RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17215
         (174 letters)



>gnl|CDD|214532 smart00136, LamNT, Laminin N-terminal domain (domain VI).
           N-terminal domain of laminins and laminin-related
           protein such as Unc-6/ netrins.
          Length = 238

 Score =  100 bits (250), Expect = 2e-26
 Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 3/74 (4%)

Query: 10  GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRG 69
           GK+F +TY+ L FC  S +P SL I +  DFGK+WQP Q++SS C++ +GR   G I++G
Sbjct: 95  GKEFHVTYVILKFC--SPRP-SLWILERSDFGKTWQPWQYFSSDCRRTFGRPPRGPITKG 151

Query: 70  NEQEALCTDRHKKQ 83
           NE E +CT  +   
Sbjct: 152 NEDEVICTSEYSDI 165



 Score = 94.0 bits (234), Expect = 4e-24
 Identities = 41/84 (48%), Positives = 44/84 (52%), Gaps = 12/84 (14%)

Query: 97  EVKVNSVCGLESPERYCDTSG------ACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRS 150
           EV   S CG   PERYC   G       C  CDA +PR   PAE LTD NNP+N T W+S
Sbjct: 19  EVTATSTCGEPGPERYCKLVGHTEQGKKCDYCDARNPRRSHPAENLTDGNNPNNPTWWQS 78

Query: 151 EAQTSVNSLSASPDNVTLTLSLEK 174
           E       LS  P NV LTL L K
Sbjct: 79  E------PLSNGPQNVNLTLDLGK 96


>gnl|CDD|215682 pfam00055, Laminin_N, Laminin N-terminal (Domain VI). 
          Length = 237

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 12/86 (13%)

Query: 97  EVKVNSVCGLESPERYCDTSG------ACHVCDAGSP--RGRFPAEYLTDLNNPSNVTCW 148
            +   S CGL  PE YC  S        C +CD+ SP  R   P  +LTD  NP + T W
Sbjct: 13  ALSATSTCGLHGPEPYCILSHLQPRDKKCFLCDSNSPNPRESHPISFLTDTFNPQDTTWW 72

Query: 149 RSEAQTSVNSLSASPDNVTLTLSLEK 174
           +SE  T  N +     NVT+TL LE 
Sbjct: 73  QSE--TMQNGVQY--PNVTITLDLEA 94



 Score = 50.2 bits (120), Expect = 6e-08
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 10  GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRG 69
             +F  TY+ + F  K+ +P ++   +S DFG  W P Q+Y+  C+  Y       I  G
Sbjct: 93  EAEFHFTYVIIKF--KTFRPAAMIYERSSDFGT-WIPYQYYAYSCESTYPGIPRRPIRTG 149

Query: 70  -NEQEALCTDRHKK 82
             E + +CT R+  
Sbjct: 150 RAEDDVICTSRYSD 163


>gnl|CDD|237468 PRK13684, PRK13684, Ycf48-like protein; Provisional.
          Length = 334

 Score = 28.4 bits (64), Expect = 1.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 30  DSLAIYKSQDFGKSWQ 45
           +  AIY++ D GK+W+
Sbjct: 150 NVGAIYRTTDGGKNWE 165


>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase.  This family
           includes a range of O-methyltransferases. These enzymes
           utilise S-adenosyl methionine.
          Length = 239

 Score = 28.4 bits (64), Expect = 1.8
 Identities = 8/35 (22%), Positives = 12/35 (34%)

Query: 100 VNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAE 134
            + +   +  E   D SG   + D G   G   A 
Sbjct: 84  HSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAA 118


>gnl|CDD|151383 pfam10936, DUF2617, Protein of unknown function DUF2617.  This
           bacterial family of proteins has no known function.
          Length = 163

 Score = 27.3 bits (61), Expect = 3.7
 Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 9/53 (16%)

Query: 117 GACHVCDAGSPRGRF-------PAEYLTDLNNPSNVTCWRSEAQTSVNSLSAS 162
           GA H      P GRF       P      L  P             V +L  +
Sbjct: 47  GASHQVTVEHPGGRFRETVSCLPGAAGRPL--PERAEGPGYRFTARVETLDPA 97


>gnl|CDD|237966 PRK15434, PRK15434, GDP-mannose mannosyl hydrolase NudD;
           Provisional.
          Length = 159

 Score = 26.6 bits (59), Expect = 4.8
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 2   HFCEGQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQ 45
           HF +    G  F   Y+ L F  + +  + L +   Q     W 
Sbjct: 87  HFYDDNFSGTDFTTHYVVLGFRLR-VAEEDLLLPDEQHDDYRWL 129


>gnl|CDD|188836 cd09452, LIM1_Enigma, The first LIM domain of Enigma.  The first
          LIM domain of Enigma: Enigma was initially
          characterized in humans as a protein containing three
          LIM domains at the C-terminus and a PDZ domain at
          N-terminus.  The third LIM domain specifically
          interacts with the insulin receptor and the second LIM
          domain interacts with the receptor tyrosine kinase Ret
          and the adaptor protein APS. Thus Enigma is implicated
          in signal transduction processes such as mitogenic
          activity, insulin related actin organization, and
          glucose metabolism. Enigma is expressed in multiple
          tissues, such as skeletal muscle, heart, bone and
          brain.  LIM domains are 50-60 amino acids in size and
          share two characteristic zinc finger motifs. The two
          zinc fingers contain eight conserved residues, mostly
          cysteines and histidines, which coordinately bond to
          two zinc atoms. LIM domains function as adaptors or
          scaffolds to support the assembly of multimeric protein
          complexes.
          Length = 52

 Score = 24.8 bits (54), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 40 FGKSWQPLQFYSSQCKKL 57
           G+S+ P +F  SQCKK+
Sbjct: 16 LGRSYHPEEFTCSQCKKV 33


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.315    0.130    0.400 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,087,570
Number of extensions: 666391
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 13
Length of query: 174
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 84
Effective length of database: 6,945,742
Effective search space: 583442328
Effective search space used: 583442328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.4 bits)