BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17223
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JSY|A Chain A, Crystal Structure Of Bovine Arrestin-2
pdb|1ZSH|A Chain A, Crystal Structure Of Bovine Arrestin-2 In Complex With
Inositol Hexakisphosphate (Ip6)
pdb|2WTR|A Chain A, Full Length Arrestin2
Length = 418
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 93/138 (67%), Positives = 113/138 (81%)
Query: 8 VTFGQERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAED 67
+T QERL+KKLG +A+PF FE+PP+ P SVTLQP P DTGK CGVDYE+KAF E E+
Sbjct: 97 LTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEE 156
Query: 68 KIHKRNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAV 127
KIHKRNSVRL IRK+ YAP + G QP+ E +++F+MS LHLEASLDKE+YYHGE I+V
Sbjct: 157 KIHKRNSVRLVIRKVQYAPERPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISV 216
Query: 128 NVHVANNSNRTVKKIKVS 145
NVHV NN+N+TVKKIK+S
Sbjct: 217 NVHVTNNTNKTVKKIKIS 234
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 5/62 (8%)
Query: 225 LYYHGESIAVNVHVANNSNRTVKKIKVS-----DICLFSTAQYKCTVAETESDCPIAPVS 279
+YYHGE I+VNVHV NN+N+TVKKIK+S DICLF+TAQYKC VA E+D +AP S
Sbjct: 207 IYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADDTVAPSS 266
Query: 280 MF 281
F
Sbjct: 267 TF 268
>pdb|2WTR|B Chain B, Full Length Arrestin2
Length = 418
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 93/138 (67%), Positives = 113/138 (81%)
Query: 8 VTFGQERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAED 67
+T QERL+KKLG +A+PF FE+PP+ P SVTLQP P DTGK CGVDYE+KAF E E+
Sbjct: 97 LTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEE 156
Query: 68 KIHKRNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAV 127
KIHKRNSVRL IRK+ YAP + G QP+ E +++F+MS LHLEASLDKE+YYHGE I+V
Sbjct: 157 KIHKRNSVRLVIRKVQYAPERPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISV 216
Query: 128 NVHVANNSNRTVKKIKVS 145
NVHV NN+N+TVKKIK+S
Sbjct: 217 NVHVTNNTNKTVKKIKIS 234
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 5/62 (8%)
Query: 225 LYYHGESIAVNVHVANNSNRTVKKIKVS-----DICLFSTAQYKCTVAETESDCPIAPVS 279
+YYHGE I+VNVHV NN+N+TVKKIK+S DICLF+TAQYKC VA E+D +AP S
Sbjct: 207 IYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADDTVAPSS 266
Query: 280 MF 281
F
Sbjct: 267 TF 268
>pdb|1G4M|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4M|B Chain B, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4R|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|3GD1|C Chain C, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
pdb|3GD1|E Chain E, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 393
Score = 204 bits (518), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 93/138 (67%), Positives = 113/138 (81%)
Query: 8 VTFGQERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAED 67
+T QERL+KKLG +A+PF FE+PP+ P SVTLQP P DTGK CGVDYE+KAF E E+
Sbjct: 97 LTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEE 156
Query: 68 KIHKRNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAV 127
KIHKRNSVRL IRK+ YAP + G QP+ E +++F+MS LHLEASLDKE+YYHGE I+V
Sbjct: 157 KIHKRNSVRLVIRKVQYAPERPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISV 216
Query: 128 NVHVANNSNRTVKKIKVS 145
NVHV NN+N+TVKKIK+S
Sbjct: 217 NVHVTNNTNKTVKKIKIS 234
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 5/62 (8%)
Query: 225 LYYHGESIAVNVHVANNSNRTVKKIKVS-----DICLFSTAQYKCTVAETESDCPIAPVS 279
+YYHGE I+VNVHV NN+N+TVKKIK+S DICLF+TAQYKC VA E+D +AP S
Sbjct: 207 IYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADDTVAPSS 266
Query: 280 MF 281
F
Sbjct: 267 TF 268
>pdb|3GC3|A Chain A, Crystal Structure Of Arrestin2s And Clathrin
Length = 385
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 93/138 (67%), Positives = 113/138 (81%)
Query: 8 VTFGQERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAED 67
+T QERL+KKLG +A+PF FE+PP+ P SVTLQP P DTGK CGVDYE+KAF E E+
