RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17215
         (174 letters)



>d2slia2 b.68.1.1 (A:277-759) Leech intramolecular
          trans-sialidase, C-terminal domain {North american
          leech (Macrobdella decora) [TaxId: 6405]}
          Length = 483

 Score = 27.7 bits (60), Expect = 0.82
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 32 LAIYKSQDFGKSWQPLQ 48
          +A  KS D G +W    
Sbjct: 49 IAFAKSTDGGNTWSEPT 65


>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific
           cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId:
           203496]}
          Length = 356

 Score = 27.5 bits (60), Expect = 0.95
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 33  AIYKSQDFGKSWQPLQFYSSQ 53
            +Y+S D G +W  +      
Sbjct: 281 GLYRSDDNGSTWTRVNDQEHN 301


>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific
          cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId:
          203496]}
          Length = 427

 Score = 26.7 bits (57), Expect = 1.6
 Identities = 5/18 (27%), Positives = 6/18 (33%)

Query: 30 DSLAIYKSQDFGKSWQPL 47
          D    Y+       W PL
Sbjct: 32 DIGGAYRWDAGTSKWIPL 49


>d1g5aa1 b.71.1.1 (A:555-628) Amylosucrase {Neisseria polysaccharea
           [TaxId: 489]}
          Length = 74

 Score = 24.4 bits (53), Expect = 2.9
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 138 DLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLS 171
           + NN   +   R+ A  +  + S  P  VT    
Sbjct: 6   NTNNKHIIGYIRNNALLAFGNFSEYPQTVTAHTL 39


>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum
           islandicum [TaxId: 2277]}
          Length = 176

 Score = 24.9 bits (54), Expect = 5.5
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 6   GQSYGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGV 65
             S  +  EL+          I         + D G + Q + +   +  K+ G    GV
Sbjct: 111 KLSQRELEELSRGYARAIAPLIGDVV--DIPAPDVGTNAQIMAWMVDEYSKIKGYNVPGV 168

Query: 66  IS 67
            +
Sbjct: 169 FT 170


>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 72

 Score = 23.7 bits (51), Expect = 6.3
 Identities = 6/25 (24%), Positives = 8/25 (32%)

Query: 119 CHVCDAGSPRGRFPAEYLTDLNNPS 143
                     G  P  Y+  L+ PS
Sbjct: 46  WLEGTLNGKTGLIPENYVEFLSGPS 70


>d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal
          domain {Micromonospora viridifaciens [TaxId: 1881]}
          Length = 356

 Score = 24.7 bits (52), Expect = 7.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 29 PDSLAIYKSQDFGKSWQPLQF 49
          P+S+   +S D G++W   Q 
Sbjct: 50 PNSILQRRSTDGGRTWGEQQV 70


>d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase
          {Vibrio cholerae [TaxId: 666]}
          Length = 364

 Score = 24.3 bits (51), Expect = 9.2
 Identities = 4/19 (21%), Positives = 7/19 (36%)

Query: 31 SLAIYKSQDFGKSWQPLQF 49
           +    S+D G +W     
Sbjct: 43 DIITRTSRDGGITWDTELN 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.130    0.400 

Gapped
Lambda     K      H
   0.267   0.0403    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 624,539
Number of extensions: 27017
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 10
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)