQDFGKSWQPLQFYSSQC 54 (174)
Q Consensus 30 ~s~~iekS~d~G~~W~p~qyfa~~C 54 (174)
..+++.+|.|.|++|.+-+..+..-
T Consensus 46 ~~iv~~~S~D~G~tW~~~~~i~~~~ 70 (351)
T cd00260 46 IDIVARRSTDGGKTWSPSTVISDGD 70 (351)
T ss_pred cceeEEEeccCCCcccccEEehhcC
Confidence 5699999999999999988877643
Done!