RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17215
(174 letters)
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 77.4 bits (190), Expect = 2e-17
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 10 GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRG 69
+F T++ ++F + +P ++ I +S DFGK+W ++++ C+ + +TG +
Sbjct: 111 EAEFHFTHLIMTFK--TFRPAAMLIERSSDFGKAWGVYRYFAYDCESSFPGISTGPMK-- 166
Query: 70 NEQEALCTDRH 80
+ +C R+
Sbjct: 167 KVDDIICDSRY 177
Score = 53.9 bits (129), Expect = 4e-09
Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 21/90 (23%)
Query: 97 EVKVNSVCGLESPERYCDTSGA-----CHVCDAGSPRGRF-------PAEYLTDLNNPSN 144
++ V S CGL PE YC S C +CD+ P +T
Sbjct: 32 KLSVTSTCGLHKPEPYCIVSHLQEDKKCFICDSRDPYHETLNPDSHLIENVVTTFAPNRL 91
Query: 145 VTCWRSEAQTSVNSLSASPDNVTLTLSLEK 174
W+SE +NVT+ L LE
Sbjct: 92 KIWWQSE---------NGVENVTIQLDLEA 112
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 73.7 bits (180), Expect = 5e-16
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 10 GKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI-SR 68
GK F++TY+ L F + +P+S AIYK W P Q+YS C+ Y + G I +
Sbjct: 109 GKAFDITYVRLKFH--TSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRTG 166
Query: 69 GNEQEALCTDRH 80
G+EQ+ALCTD
Sbjct: 167 GDEQQALCTDEF 178
Score = 67.1 bits (163), Expect = 7e-14
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 97 EVKVNSVCGLESPERYCDTSGA------CHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRS 150
V + CG PE YC +G CH+CDAG + A +LTD NN ++ T W+S
Sbjct: 31 TVVATNTCG-TPPEEYCVQTGVTGVTKSCHLCDAGQQHLQHGAAFLTDYNNQADTTWWQS 89
Query: 151 EAQTSVNSLSASPDNVTLTLSLEK 174
+ ++ + P+++ LTL L K
Sbjct: 90 Q---TMLAGVQYPNSINLTLHLGK 110
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 72.2 bits (176), Expect = 1e-15
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 8 SYGKKFELT-YISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV- 65
S+ K ELT I ++F S +PD + + KS D+G++WQP Q+Y++ C + V
Sbjct: 137 SWSKTIELTDNIVITFE--SGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVK 194
Query: 66 -ISRGNEQEALCTDRH 80
+S+ E +CT+ +
Sbjct: 195 DLSQHTVLEIICTEEY 210
Score = 57.2 bits (137), Expect = 3e-10
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 101 NSVCGLESPERYCDTSGA---CHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVN 157
+ CG + PE +C + CDA +P P E + D T W+S
Sbjct: 69 DITCG-DPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSA----TW 123
Query: 158 SLSASPDNVTLTLSLEK 174
P V +TLS K
Sbjct: 124 KEYPKPLQVNITLSWSK 140
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 70.7 bits (172), Expect = 4e-15
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 7 QSYGKKFELTY-ISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV 65
S+ K ELT + ++F +P + + KS D G++WQP QFY+ C + +G +A
Sbjct: 108 LSWNKTVELTDDVVMTFE--YGRPTVMVLEKSLDNGRTWQPYQFYAEDCMEAFGMSARRA 165
Query: 66 --ISRGNEQEALCTDRH 80
+S + LCT+ +
Sbjct: 166 RDMSSSSAHRVLCTEEY 182
Score = 62.6 bits (151), Expect = 3e-12
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 97 EVKVNSVCGLESPERYCDTSGA---CHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQ 153
+V+ + + + PER+C + CDA +P P + D T W+S
Sbjct: 36 KVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDKEEEGLATYWQSITW 95
Query: 154 TSVNSLSASPDNVTLTLSLEK 174
+ SP +TLS K
Sbjct: 96 SRY----PSPLEANITLSWNK 112
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 64.5 bits (156), Expect = 6e-13
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 8 SYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGR-TATGVI 66
G+ F + Y+ + F S +PD + +S DFG ++QP QF++S + R +
Sbjct: 113 DLGQVFHVAYVLIKFA-NSPRPDLWVLERSTDFGHTYQPWQFFASSKRDCLERFGPRTLE 171
Query: 67 SRGNEQEALCTDRH 80
+ + +CT +
Sbjct: 172 RITQDDDVICTTEY 185
Score = 44.9 bits (105), Expect = 3e-06
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 32/102 (31%)
Query: 97 EVKVNSVCGLESPER---------YCDTSGA---------------CHVCDAGSPRGRFP 132
+ ++ CG E+P R YC G C +C A + P
Sbjct: 23 RITASATCGEEAPTRSVSRPTEDLYCKLVGGPVAGGDPAQTIQGQYCDICTAANSNKAHP 82
Query: 133 AEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLEK 174
D W+S S + V +TL L +
Sbjct: 83 VSNAIDGTE----RWWQSP----PLSRGLEYNEVNVTLDLGQ 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.066
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 2 HFCEGQSYGKK--FELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSS 52