Sbjct: 97 LTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEE 156
Query: 68 KIHKRNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAV 127
KIHKRNSVRL IRK+ YAP + G QP+ E +++F+MS LHLEASLDKE+YYHGE I+V
Sbjct: 157 KIHKRNSVRLVIRKVQYAPERPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISV 216
Query: 128 NVHVANNSNRTVKKIKVS 145
NVHV NN+N+TVKKIK+S
Sbjct: 217 NVHVTNNTNKTVKKIKIS 234
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 5/62 (8%)
Query: 225 LYYHGESIAVNVHVANNSNRTVKKIKVS-----DICLFSTAQYKCTVAETESDCPIAPVS 279
+YYHGE I+VNVHV NN+N+TVKKIK+S DICLF+TAQYKC VA E+D +AP S
Sbjct: 207 IYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADDTVAPSS 266
Query: 280 MF 281
F
Sbjct: 267 TF 268
>pdb|3P2D|A Chain A, Crystal Structure Of Arrestin-3 Reveals The Basis Of The
Difference In Receptor Binding Between Two Non-Visual
Subtypes
pdb|3P2D|B Chain B, Crystal Structure Of Arrestin-3 Reveals The Basis Of The
Difference In Receptor Binding Between Two Non-Visual
Subtypes
Length = 393
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 88/134 (65%), Positives = 106/134 (79%)
Query: 12 QERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAEDKIHK 71
QERL++KLG +A PFFF +P + P SVTLQP P DTGK CGVD+E++AF ++ E+K HK
Sbjct: 102 QERLLRKLGQHAHPFFFTIPQNLPCSVTLQPGPEDTGKACGVDFEIRAFCAKSLEEKSHK 161
Query: 72 RNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAVNVHV 131
RNSVRL IRK+ +AP K G QPS E ++ F+MS LHLEASLDKELYYHGE + VNVHV
Sbjct: 162 RNSVRLVIRKVQFAPEKPGPQPSAETTRHFLMSDRSLHLEASLDKELYYHGEPLNVNVHV 221
Query: 132 ANNSNRTVKKIKVS 145
NNS +TVKKIKVS
Sbjct: 222 TNNSTKTVKKIKVS 235
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 46/62 (74%), Gaps = 5/62 (8%)
Query: 225 LYYHGESIAVNVHVANNSNRTVKKIKVS-----DICLFSTAQYKCTVAETESDCPIAPVS 279
LYYHGE + VNVHV NNS +TVKKIKVS DICLFSTAQYKC VA+ E D ++P S
Sbjct: 208 LYYHGEPLNVNVHVTNNSTKTVKKIKVSVRQYADICLFSTAQYKCPVAQVEQDDQVSPSS 267
Query: 280 MF 281
F
Sbjct: 268 TF 269
>pdb|1SUJ|A Chain A, X-Ray Crystal Structure Of Ambystoma Tigrinum Cone
Arrestin
Length = 392
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 74/124 (59%), Positives = 95/124 (76%)
Query: 12 QERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAEDKIHK 71
QE+LMKKLG +A+PF F++ + P SVTLQP P DTGK CGVD+E+KAF E E+KIHK
Sbjct: 98 QEKLMKKLGAHAYPFCFKMGTNLPCSVTLQPGPDDTGKSCGVDFEVKAFCAENLEEKIHK 157
Query: 72 RNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAVNVHV 131
RNSV+L IRK+ +AP+ G P E++++FM+S LHLEASLDKE+YYHGE I VNV +
Sbjct: 158 RNSVQLVIRKVQFAPANLGVAPKTEITRQFMLSDRPLHLEASLDKEIYYHGEPINVNVKI 217
Query: 132 ANNS 135
N +
Sbjct: 218 NNTT 221
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 225 LYYHGESIAVNVHVANNSNRTVKKI-----KVSDICLFSTAQYKCTVAETESDCPIA 276
+YYHGE I VNV + N + + VKKI +V+D+ LFS +Y TV E++ +A
Sbjct: 204 IYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSLDKYVKTVCAEETNDTVA 260
>pdb|3UGX|A Chain A, Crystal Structure Of Visual Arrestin
pdb|3UGX|B Chain B, Crystal Structure Of Visual Arrestin
pdb|3UGX|C Chain C, Crystal Structure Of Visual Arrestin
pdb|3UGX|D Chain D, Crystal Structure Of Visual Arrestin
Length = 414
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/136 (55%), Positives = 89/136 (65%), Gaps = 3/136 (2%)
Query: 12 QERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETA---EDK 68
QE L+KKLG N +PF P P SV LQPAP D GK CGVD+E+KAF + EDK
Sbjct: 114 QESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDK 173
Query: 69 IHKRNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAVN 128
I K++SVRL IRK+ +AP G QP E S +F MS L L SL KE+YYHGE I V
Sbjct: 174 IPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVT 233
Query: 129 VHVANNSNRTVKKIKV 144
V V N++ +TVKKIKV
Sbjct: 234 VAVTNSTEKTVKKIKV 249
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 225 LYYHGESIAVNVHVANNSNRTVKKIK-----VSDICLFSTAQYKCTVAETESDCPIAPVS 279
+YYHGE I V V V N++ +TVKKIK V+++ L+S+ Y TVA E+ + P S
Sbjct: 223 IYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNS 282
>pdb|1CF1|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 404
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/136 (55%), Positives = 89/136 (65%), Gaps = 3/136 (2%)
Query: 12 QERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETA---EDK 68
QE L+KKLG N +PF P P SV LQPAP D GK CGVD+E+KAF + EDK
Sbjct: 104 QESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDK 163
Query: 69 IHKRNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAVN 128
I K++SVRL IRK+ +AP G QP E S +F MS L L SL KE+YYHGE I V
Sbjct: 164 IPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVT 223
Query: 129 VHVANNSNRTVKKIKV 144
V V N++ +TVKKIKV
Sbjct: 224 VAVTNSTEKTVKKIKV 239
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 225 LYYHGESIAVNVHVANNSNRTVKKIK-----VSDICLFSTAQYKCTVAETESDCPIAPVS 279
+YYHGE I V V V N++ +TVKKIK V+++ L+S+ Y TVA E+ + P S
Sbjct: 213 IYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNS 272
Query: 280 MFDTEDLAML 289
T+ L ++
Sbjct: 273 SL-TKTLTLV 281
>pdb|1AYR|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 368
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/136 (55%), Positives = 89/136 (65%), Gaps = 3/136 (2%)
Query: 12 QERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETA---EDK 68
QE L+KKLG N +PF P P SV LQPAP D GK CGVD+E+KAF + EDK
Sbjct: 104 QESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDK 163
Query: 69 IHKRNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAVN 128
I K++SVRL IRK+ +AP G QP E S +F MS L L SL KE+YYHGE I V
Sbjct: 164 IPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVT 223
Query: 129 VHVANNSNRTVKKIKV 144
V V N++ +TVKKIKV
Sbjct: 224 VAVTNSTEKTVKKIKV 239
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 225 LYYHGESIAVNVHVANNSNRTVKKIK-----VSDICLFSTAQYKCTVAETESDCPIAPVS 279
+YYHGE I V V V N++ +TVKKIK V+++ L+S+ Y TVA E+ + P S
Sbjct: 213 IYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNS 272
Query: 280 MFDTEDLAML 289
T+ L ++
Sbjct: 273 SL-TKTLTLV 281
>pdb|3UGU|A Chain A, Crystal Structure Of P44 (Splice Variant Of Visual
Arrestin)
Length = 380
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/136 (55%), Positives = 89/136 (65%), Gaps = 3/136 (2%)
Query: 12 QERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETA---EDK 68
QE L+KKLG N +PF P P SV LQPAP D GK CGVD+E+KAF + EDK
Sbjct: 114 QESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDK 173
Query: 69 IHKRNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAVN 128
I K++SVRL IRK+ +AP G QP E S +F MS L L SL KE+YYHGE I V
Sbjct: 174 IPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVT 233
Query: 129 VHVANNSNRTVKKIKV 144
V V N++ +TVKKIKV
Sbjct: 234 VAVTNSTEKTVKKIKV 249
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 225 LYYHGESIAVNVHVANNSNRTVKKIK-----VSDICLFSTAQYKCTVAETESDCPIAPVS 279
+YYHGE I V V V N++ +TVKKIK V+++ L+S+ Y TVA E+ + P S
Sbjct: 223 IYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNS 282
Query: 280 MFDTEDLAML 289
T+ L ++
Sbjct: 283 SL-TKTLTLV 291
>pdb|3ROT|A Chain A, Crystal Structure Of Abc Sugar Transporter (Periplasmic
Sugar Binding Protein) From Legionella Pneumophila
pdb|3ROT|B Chain B, Crystal Structure Of Abc Sugar Transporter (Periplasmic
Sugar Binding Protein) From Legionella Pneumophila
Length = 297
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 6 YKVTFGQERLM--KKLGPNAFPFFFELPPSCPASVTLQPAPGDTG 48
Y V G + L+ KKLG A EL PS ++ L P PG G
Sbjct: 104 YLVFLGSDNLLAGKKLGEKAL----ELTPSAKRALVLNPQPGHIG 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,620,361
Number of Sequences: 62578
Number of extensions: 403428
Number of successful extensions: 924
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 24
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)