H + + F + ++ F + I+ DS A S + Q L+FY
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Length = 763
Score = 30.1 bits (67), Expect = 0.35
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 33 AIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI 66
A S D GK+++ + GR +
Sbjct: 105 AFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERL 138
Score = 29.3 bits (65), Expect = 0.61
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 33 AIYKSQDFGKSWQPLQFYSSQ 53
+Y S D G W L +
Sbjct: 709 GLYMSTDNGGLWTRLNDDAHN 729
Score = 28.6 bits (63), Expect = 1.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 34 IYKSQDFGKSWQPL 47
IY S DFG ++ L
Sbjct: 657 IYHSTDFGNTFTAL 670
Score = 28.6 bits (63), Expect = 1.4
Identities = 3/15 (20%), Positives = 8/15 (53%)
Query: 33 AIYKSQDFGKSWQPL 47
++ + D G +W +
Sbjct: 205 GLWVTWDGGANWSQV 219
Score = 28.2 bits (62), Expect = 1.7
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 34 IYKSQDFGKSWQPL 47
Y S D+GK+W
Sbjct: 570 PYTSSDYGKTWTAP 583
Score = 27.8 bits (61), Expect = 2.2
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 34 IYKSQDFGKSWQPL-QFYSSQCKKLYGRTATGVIS 67
Y+ W+P+ F + G G S
Sbjct: 45 TYRWNAAKWEWEPITDFIINNALAGNGANLLGTES 79
Score = 27.8 bits (61), Expect = 2.4
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 34 IYKSQDFGKSWQPLQFYSS 52
+++S D ++W +
Sbjct: 157 LWRSTDRAQTWSRMNQLPD 175
Score = 27.4 bits (60), Expect = 2.7
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 34 IYKSQDFGKSWQPLQ 48
+ S D GKS+
Sbjct: 611 FFVSTDGGKSYTKKG 625
Score = 27.0 bits (59), Expect = 4.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 34 IYKSQDFGKSWQPLQFYSS 52
+Y S+D G SW+ L ++
Sbjct: 338 VYLSRDAGNSWKDLGKLTT 356
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase;
beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1
b.69.13.1 PDB: 2ebs_A*
Length = 789
Score = 29.3 bits (65), Expect = 0.72
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 33 AIYKSQDFGKSWQPL 47
+Y + D G SW+P+
Sbjct: 193 GMYVTHDGGVSWEPV 207
Score = 28.9 bits (64), Expect = 0.90
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 33 AIYKSQDFGKSWQPL 47
+Y+S D G +W +
Sbjct: 711 GLYRSDDNGSTWTRV 725
Score = 28.9 bits (64), Expect = 0.94
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 33 AIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI 66
A Y S+D G+S+ + GR +
Sbjct: 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERL 126
Score = 28.2 bits (62), Expect = 1.6
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 34 IYKSQDFGKSWQPL 47
++ S DFG S+ +
Sbjct: 657 LFHSTDFGASFTRV 670
Score = 28.2 bits (62), Expect = 1.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 34 IYKSQDFGKSWQPLQFYSSQ 53
IY S D G +W+ + SS
Sbjct: 326 IYLSTDAGATWKDVTQLSSP 345
Score = 28.2 bits (62), Expect = 1.9
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 34 IYKSQDFGKSWQP 46
+ S D+GK+W
Sbjct: 571 PWYSHDYGKTWSV 583
Score = 27.8 bits (61), Expect = 2.3
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 34 IYKSQDFGKSWQPL 47
+ S D GKS+
Sbjct: 613 FFVSTDGGKSYAAK 626
Score = 27.4 bits (60), Expect = 2.7
Identities = 3/31 (9%), Positives = 11/31 (35%)
Query: 17 YISLSFCPKSIKPDSLAIYKSQDFGKSWQPL 47
Y++ + P +++ +W +
Sbjct: 245 YVTYADYPGPWGVTFGEVWRQNRTSGAWDDI 275
Score = 27.4 bits (60), Expect = 2.8
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 34 IYKSQDFGKSWQPL 47
Y+ W PL
Sbjct: 39 AYRWDAGTSKWIPL 52
Score = 27.4 bits (60), Expect = 3.4
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 34 IYKSQDFGKSWQPLQFYSS 52
I+KS D K+W +
Sbjct: 145 IWKSSDRAKTWTNVTSIPD 163
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold,
structural genomics, joint CEN structural genomics,
JCSG; 2.20A {Ralstonia eutropha}
Length = 394
Score = 29.0 bits (65), Expect = 0.75
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 34 IYKSQDFGKSWQPL 47
+++S D G +W
Sbjct: 83 VFRSDDGGGNWTEA 96
Score = 29.0 bits (65), Expect = 0.82
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 33 AIYKSQDFGKSWQPL 47
A+Y ++D G+SWQ
Sbjct: 314 AVYVTRDAGESWQRQ 328
Score = 28.3 bits (63), Expect = 1.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 33 AIYKSQDFGKSWQPL 47
+++S D G SW+P+
Sbjct: 139 GLFRSTDHGASWEPV 153
Score = 27.9 bits (62), Expect = 1.7
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 34 IYKSQDFGKSWQPL 47
+++S D G W+PL
Sbjct: 201 VFESTDAGTDWKPL 214
Score = 27.9 bits (62), Expect = 1.7
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 34 IYKSQDFGKSWQPL 47
I+ S D G+ WQ +
Sbjct: 365 IWASADEGEHWQCI 378
Score = 26.0 bits (57), Expect = 7.6
Identities = 3/13 (23%), Positives = 5/13 (38%)
Query: 33 AIYKSQDFGKSWQ 45
IY+ W+
Sbjct: 254 GIYRMDRREGVWK 266
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase,
family GH74; HET: GLC BGC GAL; 1.95A {Clostridium
thermocellum} PDB: 2cn2_A*
Length = 737
Score = 28.8 bits (64), Expect = 1.0
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 34 IYKSQDFGKSWQPLQ 48
++S D GK+W +
Sbjct: 680 FFRSDDAGKTWVRIN 694
Score = 28.8 bits (64), Expect = 1.1
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 33 AIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI 66
AI +S D G++W+ + GR+ +
Sbjct: 104 AILRSTDRGETWEKTILPFKMGGNMPGRSMGERL 137
Score = 28.8 bits (64), Expect = 1.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 33 AIYKSQDFGKSWQPL 47
+IY+S D G +W+ +
Sbjct: 223 SIYRSTDGGVTWKAV 237
Score = 28.0 bits (62), Expect = 1.6
Identities = 4/19 (21%), Positives = 13/19 (68%)
Query: 34 IYKSQDFGKSWQPLQFYSS 52
+++S D+G +W ++ + +
Sbjct: 157 LWRSTDYGVTWSKVESFPN 175
Score = 27.7 bits (61), Expect = 2.3
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 34 IYKSQDFGKSWQPL 47
Y+ ++W PL
Sbjct: 47 AYRWDPSTETWIPL 60
Score = 27.7 bits (61), Expect = 2.7
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 34 IYKSQDFGKSWQPL 47
I++S D G +W+ +
Sbjct: 330 IFRSTDGGATWKNI 343
Score = 27.3 bits (60), Expect = 3.2
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 34 IYKSQDFGKSWQPL 47
Y S D G ++
Sbjct: 588 FYISTDGGLTFTDT 601
Score = 26.9 bits (59), Expect = 4.1
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 34 IYKSQDFGKSWQPL 47
+ D G SW+
Sbjct: 548 PAVTTDNGNSWKVC 561
>2xbg_A YCF48-like protein; photosynthesis, photosystem II,
beta-propeller, assembly FAC; 1.50A
{Thermosynechococcus elongatus}
Length = 327
Score = 28.1 bits (62), Expect = 1.5
Identities = 4/14 (28%), Positives = 11/14 (78%)
Query: 34 IYKSQDFGKSWQPL 47
+ +++D G++W+P
Sbjct: 58 LMETRDGGQTWEPR 71
Score = 27.3 bits (60), Expect = 3.1
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 33 AIYKSQDFGKSWQPLQFYSSQCKKLYG 59
A+ SQD G++WQ Y
Sbjct: 271 ALLCSQDGGQTWQQDVDVKKVPSNFYK 297
>2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A
{Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A
Length = 367
Score = 27.5 bits (60), Expect = 2.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 32 LAIYKSQDFGKSWQPLQ 48
I KS+D GK+W+ +
Sbjct: 57 FPIVKSKDGGKTWKEIS 73
Score = 26.0 bits (56), Expect = 6.8
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 32 LAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI 66
+ +Y S+D G +W+ + + + L T V
Sbjct: 121 IEVYASRDKGYTWEFVSHVALGGEALPNPGLTPVW 155
>3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller,
Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide
complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo
sapiens}
Length = 685
Score = 27.3 bits (59), Expect = 3.1
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 35 YKSQDFGKSWQPLQFYSSQCK 55
+ S++FG W+ + K
Sbjct: 163 WVSKNFGGKWEEIHKAVCLAK 183
Score = 26.5 bits (57), Expect = 6.6
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 33 AIYKSQDFGKSWQPL 47
I++S DF K++
Sbjct: 119 RIFRSSDFAKNFVQT 133
>3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET:
AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A*
Length = 355
Score = 27.1 bits (59), Expect = 3.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 32 LAIYKSQDFGKSWQPLQ 48
IY+S+D GK+W +
Sbjct: 52 FPIYRSKDHGKTWNEIS 68
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL,
glycosidase, hydrolase, peptidoglycan-anchor, secreted;
1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Length = 438
Score = 26.6 bits (58), Expect = 5.1
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 25 KSIKPDSLAIYKSQDFGKSWQPLQ 48
S +L + S D G +W
Sbjct: 200 GSGAGGALRQFISLDDGGTWTDQG 223
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.400
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,459,553
Number of extensions: 128562
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 58
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.1 bits)